genome.fa.s68.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  46  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12421442--12421576	21	6.3	21	78	5	110	48	7	5	37	1.56
12421521--12421586	21	3.1	21	81	12	73	51	10	6	31	1.61
12422526--12422579	25	2.1	24	83	13	63	42	5	1	50	1.36
12425115--12425177	11	5.6	11	77	17	51	53	0	1	44	1.10
12426767--12426811	16	3.0	16	71	18	51	73	0	4	22	1.01
12428246--12428281	2	18.0	2	94	0	63	52	0	47	0	1.00
12430295--12430337	19	2.3	19	84	8	52	2	23	0	74	0.93
12430443--12430472	2	15.0	2	100	0	60	50	0	0	50	1.00
12440471--12440560	24	3.5	26	72	15	80	53	0	0	46	1.00
12441336--12441441	29	3.6	29	80	10	108	43	3	0	52	1.19
12442213--12442253	11	3.7	11	84	12	57	14	2	9	73	1.19
12442326--12442389	25	2.5	25	78	12	69	26	3	9	60	1.42
12442349--12442456	23	4.4	25	73	15	75	36	3	7	52	1.47
12444250--12444283	17	1.9	18	88	5	52	5	26	5	61	1.42
12446598--12446645	20	2.2	23	82	14	66	31	0	0	68	0.90
12446632--12446684	22	2.4	22	84	6	72	45	1	0	52	1.11
12448720--12448747	11	2.5	11	100	0	56	92	7	0	0	0.37
12451796--12451827	14	2.2	15	94	5	57	50	0	6	43	1.27
12455098--12455156	29	2.1	28	81	9	66	44	8	10	37	1.69
12461911--12461953	22	2.0	22	82	17	54	39	11	6	41	1.68
12463939--12463984	21	2.1	21	84	8	56	67	0	0	32	0.91
12466073--12466109	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12467277--12467310	14	2.5	13	90	9	50	52	0	2	44	1.16
12475394--12475660	133	2.0	133	97	0	498	31	16	25	26	1.97
12476012--12476054	3	14.3	3	100	0	86	32	0	0	67	0.91
12480016--12480053	3	12.7	3	100	0	76	34	0	0	65	0.93
12480423--12480462	18	2.2	19	86	13	57	27	0	2	70	1.01
12480423--12480459	17	2.1	19	85	10	51	27	0	2	70	1.01
12480433--12480470	17	2.2	18	86	9	53	31	0	0	68	0.90
12480690--12480738	22	2.2	23	82	10	57	30	2	0	67	1.02
12480457--12481070	256	2.4	255	85	6	748	38	10	7	43	1.68
12482731--12482834	28	3.1	34	65	27	80	38	19	4	37	1.73
12483474--12483516	2	21.5	2	80	0	50	44	4	4	46	1.45
12483467--12483516	16	3.0	16	88	11	82	44	6	6	44	1.53
12483457--12483516	18	3.4	18	88	6	88	45	8	5	41	1.56
12487581--12487618	19	2.1	18	90	5	58	50	2	0	47	1.15
12488381--12488446	12	5.7	12	74	15	50	31	3	0	65	1.08
12488406--12488437	15	2.1	15	94	0	55	34	0	0	65	0.93
12488711--12488785	3	25.0	3	100	0	150	33	0	0	66	0.92
12488844--12488882	3	12.7	3	94	5	69	66	0	0	33	0.92
12489995--12490040	3	15.3	3	100	0	92	65	0	0	34	0.93
12490845--12491233	197	2.0	197	93	1	672	28	14	17	40	1.88
12491471--12491514	23	1.9	23	85	0	61	15	0	13	70	1.17
12491679--12491808	50	2.6	50	83	2	154	40	10	13	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12492283--12492339	23	2.5	23	82	0	69	35	26	14	24	1.93
12492867--12492937	26	2.7	25	82	6	79	32	11	15	40	1.83
12492900--12492966	35	1.9	35	81	6	82	35	10	17	35	1.85
12492987--12493065	32	2.5	32	85	4	106	27	11	18	41	1.85
12493701--12493809	55	2.0	55	94	0	191	30	10	12	46	1.75
12498375--12498441	24	2.8	24	93	4	109	11	11	0	76	1.03
12500354--12500723	187	2.0	191	87	5	547	44	7	24	24	1.78
12501185--12501232	3	16.0	3	100	0	96	33	0	0	66	0.92
12502332--12502387	3	18.7	3	100	0	112	33	0	0	66	0.92
12502746--12502821	18	4.4	17	72	8	55	69	1	2	26	1.09
12506120--12506209	44	2.0	44	89	0	135	43	20	5	31	1.74
12506411--12506454	22	2.0	22	91	8	72	45	13	9	31	1.75
12507012--12507051	20	2.0	20	95	0	71	25	27	25	22	2.00
12507121--12507209	12	8.5	11	68	22	57	26	0	8	64	1.23
12507109--12507162	12	4.3	13	75	11	51	31	0	7	61	1.24
12507104--12507230	62	2.1	60	78	14	138	27	0	7	64	1.21
