Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  206  of  206  ( 24623 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62674609--62674652
10
4.4
10
81
18
56
47
11
0
40
1.39
62674602--62674644
19
2.2
20
91
4
70
48
6
0
44
1.29
62677350--62677390
21
2.0
21
95
0
73
36
17
4
41
1.71
62687193--62687279
27
3.4
27
62
18
67
16
14
9
59
1.59
62687183--62687281
50
2.0
50
100
0
198
19
14
10
56
1.66
62693567--62693730
87
1.9
87
91
2
267
37
21
19
20
1.94
62707725--62707803
40
2.0
40
89
0
122
36
3
8
50
1.52
62711458--62711496
16
2.4
16
87
12
53
66
5
0
28
1.12
62712514--62712553
11
3.6
11
82
0
53
55
0
17
27
1.43
62718233--62718280
24
2.0
24
83
0
60
14
10
2
72
1.19
62725543--62725608
31
2.1
31
86
5
89
45
7
10
36
1.67
62726183--62726220
19
2.0
19
100
0
76
26
26
21
26
1.99
62726466--62726541
34
2.2
34
92
0
125
26
6
31
35
1.82
62731585--62731648
32
2.0
33
84
3
85
25
20
1
53
1.55
62731606--62731655
18
2.6
19
87
6
66
22
22
2
54
1.55
62738417--62738443
6
4.5
6
100
0
54
33
33
14
18
1.92
62740163--62740206
16
2.8
16
86
6
54
29
0
13
56
1.38
62741911--62741956
22
2.1
22
84
8
58
8
8
2
80
0.99
62742768--62742856
31
2.8
32
74
5
92
22
23
24
29
1.99
62755055--62755095
21
2.0
21
85
9
57
12
14
26
46
1.80
62756602--62756631
12
2.5
12
88
0
51
0
6
16
76
0.99
62764217--62764255
20
2.0
20
85
14
55
61
0
2
35
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62769180--62769416
7
33.3
7
91
2
215
8
9
47
35
1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206

The End!