genome.fa.s68.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  91  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18910607--18910730	37	3.3	37	79	7	115	25	12	5	56	1.57
18917844--18917905	26	2.3	28	75	13	67	54	1	4	38	1.31
18927206--18927250	2	23.0	2	90	4	74	48	0	2	48	1.13
18929540--18929575	17	2.1	17	100	0	72	33	0	13	52	1.41
18931087--18931127	22	2.0	21	85	9	57	36	2	0	60	1.10
18932204--18932249	14	3.4	14	79	11	60	32	0	0	67	0.91
18932198--18932249	26	2.0	27	92	3	88	30	0	0	69	0.89
18933513--18933587	8	9.1	8	71	16	55	70	0	1	28	0.95
18933515--18933585	17	4.3	17	72	16	60	70	0	1	28	0.96
18933560--18933603	23	1.9	24	86	9	65	72	2	0	25	0.96
18939391--18939420	8	3.8	8	90	0	51	0	0	10	90	0.47
18939977--18940037	25	2.5	26	76	15	67	63	6	3	26	1.34
18940054--18940082	5	5.8	5	100	0	58	41	0	0	58	0.98
18940177--18940207	11	2.8	11	100	0	62	54	0	19	25	1.44
18940357--18940391	18	1.9	18	94	0	61	25	25	5	42	1.77
18944917--18944947	8	3.9	8	95	0	53	64	3	0	32	1.09
18946618--18946691	38	1.9	38	86	0	103	45	17	8	28	1.77
18947171--18947198	4	7.0	4	100	0	56	75	25	0	0	0.81
18947241--18947274	11	3.1	11	91	0	59	50	8	14	26	1.72
18948496--18948568	27	2.8	25	78	12	69	49	16	2	31	1.60
18956320--18956356	19	1.9	19	88	0	56	35	8	13	43	1.74
18958225--18958284	30	2.0	30	93	0	102	43	23	6	26	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18961544--18961579	14	2.6	14	90	0	54	36	5	2	55	1.38
18964498--18964527	14	2.1	14	100	0	60	53	6	6	33	1.53
18974724--18974776	22	2.4	22	87	0	70	73	15	3	7	1.20
18975051--18975097	20	2.3	20	89	7	69	61	12	10	14	1.56
18977185--18977218	17	2.0	17	88	0	50	38	8	2	50	1.49
18977806--18978090	145	2.0	145	79	4	315	36	15	9	38	1.80
18979624--18979658	18	1.9	18	94	0	61	48	0	14	37	1.44
18991176--18991214	10	3.8	10	83	6	51	0	25	0	74	0.82
18991177--18991214	15	2.5	15	87	12	51	0	23	0	76	0.79
18997135--18997159	13	1.9	13	100	0	50	36	8	0	56	1.29
18999296--18999320	2	12.5	2	100	0	50	48	0	0	52	1.00
19000846--19000883	20	1.9	20	88	0	58	60	2	28	7	1.38
19000872--19000906	18	2.0	18	88	5	54	60	0	20	20	1.37
19001128--19001173	4	12.0	4	79	9	51	19	2	4	73	1.10
19001130--19001173	15	2.9	16	86	10	65	18	2	4	75	1.09
19001128--19001173	19	2.4	19	85	0	56	19	2	4	73	1.10
19001311--19001898	59	9.8	59	80	13	571	48	5	12	33	1.63
19001351--19001833	120	3.9	129	80	10	478	49	4	12	33	1.62
19001503--19001538	19	1.9	19	88	5	56	47	5	5	41	1.50
19006354--19006395	22	1.9	22	81	18	52	16	0	23	59	1.37
19006372--19006460	14	6.4	14	67	13	58	20	0	28	51	1.47
19006499--19006540	21	2.0	22	90	4	68	21	0	30	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19006483--19006562	30	2.8	28	81	10	90	18	2	30	48	1.61
19006376--19006575	14	13.9	15	63	16	57	21	2	29	48	1.61
19006517--19006581	21	2.9	21	76	17	60	21	1	30	46	1.61
19006532--19006598	21	3.1	22	76	4	66	19	1	29	49	1.57
19006555--19006623	28	2.4	29	73	9	70	21	0	26	52	1.47
19007080--19007124	7	6.1	8	89	10	62	77	0	0	22	0.76
19007081--19007124	21	2.0	22	91	4	72	77	0	0	22	0.77
19008477--19008582	37	2.9	37	78	5	108	41	17	28	12	1.86
19008585--19008631	22	2.1	22	92	0	76	29	10	23	36	1.89
19008760--19008813	22	2.5	22	85	11	83	29	14	25	29	1.95
19008725--19009003	131	2.1	132	82	4	332	41	16	17	24	1.89
19008891--19008949	22	2.7	22	86	0	82	38	15	15	30	1.88
19008954--19009118	87	1.9	88	82	1	206	43	15	18	23	1.88
19008816--19009248	219	2.0	217	82	1	535	41	15	17	25	1.88
19009036--19009270	131	1.8	131	81	4	278	40	14	18	26	1.89
19009352--19009414	22	2.9	22	95	0	108	25	14	26	33	1.94
