genome.fa.s2.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  128  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38654630--38654664	13	2.8	12	83	8	52	31	11	0	57	1.34
38654761--38654867	21	5.2	21	69	17	73	38	0	3	57	1.23
38654780--38654932	55	2.6	60	83	9	185	42	0	3	53	1.22
38664512--38664634	49	2.5	49	80	6	133	28	20	26	24	1.99
38666857--38666913	27	2.1	27	93	0	96	24	15	29	29	1.96
38673622--38673780	50	3.0	54	81	8	161	25	22	31	20	1.98
38695438--38695508	26	2.7	27	80	6	76	45	0	1	53	1.09
38695431--38695546	27	4.3	26	74	10	92	43	1	1	52	1.21
38702426--38702531	17	6.2	17	72	8	90	31	11	5	51	1.61
38706535--38706563	15	1.9	15	100	0	58	37	0	20	41	1.53
38711448--38711489	16	2.7	16	79	17	52	47	19	9	23	1.78
38711535--38712014	27	18.1	26	79	8	452	18	16	23	42	1.89
38711535--38712014	54	9.0	54	80	4	501	18	16	23	42	1.89
38711698--38711737	21	1.9	21	84	0	53	20	20	25	35	1.96
38711671--38711766	47	2.0	48	85	2	131	17	18	25	38	1.93
38711535--38712011	209	2.3	209	84	4	600	18	16	22	42	1.89
38714927--38715437	27	19.0	27	84	3	575	19	18	20	41	1.90
38714927--38715439	80	6.4	80	83	6	615	19	18	20	41	1.90
38721001--38721038	7	5.4	7	87	0	58	34	23	13	28	1.92
38730595--38730792	95	2.1	95	93	0	333	23	39	21	15	1.92
38734929--38734982	26	2.1	26	100	0	108	42	18	16	22	1.89
38741478--38741555	40	2.0	40	97	0	147	32	3	20	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38755585--38755634	18	2.5	20	81	9	59	4	20	6	70	1.25
38757299--38757352	28	2.0	27	82	13	67	59	11	14	14	1.62
38757497--38757549	25	2.1	26	82	10	65	49	15	18	16	1.80
38758743--38758805	26	2.4	27	89	5	94	50	15	6	26	1.68
38758743--38758816	26	2.8	26	86	8	80	52	13	8	25	1.67
38760062--38760169	53	2.0	53	100	0	216	20	39	1	37	1.63
38764903--38764949	24	1.9	24	83	12	60	38	0	36	25	1.56
38765624--38766278	27	24.5	27	79	5	629	42	20	16	20	1.90
38765624--38766269	107	6.0	106	85	5	750	42	19	17	20	1.89
38766513--38766581	26	2.7	26	75	4	77	18	21	26	33	1.97
38766683--38766883	28	7.2	28	83	4	230	24	21	23	30	1.99
38766687--38766883	84	2.3	84	86	3	279	24	20	23	30	1.98
38766683--38766883	56	3.6	56	86	4	271	24	21	23	30	1.99
38772532--38772610	19	3.8	20	82	14	90	37	17	8	35	1.81
38772983--38773488	44	11.5	44	78	10	412	29	24	15	30	1.96
38772953--38773411	89	5.2	86	81	7	458	28	25	14	31	1.95
38772983--38773422	133	3.3	131	87	3	605	30	25	14	30	1.95
38773021--38773488	89	5.3	89	79	9	433	29	24	16	30	1.96
38773448--38773765	44	7.2	44	64	10	139	23	28	22	25	1.99
38773421--38774451	88	11.6	88	89	2	1494	24	27	23	24	2.00
38774050--38774583	44	12.2	44	68	7	278	23	26	24	25	2.00
38773508--38774583	132	8.1	132	66	9	446	24	27	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38774440--38774630	88	2.2	88	82	1	231	26	23	23	26	2.00
38774356--38774627	132	2.1	132	84	5	345	25	25	23	25	2.00
38774220--38774630	220	1.9	219	85	2	572	24	25	24	25	2.00
38776752--38776777	8	3.2	8	100	0	52	65	0	23	11	1.25
38776764--38776824	25	2.8	21	85	12	70	63	8	13	14	1.50
38781758--38781811	21	2.7	21	85	5	67	35	18	12	33	1.89
38786226--38786384	33	4.7	33	70	24	125	31	27	20	20	1.97
38786235--38786426	102	1.9	102	95	0	348	31	28	18	21	1.97
38795056--38795124	35	2.0	34	83	8	86	24	24	26	24	2.00
38796436--38796500	30	2.2	30	91	0	103	20	29	30	20	1.97
38798947--38798981	18	1.9	18	88	0	52	8	20	2	68	1.29
38811664--38811737	37	2.0	37	91	0	121	40	18	14	25	1.89
38815682--38815731	18	2.8	18	84	0	55	6	18	2	74	1.12
38817329--38817391	33	1.9	33	86	0	90	30	25	22	22	1.99
38817709--38818002	27	10.9	26	84	6	354	19	18	21	40	1.91
38818280--38818332	27	2.0	27	96	0	97	39	7	22	30	1.82
