genome.fa.s68.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  57  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14218264--14218388	22	5.7	22	78	5	110	36	6	7	50	1.56
14218307--14218372	21	3.1	20	80	10	69	39	1	6	53	1.35
14218411--14218628	22	9.9	22	74	8	129	35	10	4	49	1.57
14218440--14218618	66	2.7	66	73	4	155	34	10	4	51	1.56
14218660--14218744	22	3.9	22	79	11	84	37	10	3	48	1.55
14219057--14219118	22	2.8	23	83	13	78	37	14	4	43	1.67
14219064--14219133	22	3.2	21	86	8	86	35	11	5	47	1.64
14219147--14219205	22	2.7	22	76	5	57	37	6	11	44	1.68
14219186--14219227	22	1.9	22	85	0	57	40	2	9	47	1.49
14219306--14219369	22	2.9	21	86	4	83	40	7	6	45	1.58
14219306--14219371	11	6.0	11	71	7	53	39	9	6	45	1.61
14219426--14219632	22	9.5	22	71	7	118	37	8	4	49	1.54
14219496--14219632	65	2.1	66	83	4	170	36	7	7	48	1.59
14219771--14219825	22	2.5	22	76	5	58	38	10	3	47	1.56
14219953--14220021	21	3.2	21	80	10	86	39	5	4	50	1.46
14219859--14220012	22	7.1	22	77	5	118	37	12	5	44	1.66
14221543--14221778	118	2.0	118	98	0	456	56	9	3	29	1.49
14222349--14222378	2	15.0	2	100	0	60	50	0	0	50	1.00
14223920--14224011	39	2.4	39	88	1	132	15	1	61	21	1.39
14224258--14224295	20	2.0	20	89	5	60	34	0	5	60	1.19
14224522--14224570	25	1.9	26	91	4	82	46	2	10	40	1.49
14227292--14227324	15	2.1	16	88	5	50	24	0	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14227983--14228014	6	5.3	6	92	0	55	18	0	50	31	1.48
14228353--14228482	18	7.2	18	72	10	79	33	32	4	29	1.78
14228364--14228404	21	2.0	21	95	0	73	26	39	2	31	1.70
14232688--14232720	14	2.4	14	94	0	57	33	9	18	39	1.82
14238391--14238443	19	2.6	19	79	8	52	49	0	0	50	1.00
14238392--14238453	13	4.5	13	73	16	54	46	3	0	50	1.17
14238572--14238620	23	2.1	25	85	11	68	40	0	2	57	1.10
14239829--14239862	2	17.0	2	93	0	59	47	0	2	50	1.16
14249437--14249472	3	11.7	3	94	5	63	33	66	0	0	0.92
14250594--14250653	29	2.1	29	84	6	77	51	0	1	46	1.10
14251444--14251474	6	5.2	6	100	0	62	0	16	32	51	1.44
14255974--14256012	20	2.0	20	94	0	69	33	2	28	35	1.71
14260354--14260409	21	2.7	21	76	15	62	50	0	8	41	1.34
14270176--14270234	30	2.0	30	100	0	118	37	10	27	25	1.88
14274498--14274528	2	15.5	2	100	0	62	51	0	0	48	1.00
14282479--14282520	3	14.0	3	100	0	84	66	0	0	33	0.92
14282586--14282626	14	2.8	15	86	13	59	31	0	2	65	1.05
14282614--14282671	26	2.2	27	87	3	82	32	1	5	60	1.29
14285803--14285833	4	7.8	4	100	0	62	25	0	25	48	1.52
14289285--14289347	28	2.5	23	71	24	54	33	15	11	39	1.83
14290447--14290490	2	22.0	2	95	0	79	50	2	0	47	1.13
14293432--14293470	20	2.0	20	100	0	78	25	10	17	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14294709--14294775	33	2.0	33	100	0	134	29	2	31	35	1.73
14295459--14295512	18	2.9	18	94	5	90	66	0	25	7	1.17
14297711--14297740	2	15.0	2	100	0	60	50	0	0	50	1.00
14300180--14300204	11	2.3	11	100	0	50	92	0	8	0	0.40
14302903--14302953	3	17.0	3	100	0	102	33	0	0	66	0.92
14303128--14303176	23	2.1	23	88	7	73	48	4	10	36	1.56
14304474--14304511	3	12.7	3	94	0	67	63	0	2	34	1.09
14306636--14306665	9	3.4	9	95	4	53	60	0	0	40	0.97
14306722--14306765	19	2.2	20	84	4	54	52	2	0	45	1.13
14307228--14307981	72	10.5	73	73	12	472	39	9	5	45	1.59
14307713--14307836	64	2.0	63	87	4	178	39	11	3	45	1.56
14307776--14308000	70	3.2	70	79	5	256	40	7	5	46	1.54
14315899--14315924	2	13.0	2	100	0	52	50	0	0	50	1.00
14317673--14317746	26	3.0	22	73	21	67	52	0	4	43	1.20
14317820--14317857	19	1.9	19	89	5	58	47	0	0	52	1.00
14318741--14318803	21	2.9	22	80	17	69	25	3	4	66	1.26
