genome.fa.s2.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr02 ID=Chr02-JGI_221_v2.0
Parameters: 2 7 7 80 10 50 1000
Length:  62769430

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   

This is table  124  of  206  ( 24623 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37157034--37157086	23	2.3	23	78	12	56	45	13	3	37	1.61
37180744--37180773	15	2.0	15	93	0	51	33	10	6	50	1.62
37180787--37180821	15	2.3	15	90	0	52	25	20	11	42	1.85
37182194--37182283	42	2.1	42	86	8	121	40	17	10	32	1.83
37184682--37184775	46	2.0	46	95	0	170	22	20	23	34	1.97
37185109--37185252	62	2.2	64	90	8	222	48	7	13	29	1.71
37186170--37186223	19	2.8	19	80	2	63	72	1	16	9	1.19
37188401--37188492	46	2.0	46	95	0	166	23	21	21	32	1.98
37190740--37190800	11	5.7	10	81	16	70	70	9	3	16	1.27
37190751--37190802	9	4.6	12	79	18	58	73	9	1	15	1.18
37190741--37190787	24	2.0	24	91	8	78	68	10	4	17	1.35
37190739--37190802	33	1.9	33	90	9	103	70	9	4	15	1.30
37190741--37190800	24	2.8	19	83	16	66	70	10	3	16	1.29
37190764--37190801	20	1.9	20	94	0	67	71	10	2	15	1.25
37191743--37191771	15	1.9	15	100	0	58	75	0	24	0	0.80
37191742--37191802	18	3.6	18	80	8	65	63	1	24	9	1.34
37191850--37191922	34	2.2	32	81	11	85	61	1	27	9	1.35
37197143--37197438	39	7.4	39	82	8	324	32	18	13	35	1.90
37197190--37197434	87	2.9	86	84	7	283	31	19	14	34	1.92
37197165--37197400	126	1.9	125	90	0	373	32	19	14	33	1.91
37199457--37199497	14	2.9	15	79	17	52	48	9	0	41	1.36
37205757--37205841	45	1.9	44	85	7	118	37	15	18	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37209559--37209598	20	2.0	20	100	0	80	35	30	20	15	1.93
37211681--37211719	18	2.2	18	90	0	60	41	15	10	33	1.81
37211690--37211771	36	2.3	36	82	0	92	46	19	4	29	1.71
37223957--37224000	23	1.9	22	82	17	54	36	25	0	38	1.56
37224143--37224329	51	3.7	50	75	5	189	30	28	16	24	1.96
37224130--37224324	102	1.9	101	88	5	295	29	27	17	25	1.97
37224139--37224328	101	1.9	101	85	6	251	31	29	16	23	1.96
37226855--37227088	99	2.3	104	80	7	255	24	28	20	26	1.99
37226798--37227095	49	5.9	50	79	6	255	24	27	19	27	1.99
37237027--37237118	22	4.0	22	70	19	64	39	25	14	21	1.91
37242244--37242289	22	2.1	21	84	11	58	43	0	0	56	0.99
37248528--37248610	42	2.0	42	92	0	139	32	18	9	39	1.83
37254362--37254403	9	4.6	9	87	3	57	0	2	16	80	0.81
37254365--37254401	19	1.9	19	89	10	58	0	2	16	81	0.81
37256025--37256067	22	2.0	22	100	0	86	37	13	25	23	1.92
37257177--37257238	20	3.1	20	75	9	72	14	32	19	33	1.92
37257184--37257247	20	3.2	19	70	16	58	14	32	15	37	1.87
37261424--37261469	19	2.3	20	72	24	51	58	0	8	32	1.28
37265246--37265283	18	2.2	18	90	4	60	60	5	26	7	1.46
37267022--37267069	20	2.4	20	82	0	60	20	18	18	41	1.90
37284880--37284956	26	3.0	25	81	12	102	35	19	9	36	1.84
37288200--37288328	45	2.9	45	80	6	131	33	22	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37293446--37293646	45	4.5	45	82	2	208	35	24	12	27	1.91
37293446--37293646	89	2.2	90	80	4	219	35	24	12	27	1.91
37309114--37309175	32	1.9	34	83	9	85	25	1	9	62	1.35
37309972--37310050	31	2.5	31	83	4	88	20	25	30	24	1.98
37315988--37316031	5	8.8	5	84	0	52	22	52	0	25	1.48
37322839--37322919	22	3.7	22	86	0	117	28	14	27	29	1.95
37324989--37325180	51	3.8	49	79	6	179	31	27	14	26	1.95
37331720--37331797	27	2.9	27	78	0	93	24	14	20	41	1.89
37341408--37341511	22	4.7	22	87	0	145	29	14	20	35	1.92
37342865--37343126	135	1.9	134	95	0	470	31	19	13	34	1.91
37374163--37374236	25	3.0	25	76	13	71	22	20	22	33	1.97
37378370--37378457	37	2.4	37	88	1	124	14	12	32	39	1.84
37382785--37382945	45	3.5	44	78	11	139	22	18	24	34	1.96
37396729--37396779	21	2.4	21	86	0	75	33	5	15	45	1.71
