genome.fa.s2.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  107  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31688478--31688504	9	3.0	9	100	0	54	22	11	22	44	1.84
31692903--31693059	21	7.5	21	76	3	138	43	19	23	14	1.87
31692907--31693125	42	5.2	42	82	4	212	44	17	21	15	1.86
31693004--31693144	42	3.4	41	80	9	101	45	15	22	16	1.85
31695220--31695276	24	2.4	25	82	8	73	49	5	1	43	1.35
31700251--31700342	41	2.2	41	84	0	112	25	18	30	26	1.98
31700757--31700790	14	2.4	14	90	0	50	26	2	41	29	1.70
31700893--31700929	18	2.1	18	100	0	74	51	0	5	43	1.24
31700996--31701044	14	3.4	14	88	2	71	22	0	38	38	1.54
31701282--31701315	14	2.3	15	95	5	61	26	0	35	38	1.57
31701346--31701378	14	2.4	14	90	10	50	24	3	45	27	1.68
31705594--31705684	43	2.1	43	85	2	121	32	10	10	45	1.75
31706085--31706337	43	5.9	43	85	4	305	27	18	27	26	1.98
31706089--31706337	87	2.9	86	83	4	297	27	18	27	26	1.98
31706086--31706358	130	2.1	128	82	2	323	27	17	26	27	1.98
31718947--31718976	16	1.9	15	93	6	51	16	50	6	26	1.70
31723335--31723402	21	3.3	20	80	12	84	69	7	1	22	1.22
31723353--31723390	20	2.0	20	89	5	60	68	5	2	23	1.23
31723353--31723391	19	2.2	18	86	9	53	69	5	2	23	1.21
31723991--31724169	9	18.8	9	67	18	87	58	1	3	35	1.26
31724128--31724177	18	2.6	19	81	9	57	64	0	4	32	1.12
31737814--31738084	81	3.3	81	79	5	271	16	19	19	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31739845--31739950	18	5.9	18	78	0	86	17	17	34	29	1.94
31742546--31742678	64	2.1	64	97	0	248	26	16	30	27	1.97
31743436--31743482	24	2.0	24	83	8	60	42	2	10	44	1.51
31744815--31744851	18	2.1	18	94	0	65	62	8	10	18	1.52
31745076--31745129	23	2.4	22	84	3	72	70	3	3	22	1.19
31747664--31747708	16	2.8	16	86	3	54	51	11	2	35	1.50
31747667--31747731	27	2.3	27	86	5	85	53	10	4	30	1.56
31747705--31747741	18	2.1	18	94	0	65	62	8	10	18	1.52
31753731--31753779	25	2.0	25	83	0	62	46	22	2	28	1.63
31754921--31754963	22	2.0	22	85	0	59	11	16	4	67	1.38
31754998--31755059	24	2.5	24	78	7	61	46	8	3	41	1.49
31755621--31755668	21	2.5	18	77	12	51	62	6	0	31	1.20
31756392--31756422	7	4.4	7	100	0	62	38	0	0	61	0.96
31757964--31758006	13	3.5	13	75	18	56	48	13	0	37	1.43
31757964--31758015	23	2.3	23	96	0	95	50	13	0	36	1.42
31762442--31762476	17	2.1	17	88	0	52	68	2	8	20	1.29
31763304--31763346	13	3.5	13	75	18	56	48	13	0	37	1.43
31763304--31763355	23	2.3	23	96	0	95	50	13	0	36	1.42
31765077--31765131	25	2.2	25	78	12	60	61	7	9	21	1.50
31765342--31765373	15	2.1	15	94	0	55	25	0	34	40	1.56
31765351--31765388	14	2.7	15	84	12	53	28	0	28	42	1.56
31765335--31765409	21	3.5	20	71	12	53	25	0	33	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31765404--31765455	22	2.4	21	81	9	59	25	0	40	34	1.56
31765680--31765718	14	2.7	15	88	11	64	25	0	30	43	1.55
31765709--31765753	21	2.1	21	87	0	63	24	0	37	37	1.56
31765716--31765754	14	2.8	14	84	0	51	25	0	41	33	1.56
31765863--31765912	25	2.0	24	81	11	57	48	8	2	42	1.44
31766334--31766488	73	2.1	73	81	7	172	26	15	21	36	1.93
31768375--31768416	22	1.9	21	85	9	57	50	11	2	35	1.52
31770495--31770719	43	5.3	42	78	4	227	28	18	27	25	1.98
31770498--31770719	85	2.6	84	82	5	250	28	18	27	25	1.98
31771698--31772072	144	2.6	144	96	0	705	30	10	21	38	1.86
31773510--31773621	27	4.1	27	90	0	170	35	14	26	23	1.93
31773510--31773638	54	2.4	54	85	2	170	37	15	24	23	1.93
31773520--31773638	27	4.4	26	86	2	121	37	15	23	22	1.93
31782172--31782209	16	2.3	17	86	9	60	55	0	0	44	0.99
31785090--31785146	25	2.3	25	100	0	114	31	21	19	28	1.97
31785090--31785179	25	3.6	25	85	8	103	32	23	17	26	1.97
