genome.fa.s68.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  1  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9348--9396	24	2.0	24	92	0	80	18	14	18	48	1.80
10287--10326	8	5.2	8	85	11	57	15	10	22	52	1.71
10298--10326	14	2.1	14	100	0	58	13	13	20	51	1.75
16625--16666	21	2.0	22	85	4	59	40	0	2	57	1.12
20349--20392	3	14.7	3	100	0	88	31	0	0	68	0.90
22881--22920	17	2.3	18	83	12	57	20	0	12	67	1.22
22881--22927	15	3.1	15	88	11	62	21	0	10	68	1.20
27931--27965	2	17.5	2	100	0	70	48	0	0	51	1.00
36014--36095	41	2.0	41	100	0	164	34	17	17	31	1.93
36660--36717	28	2.1	28	100	0	116	48	6	3	41	1.47
39379--39412	15	2.2	16	89	5	52	70	0	2	26	1.01
57430--57482	25	2.1	25	86	6	72	71	1	13	13	1.22
59423--59478	25	2.2	25	78	15	62	73	1	14	10	1.18
59735--59760	6	4.3	6	100	0	52	84	0	0	15	0.62
60132--60164	15	2.1	16	88	5	50	57	0	0	42	0.98
60153--60192	17	2.2	20	86	13	59	55	0	0	45	0.99
60310--60340	2	15.5	2	100	0	62	51	0	0	48	1.00
67849--67889	21	1.9	22	85	5	57	63	0	0	36	0.95
68335--68365	15	2.0	16	93	6	55	35	0	0	64	0.94
68332--68377	17	2.7	18	83	12	62	36	0	0	63	0.95
68396--68436	20	2.0	21	90	4	66	51	2	0	46	1.14
68394--68451	12	5.1	12	78	18	61	51	1	0	46	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68414--68453	13	3.2	13	85	7	64	60	0	0	40	0.97
70448--70538	34	2.7	33	72	5	83	45	10	9	34	1.73
70594--70670	33	2.3	33	82	8	86	42	2	10	44	1.52
74489--74522	3	11.3	3	100	0	68	67	0	0	32	0.91
74513--74556	19	2.3	19	84	7	63	50	2	2	45	1.27
77596--77909	100	3.2	99	76	9	275	39	16	10	33	1.83
77539--77909	49	7.5	49	78	6	284	39	17	10	32	1.83
80916--80966	17	3.1	17	78	13	61	78	3	0	17	0.90
87333--87442	30	3.6	30	79	13	118	69	0	22	8	1.15
87371--87427	20	2.7	21	78	8	71	75	0	21	3	0.95
87349--87442	29	3.2	29	73	11	84	72	0	21	6	1.07
89208--89397	41	4.6	40	80	7	202	27	13	21	37	1.91
89207--89397	83	2.3	81	82	5	231	28	13	20	37	1.91
89447--89623	42	4.2	43	85	5	218	22	12	18	46	1.82
89427--89623	84	2.3	81	79	9	223	24	12	18	44	1.84
89755--89784	8	3.6	8	91	8	51	86	0	0	13	0.57
90519--90564	17	2.7	18	77	16	53	78	4	0	17	0.91
94725--94758	2	17.5	2	93	6	61	50	0	0	50	1.00
95959--96001	22	2.0	21	86	4	59	65	2	16	16	1.38
96132--96189	30	2.0	30	96	3	109	50	5	10	34	1.59
99652--99730	29	2.6	29	76	8	77	50	3	2	43	1.33
100824--100867	2	22.5	2	81	4	54	52	4	2	40	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106599--106632	2	17.0	2	100	0	68	50	0	0	50	1.00
112343--112386	7	6.3	7	86	7	54	15	6	0	77	0.97
112346--112379	13	2.5	13	95	4	59	17	2	0	79	0.86
113498--113698	60	3.3	58	81	8	199	41	12	3	41	1.62
121108--121136	2	14.5	2	100	0	58	0	51	0	48	1.00
126114--126142	11	2.7	11	94	5	51	27	13	0	58	1.36
126154--126211	26	2.1	28	84	12	75	68	5	8	17	1.33
126214--126265	15	3.5	15	79	7	54	73	1	0	25	0.94
132167--132210	21	2.2	20	84	12	54	63	9	13	13	1.51
133257--133291	14	2.6	14	90	4	54	48	2	5	42	1.41
134849--134881	16	2.2	15	89	10	50	54	0	0	45	0.99
135050--135144	34	2.8	33	81	6	102	48	5	2	44	1.37
139774--139798	2	12.5	2	100	0	50	48	0	0	52	1.00
140399--140680	117	2.4	117	80	6	320	39	11	5	43	1.64
140400--140681	59	4.8	58	76	6	277	39	11	5	43	1.64
140699--140775	6	13.0	6	82	12	81	79	0	2	18	0.85