14318906--14318995	47	1.9	46	82	13	112	20	7	4	67	1.33
14319313--14319349	19	1.9	19	100	0	74	27	18	21	32	1.97
14319391--14319434	20	2.2	20	91	0	70	34	34	25	6	1.82
14319450--14319496	20	2.4	20	85	3	60	23	27	19	29	1.98
14319839--14319870	8	3.9	8	95	4	55	12	0	9	78	0.97
14319839--14319870	17	1.9	16	93	6	55	12	0	9	78	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14319937--14319976	17	2.3	17	86	4	53	10	7	0	82	0.84
14319917--14319971	23	2.3	25	84	6	78	10	5	3	80	1.01
14320002--14320273	57	4.7	57	88	5	406	43	8	14	33	1.77
14330521--14330569	15	3.5	14	81	13	57	40	4	0	55	1.19
14330521--14330572	27	1.9	26	85	14	70	40	3	0	55	1.18
14330639--14330672	18	1.9	17	88	5	50	32	5	2	58	1.37
14330832--14330867	15	2.4	15	86	13	56	38	2	0	58	1.13
14334553--14335048	43	11.6	42	73	10	213	41	13	16	28	1.86
14334526--14334832	85	3.6	84	74	11	230	39	14	17	28	1.89
14334526--14335049	129	4.1	130	75	11	316	40	14	16	29	1.87
14334639--14335045	86	4.7	86	75	9	337	42	14	15	28	1.85
14339044--14339419	58	6.4	58	88	5	544	35	12	7	44	1.70
14339044--14339419	117	3.2	116	89	3	549	35	12	7	44	1.70
14339467--14339519	6	8.7	6	78	12	54	81	1	3	13	0.92
14339449--14339518	17	3.9	17	80	14	70	78	2	4	14	1.02
14339467--14339518	11	4.8	11	81	9	54	80	1	3	13	0.93
14339444--14339533	22	4.2	23	72	16	68	75	2	5	16	1.09
14339542--14339580	12	3.2	12	81	3	51	79	2	0	17	0.84
14340627--14340696	6	11.2	6	82	11	79	78	1	1	18	0.90
14340580--14340696	39	2.9	39	84	7	128	75	1	2	20	1.01
14340578--14340697	45	2.7	45	83	8	138	75	1	2	20	1.01
14340622--14340708	11	7.7	10	74	22	50	78	1	3	17	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14340633--14340696	17	3.8	17	75	6	67	79	1	1	17	0.89
14340864--14340894	14	2.3	14	94	5	55	6	0	3	90	0.55
14340924--14341158	42	5.6	42	81	9	250	37	22	16	24	1.93
14340901--14341158	41	6.1	41	85	4	275	36	22	17	24	1.95
14340901--14341158	83	3.1	82	83	6	295	36	22	17	24	1.95
14342387--14342420	16	2.1	16	94	0	59	8	17	0	73	1.08
14342411--14342469	24	2.4	23	75	10	64	10	16	0	72	1.10
14342439--14342472	17	2.1	16	89	10	52	8	14	0	76	1.01
14342403--14342476	26	2.6	29	81	10	91	10	18	0	70	1.16
14345224--14345274	21	2.4	21	100	0	102	37	7	15	39	1.77
14346349--14346377	6	4.8	6	100	0	58	68	13	0	17	1.20
14346406--14346863	59	7.7	58	85	5	562	35	12	7	45	1.70
14346406--14346863	119	3.9	118	86	6	622	35	12	7	45	1.70
14346746--14346842	32	3.2	32	64	24	91	34	14	10	41	1.80
14346763--14346853	27	3.2	27	64	24	69	36	16	7	39	1.77
14346889--14346943	5	10.4	5	81	11	65	76	1	5	16	1.06
14346893--14346958	27	2.5	26	85	11	89	74	1	6	18	1.10
14346892--14346943	11	4.8	11	77	11	54	76	1	5	15	1.05
14346967--14347006	21	1.9	21	89	0	62	77	2	0	20	0.88
14347500--14347524	10	2.5	10	100	0	50	60	24	0	16	1.36
14347956--14348060	20	5.1	20	72	13	70	74	1	3	20	1.07
14363093--14363128	17	2.1	17	89	5	54	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14363095--14363146	26	2.0	27	88	3	79	46	0	1	51	1.12
14363096--14363153	26	2.2	26	84	6	73	46	0	1	51	1.11
14364737--14365200	245	1.9	244	81	6	555	34	12	15	37	1.85
14365013--14365349	179	1.9	177	80	7	387	35	10	16	37	1.83
14365585--14365675	35	2.6	35	80	0	110	35	10	14	39	1.81
14368957--14368991	13	2.8	12	83	8	52	48	22	5	22	1.72
14369612--14369882	124	2.2	124	88	0	398	40	12	13	34	1.81
14369626--14369818	63	3.1	63	64	16	148	38	13	13	34	1.84
14369559--14370389	310	2.7	308	86	2	1089	40	11	13	34	1.81
14369925--14370181	124	2.1	124	90	1	399	38	11	14	35	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113