31785858--31785917	28	2.2	28	81	3	77	30	26	21	21	1.99
31786270--31786519	27	9.3	27	88	4	353	23	17	18	41	1.90
31790360--31790395	18	2.0	18	100	0	72	38	0	0	61	0.96
31791681--31791738	25	2.3	25	84	0	71	20	29	22	27	1.99
31797905--31797961	25	2.3	25	87	0	87	33	21	19	26	1.97
31803632--31803688	25	2.2	25	87	3	87	19	19	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31813418--31813602	101	1.8	101	89	5	293	23	16	27	31	1.96
31813417--31813609	51	3.8	49	78	10	176	23	17	27	31	1.97
31819674--31819805	50	2.7	49	83	4	158	27	21	30	20	1.98
31825290--31825333	15	3.1	14	78	9	54	22	2	0	75	0.92
31825297--31825357	22	2.7	22	80	10	61	27	1	1	68	1.08
31837761--31838182	89	4.8	89	73	8	261	28	20	24	26	1.99
31837761--31838148	44	8.8	44	77	7	297	27	19	25	27	1.99
31837766--31838099	131	2.5	133	82	7	385	28	19	24	27	1.98
31837864--31838182	175	1.8	177	86	1	462	27	20	25	26	1.99
31842049--31842099	27	1.9	26	88	4	75	23	3	5	66	1.30
31842217--31842265	20	2.5	20	76	6	55	53	2	0	44	1.12
31844929--31844986	21	2.8	21	81	5	73	50	20	8	20	1.75
31848862--31848917	16	3.5	15	76	9	58	7	50	16	26	1.70
31851865--31852022	30	5.3	29	73	14	135	32	13	3	50	1.60
31851863--31852022	60	2.7	58	82	9	180	31	13	3	50	1.59
31858179--31858336	30	5.2	30	82	6	149	48	1	15	34	1.56
31858195--31858333	60	2.3	60	86	4	183	49	2	15	33	1.56
31866635--31866696	28	2.2	28	85	0	88	11	17	51	19	1.75
31866743--31866787	18	2.5	19	78	10	58	8	6	42	42	1.62
31867215--31867334	41	2.9	41	96	0	222	30	16	20	31	1.95
31867503--31867611	44	2.5	45	78	4	123	32	18	18	31	1.95
31867302--31867610	138	2.2	138	83	1	413	28	18	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31867302--31867662	138	2.6	138	79	3	343	28	19	19	32	1.97
31883500--31883560	28	2.2	28	84	0	86	18	19	45	16	1.85
31883582--31883617	17	2.2	17	90	5	56	0	13	41	44	1.44
31892395--31892432	15	2.6	14	91	8	58	13	31	5	50	1.63
31894992--31896024	128	8.1	128	91	0	1591	24	23	20	31	1.98
31897490--31897527	12	2.8	13	84	15	51	13	15	0	71	1.16
31897488--31897536	19	2.7	18	81	9	64	12	12	0	75	1.05
31898426--31898495	26	2.7	25	76	12	70	10	10	10	70	1.36
31911170--31911239	16	4.4	16	94	0	95	31	0	34	34	1.58
31911218--31911327	45	2.6	43	80	9	129	33	5	29	31	1.80
31911449--31911503	25	2.2	25	84	9	69	52	1	0	45	1.11
31911678--31911738	28	2.2	28	85	5	81	50	3	0	45	1.17
31911644--31911860	91	2.4	89	85	6	299	47	4	3	45	1.38
31911678--31911820	44	3.2	42	70	20	119	48	2	2	46	1.28
31911685--31911841	47	3.4	47	68	15	128	49	3	1	44	1.31
31919608--31919809	30	6.8	30	83	6	214	40	2	19	37	1.65
31919648--31919828	90	2.0	90	82	6	224	42	1	19	37	1.59
31920563--31920632	16	4.4	16	96	0	104	31	0	35	32	1.58
31921091--31921229	47	3.0	47	68	16	128	49	3	2	44	1.31
31924350--31924435	36	2.4	37	90	2	129	53	12	27	5	1.61
31930295--31930382	43	2.0	43	82	4	106	38	7	5	47	1.56
31931588--31931618	16	1.9	16	93	0	53	25	29	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31932876--31932902	14	1.9	14	100	0	54	22	0	3	74	0.98
31934036--31934072	16	2.3	16	100	0	74	37	5	35	21	1.77
31934052--31934142	46	2.0	46	93	4	159	26	4	30	38	1.76
31934052--31934159	46	2.5	44	85	11	145	28	3	31	36	1.75
31934301--31934339	17	2.5	15	84	15	60	61	0	0	38	0.96
31934306--31934339	17	2.0	17	100	0	68	58	0	0	41	0.98
31934372--31934411	20	2.0	21	85	5	55	60	5	0	35	1.19
31934395--31934458	26	2.4	28	89	5	96	57	0	0	42	0.98
31934286--31934542	117	2.3	109	84	11	306	51	4	1	43	1.29
31935893--31935996	49	2.1	49	87	0	145	50	9	8	30	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206