140801--140832	3	10.7	3	93	0	55	65	0	3	31	1.08
140713--140832	9	13.6	9	68	19	56	70	2	2	25	1.13
141276--141329	19	2.8	19	82	0	72	44	18	16	20	1.87
141680--141749	23	3.2	21	84	13	88	60	0	4	35	1.17
141680--141802	3	37.3	3	74	18	70	60	1	4	33	1.28
141673--141749	20	3.8	20	81	11	77	61	0	5	33	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141816--141857	14	3.2	13	77	9	50	76	2	2	19	1.01
142135--142268	45	3.0	44	90	3	189	49	19	8	22	1.76
142190--142260	23	3.1	24	64	12	58	43	23	9	22	1.83
142194--142266	22	3.3	22	66	11	58	46	19	9	24	1.79
142189--142486	42	7.1	42	78	6	248	39	18	12	28	1.87
143504--143544	12	3.4	12	82	0	55	7	4	0	87	0.65
143492--143549	22	2.5	24	83	11	75	12	10	0	77	0.99
143506--143547	8	5.2	8	80	11	50	9	4	0	85	0.72
152868--152928	22	2.8	22	85	2	70	36	16	18	29	1.92
152883--152928	21	2.1	22	88	4	67	36	15	15	32	1.88
154199--154251	14	3.9	14	75	2	54	66	1	0	32	1.03
154358--154485	64	2.0	64	92	0	211	18	13	8	59	1.59
155304--155341	20	1.9	20	100	0	76	28	18	10	42	1.83
156589--156632	19	2.2	20	92	4	72	68	0	0	31	0.90
156589--156637	18	2.8	18	81	9	57	65	0	0	34	0.93
164276--164414	73	2.0	70	83	9	178	39	12	20	27	1.88
168204--168242	21	1.9	20	84	5	51	38	10	2	48	1.51
168549--168574	12	2.2	12	100	0	52	42	7	7	42	1.62
170442--170491	26	1.9	26	84	8	66	18	4	6	72	1.22
173063--173110	2	25.5	2	87	12	75	0	47	0	52	1.00
180461--180522	30	2.1	30	100	0	124	24	16	19	40	1.91
185594--185638	2	22.5	2	90	0	72	48	2	2	46	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
193830--193908	38	2.1	39	95	2	142	35	26	24	13	1.93
194606--194632	2	13.5	2	100	0	54	48	0	0	51	1.00
210920--210953	12	2.7	12	90	9	50	61	0	0	38	0.96
212796--212868	18	4.0	18	73	8	67	52	1	0	46	1.09
212821--212867	11	4.4	10	80	20	51	57	2	0	40	1.11
212801--212878	32	2.5	31	81	10	86	55	2	0	42	1.13
212824--212879	23	2.5	22	85	11	69	58	3	0	37	1.15
219903--219927	2	12.5	2	100	0	50	0	52	0	48	1.00
223882--223954	31	2.4	30	88	9	103	43	0	0	56	0.99
226078--226107	15	2.0	15	100	0	60	20	26	20	33	1.97
227628--227675	2	24.0	2	100	0	96	0	50	0	50	1.00
233395--233421	4	6.8	4	100	0	54	51	0	0	48	1.00
235165--235197	2	16.5	2	100	0	66	51	0	0	48	1.00
237879--237909	1	31.0	1	100	0	62	100	0	0	0	0.00
245246--245290	22	2.0	22	100	0	90	35	37	4	22	1.74
254858--254889	2	16.0	2	93	0	55	50	3	0	46	1.17
271840--271866	13	2.1	13	100	0	54	22	14	7	55	1.64
275621--275650	6	5.0	6	95	0	51	3	30	50	16	1.62
279093--279123	2	15.5	2	100	0	62	0	48	0	51	1.00
288770--288847	36	2.0	37	85	11	104	50	11	2	35	1.53
301764--301795	2	16.0	2	100	0	64	50	0	0	50	1.00
305759--305791	16	2.1	16	100	0	66	51	12	0	36	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305947--305986	19	2.1	19	90	0	62	27	7	0	65	1.20
310312--310352	22	1.9	21	85	5	55	53	4	0	41	1.22
310354--310476	30	4.2	29	79	7	115	50	0	5	43	1.31
310367--310476	30	3.7	30	78	6	118	53	0	5	40	1.24
316868--316927	29	2.1	29	81	6	68	51	1	5	41	1.33
318501--318539	2	19.5	2	100	0	78	51	0	48	0	1.00
328308--328337	2	15.0	2	100	0	60	0	50	0	50	1.00
328337--328377	2	20.5	2	94	0	73	46	51	2	0	1.14
337065--337110	20	2.3	20	100	0	92	28	4	10	56	1.53
338005--338029	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113