12507118--12507296	65	2.8	63	79	16	163	26	2	5	64	1.29
12507625--12507678	25	2.2	24	83	6	63	35	5	18	40	1.74
12508191--12508237	12	4.1	11	82	12	51	12	2	4	80	0.94
12508313--12508705	116	3.4	116	92	2	628	44	7	13	34	1.72
12508306--12508710	57	6.9	57	88	6	555	44	8	12	34	1.73
12512498--12512541	22	2.0	22	95	0	79	47	13	6	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12512501--12512553	22	2.4	22	84	6	54	52	9	7	30	1.61
12517939--12517979	2	20.5	2	89	0	64	48	0	0	51	1.00
12517968--12518031	30	2.1	32	94	5	114	43	3	10	42	1.55
12518245--12518274	14	2.1	15	93	6	53	16	6	13	63	1.50
12524017--12524056	13	3.1	13	81	0	53	57	0	0	42	0.98
12524746--12524819	26	3.1	26	70	18	79	40	14	12	32	1.83
12526249--12526273	13	1.9	13	100	0	50	48	8	4	40	1.51
12528300--12528353	25	2.2	24	83	6	63	35	5	18	40	1.74
12528947--12529271	58	5.7	56	92	5	530	45	7	12	34	1.70
12528946--12529271	114	2.9	113	94	5	554	45	7	12	34	1.70
12531437--12531776	41	8.4	41	92	5	554	21	17	24	36	1.94
12531437--12531776	81	4.2	82	92	6	554	21	17	24	36	1.94
12531785--12531895	1	111.0	1	80	0	123	90	8	0	1	0.53
12531785--12531895	17	6.3	17	87	11	145	90	8	0	1	0.53
12531787--12531881	39	2.4	41	92	5	160	91	8	0	0	0.42
12531786--12531895	39	2.8	37	85	11	141	90	8	0	1	0.54
12532243--12532296	22	2.4	24	79	17	71	22	3	3	70	1.19
12532249--12532289	20	2.0	22	90	9	68	21	4	4	68	1.28
12533245--12533467	58	3.8	59	81	15	264	40	8	14	35	1.78
12534700--12534738	19	2.1	19	85	9	53	66	7	0	25	1.18
12538288--12538325	18	2.1	18	95	0	67	39	0	2	57	1.12
12539671--12539714	22	2.0	22	91	8	72	45	13	9	31	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12547603--12547634	2	16.0	2	100	0	64	50	0	0	50	1.00
12553089--12553118	15	2.0	15	100	0	60	46	0	6	46	1.29
12554019--12554098	34	2.4	34	78	0	79	37	10	13	38	1.79
12562006--12562049	22	2.0	22	95	0	79	43	13	11	31	1.80
12567468--12567531	30	2.1	32	91	5	105	43	1	10	43	1.49
12567745--12567774	14	2.1	15	93	6	53	16	6	13	63	1.50
12573508--12573533	13	2.0	13	100	0	52	61	0	0	38	0.96
12578568--12578629	7	8.9	7	75	12	56	80	1	4	12	0.94
12578566--12578626	25	2.3	26	86	5	79	80	1	4	13	0.95
12579925--12579959	18	1.9	18	94	0	61	45	0	2	51	1.16
12581312--12581355	22	2.0	22	91	8	72	45	13	9	31	1.75
12584421--12584454	2	17.5	2	93	6	61	52	0	0	47	1.00
12601688--12601762	35	2.1	36	82	12	91	40	0	1	58	1.06
12602015--12602072	18	3.2	17	76	9	53	48	0	1	50	1.11
12603259--12603300	20	2.1	20	100	0	84	61	9	4	23	1.45
12605051--12605275	111	2.0	109	89	5	346	43	21	16	19	1.88
12605520--12605575	23	2.4	23	90	0	85	26	23	14	35	1.93
12608416--12608451	17	2.1	17	100	0	72	36	22	8	33	1.84
12614119--12614218	50	2.0	50	94	0	173	24	23	12	41	1.88
12615942--12615983	22	1.9	22	90	0	66	52	0	7	40	1.29
12615940--12616000	22	2.7	22	80	10	61	52	3	4	39	1.39
12618368--12618405	19	2.0	19	100	0	76	42	5	15	36	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12619060--12619205	66	2.2	67	82	10	192	26	3	10	60	1.45
12619589--12619651	29	2.1	30	82	8	76	17	1	9	71	1.20
12627289--12627400	56	2.0	56	96	0	206	41	9	17	30	1.82
12629690--12629742	27	2.0	27	82	14	65	24	1	3	69	1.15
12630401--12630430	9	3.2	9	95	4	51	50	0	0	50	1.00
12631644--12631682	10	3.8	10	86	3	51	87	2	2	7	0.73
12637215--12637258	2	22.0	2	95	0	79	52	0	0	47	1.00
12641469--12641521	2	26.5	2	88	0	79	50	3	0	45	1.19
12644897--12645180	144	2.0	143	90	0	451	30	25	9	34	1.88
12656076--12656146	33	2.2	33	94	0	124	36	5	18	39	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113