37401374--37401464	24	3.8	23	77	10	76	34	5	6	53	1.50
37407106--37407152	7	6.9	7	90	4	78	70	0	14	14	1.18
37407107--37407150	13	3.3	13	90	3	70	70	0	15	13	1.17
37407106--37407157	20	2.5	20	90	6	77	69	0	17	13	1.19
37408502--37408850	44	7.5	44	67	16	157	32	18	21	27	1.97
37408501--37408915	142	2.9	142	95	0	749	32	17	21	27	1.96
37408771--37408859	44	2.0	44	86	0	124	30	19	23	26	1.98
37408992--37409155	50	3.3	50	72	8	163	35	21	17	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37408962--37409171	100	2.1	100	90	0	330	32	21	18	27	1.97
37410823--37410913	24	3.8	23	77	10	76	34	5	6	53	1.50
37414382--37414425	22	2.0	22	82	4	54	45	22	18	13	1.84
37429466--37429800	26	12.7	26	81	8	369	30	15	24	29	1.95
37429466--37429800	53	6.3	52	83	6	372	30	15	24	29	1.95
37429466--37429809	79	4.3	79	88	5	471	30	15	24	30	1.95
37429963--37430059	27	3.6	27	72	10	81	39	12	26	21	1.89
37434945--37435091	50	2.9	52	84	5	201	27	17	27	28	1.97
37435003--37435084	26	3.2	26	63	22	64	25	14	26	32	1.95
37435091--37435177	45	1.9	45	90	0	138	26	16	24	33	1.95
37437771--37437857	3	29.3	3	72	6	70	63	3	5	27	1.34
37439217--37439337	35	3.5	35	87	2	172	42	28	9	18	1.82
37442348--37442532	51	3.7	50	79	6	203	29	27	16	25	1.97
37442346--37442530	101	1.8	101	89	3	291	30	27	16	25	1.97
37447384--37447442	26	2.2	28	85	11	79	55	6	0	37	1.26
37448253--37448294	13	3.2	13	80	12	59	45	11	14	28	1.80
37448243--37448294	26	2.0	27	92	3	88	46	11	13	28	1.78
37448254--37448310	26	2.2	26	84	6	71	43	17	12	26	1.84
37448514--37448562	19	2.5	20	83	12	66	42	4	0	53	1.20
37448612--37448687	38	2.1	36	82	5	89	50	1	0	48	1.09
37450889--37450916	7	4.0	7	100	0	56	85	0	14	0	0.59
37452306--37452341	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37454188--37454212	8	3.1	8	100	0	50	24	0	0	76	0.80
37466528--37466585	30	1.9	30	85	0	80	36	3	25	34	1.73
37466798--37466828	13	2.4	13	94	0	53	25	3	9	61	1.42
37466924--37467116	50	3.8	50	84	0	224	26	22	30	20	1.98
37473354--37473517	82	2.0	82	97	0	310	32	3	36	26	1.74
37478923--37478991	22	3.1	22	97	0	129	34	14	24	26	1.94
37495357--37495403	20	2.3	20	85	0	58	25	19	29	25	1.98
37509113--37509146	16	2.2	16	89	5	52	8	41	0	50	1.34
37510420--37510464	22	2.0	22	87	8	65	28	0	20	51	1.48
37517302--37517328	14	1.9	14	100	0	54	66	0	18	14	1.25
37526160--37526193	16	2.2	16	94	5	61	52	14	5	26	1.64
37526535--37526604	35	2.0	35	97	0	131	28	4	22	44	1.72
37533492--37533523	16	2.0	16	100	0	64	25	31	6	37	1.81
37541147--37541183	14	2.6	14	91	0	65	43	21	5	29	1.75
37546811--37546871	26	2.3	26	81	8	79	21	13	4	60	1.51
37548013--37548057	22	2.0	22	100	0	90	33	13	22	31	1.92
37549111--37549178	20	3.4	21	73	15	63	32	19	29	19	1.96
37549394--37549419	2	13.0	2	100	0	52	50	0	0	50	1.00
37571912--37571970	23	2.5	24	75	10	68	44	15	18	22	1.87
37574992--37575122	65	2.0	65	100	0	262	32	4	12	50	1.60
37589165--37589241	21	3.5	21	64	10	55	41	15	19	23	1.89
37589120--37589241	45	2.7	45	83	0	154	40	15	19	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37589293--37589357	34	1.9	34	83	0	85	44	18	16	20	1.87
37599627--37599689	21	3.0	21	88	2	90	30	3	33	33	1.74
37600822--37600880	30	2.0	30	83	6	75	28	15	25	30	1.96
37605115--37605302	51	3.7	51	83	2	218	31	26	15	26	1.96
37612794--37612982	51	3.7	51	84	2	220	30	28	16	24	1.96
37622382--37622426	18	2.5	18	89	7	65	60	6	2	31	1.35
37625058--37625556	108	4.7	108	85	7	684	33	19	17	29	1.94
37625058--37625556	205	2.3	210	89	7	747	33	19	17	29	1.94
37626290--37626338	24	2.1	23	85	7	64	63	0	4	32	1.13
37627839--37628393	44	12.8	43	69	11	301	29	22	17	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206