38836307--38836667	117	3.1	116	84	4	433	30	23	20	25	1.98
38836307--38836684	114	3.3	115	83	5	447	30	23	20	25	1.99
38843466--38843505	21	1.9	21	94	0	71	22	12	5	60	1.52
38847997--38848042	21	2.1	22	84	4	58	67	2	23	6	1.25
38848076--38848142	33	1.9	33	85	8	89	49	8	29	11	1.70
38857103--38857357	41	6.3	40	80	4	253	34	16	27	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38857103--38857357	82	3.1	82	80	2	291	34	16	27	21	1.94
38857151--38857217	20	3.3	20	66	4	53	34	17	31	16	1.93
38857120--38857348	122	1.9	123	84	2	309	35	16	27	20	1.93
38858851--38858890	21	1.9	21	85	10	55	37	12	5	45	1.64
38862742--38863021	78	3.6	78	94	1	463	38	3	13	44	1.62
38863697--38863931	82	2.9	82	86	1	238	31	19	25	24	1.98
38863729--38863931	41	4.9	41	87	1	273	31	19	25	24	1.98
38863745--38863931	82	2.3	82	91	0	302	29	20	26	23	1.99
38864107--38864220	34	3.2	36	75	8	108	34	7	16	42	1.75
38864107--38864220	36	3.2	34	75	10	95	34	7	16	42	1.75
38866145--38866198	25	2.2	25	89	0	81	18	48	11	22	1.79
38869663--38869893	67	3.5	66	75	15	262	42	5	3	48	1.43
38869647--38869981	130	2.6	127	88	5	480	43	4	3	47	1.42
38869647--38869935	67	4.5	60	71	19	210	43	4	3	48	1.40
38875866--38875983	57	2.1	57	100	0	236	22	8	16	51	1.71
38876054--38876097	21	2.0	22	86	4	63	11	9	25	54	1.65
38877743--38877798	22	2.5	22	91	0	85	25	32	19	23	1.98
38882851--38883011	80	2.0	79	97	1	304	31	16	16	36	1.91
38888604--38888647	21	2.0	22	86	4	63	11	9	25	54	1.65
38891447--38891496	25	2.0	26	84	4	66	12	10	8	70	1.35
38900876--38900923	18	2.5	19	83	10	53	62	4	4	29	1.32
38902539--38906911	132	33.1	132	88	0	6286	26	24	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38903249--38903433	44	4.2	44	62	8	115	26	21	21	30	1.98
38904966--38905146	44	4.1	45	63	13	97	27	23	19	28	1.99
38906806--38907014	102	2.0	102	88	1	312	27	22	21	29	1.99
38906911--38907250	132	2.6	132	89	2	479	27	23	18	30	1.98
38907609--38908972	132	10.4	132	87	2	1928	25	24	19	29	1.99
38908756--38908941	44	4.2	45	64	11	114	25	23	20	30	1.98
38909076--38911182	132	15.9	132	75	2	1544	24	22	18	27	1.94
38909076--38911182	398	5.3	396	71	2	1483	24	22	18	27	1.94
38909888--38909917	14	2.1	14	100	0	60	10	26	23	40	1.86
38910342--38911182	395	2.1	395	90	1	1344	27	23	19	29	1.98
38912005--38912852	132	6.4	132	85	2	1069	27	23	20	28	1.99
38914158--38916352	132	16.6	132	90	0	3332	25	23	20	30	1.98
38916700--38917534	132	6.3	132	89	0	1253	26	22	19	31	1.98
38917831--38919478	132	12.5	132	89	1	2446	25	24	20	29	1.99
38919098--38919414	44	7.2	43	62	13	108	26	22	19	30	1.98
38923056--38924008	132	7.2	132	89	1	1444	25	24	20	30	1.98
38928232--38929083	132	6.4	132	90	1	1310	25	23	19	30	1.98
38929046--38929117	34	2.1	34	89	0	108	25	22	16	36	1.94
38928909--38929293	210	1.8	210	92	1	655	25	23	18	31	1.98
38929080--38929169	44	2.0	44	100	0	180	24	25	15	34	1.95
38928644--38929499	474	1.8	475	93	0	1500	25	24	19	30	1.98
38929119--38929500	132	2.9	132	90	1	640	25	25	19	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38928777--38929417	342	1.9	342	92	0	1077	25	23	19	31	1.98
38932409--38933793	132	10.5	132	90	0	2108	25	23	19	30	1.98
38943794--38945244	132	11.0	132	92	1	2348	25	24	19	30	1.98
38943818--38944930	44	25.2	44	61	9	181	25	24	19	30	1.98
38946597--38951866	132	39.8	132	87	2	7181	24	24	19	29	1.97
38947650--38949022	44	31.2	44	61	11	184	25	24	19	29	1.99
38950566--38951014	44	10.2	44	61	11	130	24	24	21	29	1.99
38951493--38951673	44	4.1	44	63	12	111	26	22	20	30	1.98
38951967--38953263	132	9.9	132	89	2	1928	25	24	19	30	1.98
38970090--38970655	132	4.3	132	88	1	841	27	23	18	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206