genome.fa.s68.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  104  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20506799--20506841	19	2.2	19	95	4	77	11	4	0	83	0.78
20508866--20508912	23	1.9	25	83	12	62	40	10	4	44	1.59
20508985--20509047	29	2.2	28	80	8	72	74	9	0	15	1.06
20509501--20509572	31	2.3	31	76	4	74	55	15	5	23	1.61
20512029--20512081	23	2.2	24	93	3	90	13	18	3	64	1.43
20512201--20512256	14	3.6	15	72	13	51	67	0	19	12	1.22
20514714--20514784	24	2.8	25	80	4	81	49	1	0	49	1.09
20514720--20514800	26	3.2	26	78	3	76	50	1	2	45	1.22
20514756--20514815	31	1.9	31	89	0	93	55	0	3	41	1.16
20516933--20516981	21	2.4	21	80	6	57	48	0	0	51	1.00
20516953--20517004	15	3.7	15	77	15	56	50	0	0	50	1.00
20516929--20517003	19	3.9	18	75	17	62	46	0	0	53	1.00
20516956--20517012	27	2.1	27	90	6	89	50	0	0	49	1.00
20516954--20517015	19	3.4	18	79	14	65	50	0	0	50	1.00
20516955--20517014	8	7.2	8	76	12	50	51	0	0	48	1.00
20517272--20517320	19	2.6	19	75	9	55	44	0	2	53	1.12
20519232--20519290	31	1.9	31	89	0	91	37	10	15	37	1.81
20520315--20520345	16	1.9	16	93	0	53	87	6	6	0	0.68
20520804--20520846	22	2.0	22	95	0	77	48	9	30	11	1.71
20522656--20522994	59	5.8	57	84	7	416	43	6	13	36	1.69
20522906--20522995	27	3.1	27	64	23	67	37	6	15	40	1.74
20523734--20523773	20	2.0	20	95	0	71	5	22	25	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20528595--20528621	10	2.7	10	100	0	54	14	0	7	77	0.97
20528587--20528648	20	3.0	21	76	9	65	12	0	6	80	0.89
20528606--20528648	22	2.0	22	86	9	61	13	0	4	81	0.84
20528630--20528748	10	11.2	10	68	19	55	19	4	3	73	1.15
20528614--20528655	12	3.2	13	83	10	59	16	0	2	80	0.81
20528673--20528760	20	4.6	19	73	5	61	15	6	1	76	1.06
20528690--20528745	24	2.3	24	85	8	78	12	3	1	82	0.88
20528763--20528934	58	2.9	57	86	4	236	45	6	13	33	1.71
20532817--20532893	10	7.4	10	85	11	102	80	0	11	7	0.90
20532799--20532872	9	7.7	9	81	14	69	78	0	13	8	0.96
20532800--20532909	11	11.4	9	75	18	57	79	0	12	8	0.94
20532814--20532893	11	7.5	11	86	10	114	80	0	12	7	0.91
20532935--20533212	138	2.0	140	92	1	470	41	16	22	20	1.91
20534244--20534356	42	2.7	42	91	0	190	23	17	23	35	1.95
20534329--20534382	26	2.1	26	100	0	108	25	18	22	33	1.97
20534287--20534423	68	2.0	67	94	1	238	24	18	22	35	1.96
20534355--20534663	41	7.5	41	91	5	498	22	16	23	37	1.93
20534245--20534465	110	2.0	110	93	0	381	23	17	23	36	1.94
20534355--20534671	83	3.8	83	92	3	532	22	16	23	37	1.93
20534355--20534799	124	3.7	123	84	11	580	23	15	23	37	1.93
20534603--20534732	66	2.0	67	95	1	235	28	12	20	38	1.89
20534670--20534799	41	3.1	41	88	2	188	25	15	23	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20534807--20534846	8	4.9	8	93	6	71	87	12	0	0	0.54
20535059--20535089	3	10.7	3	93	6	55	32	0	0	67	0.91
20535051--20535086	14	2.6	13	87	12	54	33	0	0	66	0.92
20535146--20535179	18	1.9	18	88	5	52	17	8	2	70	1.25
20535144--20535235	40	2.3	41	77	19	104	17	9	2	70	1.24
20536042--20536099	10	6.2	9	76	11	55	10	3	3	82	0.90
20536043--20536103	14	4.2	13	78	14	50	11	3	3	81	0.92
20536057--20536099	19	2.2	19	87	4	59	11	4	2	81	0.93
20536151--20536210	9	6.4	9	82	5	66	15	6	0	78	0.95
20536151--20536200	19	2.6	19	87	3	73	14	6	0	80	0.90
20536151--20536210	19	3.2	18	81	11	59	15	6	0	78	0.95
20536163--20536210	19	2.6	18	87	9	62	16	4	0	79	0.89
20536151--20536205	28	1.9	29	85	3	76	14	5	0	80	0.89
20536213--20536562	58	5.9	57	86	5	484	46	6	13	33	1.70
20540462--20540487	13	2.0	13	100	0	52	23	0	0	76	0.78