19009438--19009508	36	2.0	36	83	5	90	43	14	19	22	1.87
19009256--19009567	153	2.0	153	85	1	419	35	16	21	26	1.94
19009503--19009573	22	3.2	22	80	9	81	33	15	21	29	1.94
19009374--19009845	131	3.6	131	81	5	459	38	15	19	26	1.92
19009407--19009917	131	3.9	131	78	4	445	39	15	19	25	1.91
19010431--19010489	23	2.4	25	86	5	77	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19012047--19012072	12	2.2	12	100	0	52	0	0	7	92	0.39
19016874--19016912	20	2.0	21	85	10	55	23	7	2	66	1.30
19016874--19016911	19	2.0	20	85	15	53	23	7	2	65	1.32
19018684--19018725	22	1.9	22	85	9	59	14	0	26	59	1.35
19018751--19018904	14	10.7	14	66	16	57	18	3	30	48	1.64
19018886--19018953	28	2.4	28	80	7	84	19	0	27	52	1.46
19019207--19019248	3	13.7	3	80	14	50	28	2	4	64	1.26
19019207--19019242	14	2.6	14	90	0	54	27	2	5	63	1.30
19022221--19022423	58	3.5	59	92	2	329	37	11	8	42	1.71
19023863--19023902	21	1.9	21	94	0	71	0	27	12	60	1.33
19024547--19024777	43	5.4	43	82	7	238	45	16	12	25	1.83
19024567--19024794	42	5.4	42	81	8	214	42	17	14	25	1.87
19025408--19025454	22	2.1	23	92	4	78	31	27	4	36	1.76
19025416--19025474	22	2.7	21	84	5	73	37	23	6	32	1.81
19025855--19025988	62	2.2	62	80	12	159	30	29	9	29	1.89
19026742--19026798	20	3.0	20	69	21	50	7	21	0	71	1.08
19026741--19026799	30	1.9	32	89	6	95	6	22	0	71	1.09
19030777--19031105	119	2.8	115	86	6	464	37	11	7	43	1.68
19030777--19031105	60	5.6	59	87	5	436	37	11	7	43	1.68
19030782--19031105	177	1.8	176	86	5	467	37	11	7	43	1.68
19030777--19031111	117	2.9	117	84	5	446	37	11	7	44	1.67
19031105--19031143	16	2.5	16	87	4	53	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19039204--19039302	46	2.2	46	85	5	130	50	8	17	24	1.72
19040307--19040539	85	2.7	85	86	0	313	21	15	15	48	1.80
19040543--19040819	113	2.5	113	87	3	391	21	16	14	46	1.83
19040809--19041066	81	3.1	81	81	3	257	23	16	13	46	1.82
19042253--19043047	60	13.5	59	83	6	952	46	6	13	33	1.68
19042253--19043043	235	3.4	234	88	4	1121	46	6	13	33	1.68
19044661--19044698	19	2.0	19	94	0	67	50	5	5	39	1.48
19045245--19045299	27	2.0	28	82	10	69	72	1	0	25	0.94
19045256--19045299	19	2.2	19	84	12	52	77	0	0	22	0.77
19047273--19047488	57	3.9	56	78	4	186	57	10	6	25	1.57
19047306--19047488	54	3.3	56	76	3	154	57	9	7	26	1.56
19049216--19049292	32	2.4	32	82	0	100	44	0	2	53	1.14
19050724--19050887	84	2.0	84	81	2	195	35	17	13	32	1.89
19055121--19055165	15	3.0	15	83	6	56	37	2	2	57	1.23
19055597--19055660	25	2.6	25	92	0	101	51	1	0	46	1.10
19064289--19064365	24	3.2	25	80	9	97	50	16	5	27	1.66
19064297--19064381	24	3.6	24	70	10	68	55	12	3	28	1.54
19064360--19064479	20	6.0	20	76	11	111	54	8	1	35	1.41
19064360--19064486	60	2.1	59	88	2	182	53	8	1	36	1.41
19064401--19064450	10	5.0	10	72	18	50	56	12	0	32	1.36
19064402--19064572	20	8.6	20	76	15	106	52	10	4	32	1.55
19064393--19064574	40	4.6	38	75	16	120	52	9	3	34	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19064389--19064565	60	3.0	58	80	12	173	52	10	3	33	1.52
19064464--19064574	39	2.8	40	80	14	124	51	9	6	32	1.60
19064607--19064645	19	2.1	19	85	0	51	79	7	7	5	1.05
19064603--19064646	24	1.9	22	86	9	61	77	9	9	4	1.12
19064588--19064640	27	2.0	27	81	7	63	79	5	7	7	1.06
19066201--19066245	23	1.9	24	86	4	65	64	15	0	20	1.29
19066639--19066783	55	2.7	53	82	5	166	45	4	11	39	1.59
19066749--19066867	54	2.2	54	82	5	136	47	5	11	34	1.64
19073512--19073541	14	2.1	14	100	0	60	80	0	6	13	0.91
19074465--19074621	58	2.7	57	88	4	219	51	12	14	22	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113