20540535--20540574	19	2.2	18	95	4	71	77	5	0	17	0.94
20540502--20540574	28	2.7	27	78	14	78	73	8	0	17	1.06
20540531--20540575	19	2.6	18	86	13	67	75	4	0	20	0.97
20541597--20542054	41	10.9	43	80	6	420	43	19	13	24	1.86
20542359--20542437	20	3.8	21	76	5	61	32	13	12	40	1.83
20543722--20543767	8	5.9	8	84	5	58	10	6	0	82	0.83
20543729--20543784	23	2.4	24	85	8	80	12	12	0	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20543715--20543784	8	8.9	8	77	13	56	11	11	0	77	1.00
20545901--20545962	28	2.2	27	78	13	72	72	9	0	17	1.10
20551676--20551746	24	2.8	25	80	4	81	49	1	0	49	1.09
20551643--20551762	26	4.7	26	73	9	77	49	1	1	47	1.21
20551718--20551777	31	1.9	31	89	0	93	55	0	3	41	1.16
20553942--20553999	19	3.0	19	85	12	66	60	1	0	37	1.07
20553951--20554019	19	3.3	20	75	13	52	60	2	0	36	1.11
20554412--20554484	29	2.4	29	84	4	92	46	4	0	49	1.21
20554613--20554670	29	1.9	31	89	6	93	39	0	0	60	0.97
20554976--20555005	15	2.0	15	93	0	51	40	10	0	50	1.36
20557499--20557540	21	2.0	22	90	4	68	66	2	2	28	1.16
20558858--20558919	24	2.6	24	81	0	79	62	1	3	32	1.20
20558878--20558933	13	4.1	13	76	13	58	64	0	1	33	1.04
20558978--20559039	30	2.0	31	84	9	83	50	4	3	41	1.40
20561416--20561459	18	2.7	18	86	13	60	59	0	0	40	0.98
20562716--20562783	28	2.4	28	80	9	77	30	4	4	60	1.36
20562743--20562848	29	3.8	28	74	17	76	33	5	4	55	1.44
20562770--20562848	37	2.1	37	83	0	95	34	5	6	54	1.48
20562914--20563010	9	10.5	8	72	19	50	31	0	5	62	1.17
20562923--20563010	28	3.1	28	79	12	90	30	0	5	63	1.17
20562992--20563028	15	2.4	16	82	13	51	37	0	2	59	1.12
20563006--20563077	33	2.2	34	82	7	94	37	2	1	58	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20564668--20564730	24	2.5	26	80	7	69	47	4	3	44	1.40
20566791--20566858	30	2.3	29	84	5	82	19	4	2	73	1.13
20567827--20567925	49	2.0	49	86	0	135	30	10	16	43	1.80
20569757--20569811	28	2.1	26	83	10	67	69	5	1	23	1.19
20576657--20576691	2	17.5	2	100	0	70	0	48	0	51	1.00
20581291--20581353	23	3.0	22	72	19	62	47	9	3	39	1.52
20582547--20582613	28	2.3	28	82	10	73	43	4	0	52	1.21
20582982--20583038	23	2.4	21	73	21	51	42	1	0	56	1.10
20584081--20584157	23	3.5	22	77	16	72	48	0	1	50	1.09
20584086--20584125	20	2.0	19	85	9	53	52	0	0	47	1.00
20584094--20584178	25	3.3	26	71	11	68	50	0	2	47	1.14
20584434--20584521	46	1.9	46	86	4	124	54	0	0	45	0.99
20590649--20590683	18	2.0	18	88	5	54	42	0	2	54	1.15
20598528--20598571	18	2.4	18	85	11	54	47	0	0	52	1.00
20599879--20599951	6	11.5	6	72	16	58	75	2	1	20	1.00
20599883--20599949	24	3.0	23	83	14	70	76	2	1	19	1.00
20602821--20602877	29	2.0	29	96	0	105	33	7	26	33	1.83
20606054--20606103	7	7.0	7	82	11	57	52	2	2	44	1.24
20608620--20608655	18	2.0	18	88	0	54	50	0	0	50	1.00
20608720--20608779	29	2.0	30	83	3	77	46	3	3	46	1.35
20608898--20608927	13	2.3	13	94	0	51	86	0	0	13	0.57
20609091--20609132	3	14.0	3	94	0	75	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20609468--20609499	14	2.4	14	94	5	57	75	18	6	0	1.01
20610131--20610158	10	2.8	10	100	0	56	21	0	0	78	0.75
20616786--20616826	17	2.4	17	91	0	64	21	26	12	39	1.89
20620883--20620918	18	1.9	19	88	5	56	38	0	0	61	0.96
20621481--20621532	28	2.0	25	81	11	59	75	5	0	19	1.01
20621481--20621539	26	2.3	26	83	11	70	74	5	0	20	1.00
20622264--20622293	16	1.9	16	93	6	53	56	0	0	43	0.99
20626515--20626591	4	19.0	4	75	12	68	19	5	1	74	1.08
20626480--20626578	41	2.4	40	77	14	94	20	6	2	71	1.17
20626509--20626591	17	4.9	16	77	14	69	19	6	1	73	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113