genome.fa.s68.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  50  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13120285--13120309	13	1.9	13	100	0	50	36	16	8	40	1.77
13128719--13128751	18	1.9	17	88	11	50	78	6	9	6	1.08
13128807--13129004	60	3.3	59	82	6	256	36	9	5	48	1.58
13129047--13129078	4	8.5	4	93	6	50	75	0	0	25	0.81
13129046--13129073	14	2.0	14	100	0	56	71	0	0	28	0.86
13129946--13130016	22	3.2	22	80	11	83	64	1	8	25	1.30
13129963--13130004	17	2.3	18	84	8	50	66	0	4	28	1.12
13130205--13130234	10	2.8	11	90	10	53	0	6	6	86	0.70
13130250--13130582	44	7.9	41	82	8	275	40	20	15	23	1.91
13130253--13130589	41	8.0	41	80	9	281	39	20	15	24	1.91
13130253--13130589	82	4.0	85	80	8	336	39	20	15	24	1.91
13130691--13130752	30	2.1	30	100	0	124	33	16	12	37	1.87
13132774--13132818	22	2.1	21	84	12	56	68	2	4	24	1.19
13132858--13132939	34	2.3	38	87	10	127	74	0	2	23	0.94
13132794--13132939	33	4.2	35	76	10	124	72	1	4	21	1.09
13132760--13132945	37	5.4	34	69	19	109	72	1	4	22	1.11
13132852--13132947	38	2.4	39	81	10	124	75	0	2	22	0.91
13132808--13132948	6	22.3	6	72	20	85	74	1	3	20	1.04
13132808--13132947	30	4.6	29	70	15	106	74	1	3	20	1.05
13133525--13133567	15	2.8	16	89	6	63	25	25	2	46	1.65
13148559--13148807	59	4.2	61	84	5	339	35	10	6	47	1.63
13148546--13148807	120	2.2	119	87	3	373	35	10	6	47	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13148812--13148855	18	2.4	18	85	14	56	77	0	2	20	0.88
13149775--13149867	22	4.2	23	81	11	90	65	1	5	27	1.21
13149813--13149868	3	17.7	3	82	10	67	66	0	3	30	1.09
13150398--13150462	30	2.1	31	83	8	80	50	3	4	41	1.38
13150433--13150474	19	2.2	20	83	12	52	64	7	2	26	1.32
13150577--13150622	11	4.4	10	86	10	65	41	6	0	52	1.27
13150577--13150623	21	2.2	21	85	7	69	42	6	0	51	1.27
13151252--13151290	21	1.9	20	84	5	51	51	7	7	33	1.59
13151913--13151951	16	2.5	15	91	4	60	17	0	2	79	0.84
13151913--13151951	5	7.6	5	88	5	60	17	0	2	79	0.84
13151916--13151958	11	4.0	11	84	6	52	23	0	2	74	0.93
13151911--13151960	21	2.4	21	86	0	73	24	0	2	74	0.93
13151913--13151960	16	3.1	16	82	11	55	20	0	2	77	0.88
13151922--13151966	21	2.1	21	83	0	54	24	0	2	73	0.95
13154693--13154744	21	2.5	21	90	6	79	50	0	0	50	1.00
13154693--13154744	22	2.5	22	93	6	90	50	0	0	50	1.00
13154717--13154773	30	1.9	30	85	0	78	52	1	0	45	1.11
13156683--13156717	2	17.5	2	100	0	70	51	0	0	48	1.00
13157206--13157285	33	2.5	32	84	6	99	43	1	2	52	1.22
13166323--13166357	17	2.0	17	88	5	52	85	0	11	2	0.69
13172507--13172567	30	2.0	30	83	0	77	14	18	21	45	1.84
13172519--13172612	32	3.0	31	84	9	120	14	13	21	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13172613--13172732	32	3.8	32	72	7	82	16	12	20	50	1.78
13173302--13173354	3	17.7	3	100	0	106	66	0	0	33	0.92
13175055--13175079	13	1.9	13	100	0	50	16	0	0	84	0.63
13177044--13177078	17	2.1	17	88	0	52	85	11	2	0	0.69
13179678--13179976	34	8.9	34	74	3	212	37	16	16	29	1.91
13179724--13179844	33	3.6	32	76	6	107	39	17	15	27	1.90
13179662--13179984	134	2.4	134	84	1	423	38	16	15	29	1.90
13179818--13180011	101	1.9	102	86	5	277	37	18	17	27	1.92
13179718--13179940	67	3.3	67	73	2	232	37	17	16	27	1.92
13180080--13181220	72	15.9	72	72	8	435	19	18	13	49	1.80
13180093--13181184	35	30.4	36	71	7	403	18	18	13	49	1.79
13180080--13181247	109	10.8	108	73	9	657	19	18	13	49	1.79
13183225--13183305	32	2.6	32	84	3	103	11	13	25	49	1.75
13183313--13183384	32	2.2	32	80	0	81	19	13	18	48	1.81
13184011--13184059	3	16.7	3	95	4	91	65	0	0	34	0.93
13198459--13198502	18	2.4	18	89	10	72	22	4	25	47	1.70
13198609--13198751	72	2.0	71	91	1	232	31	9	19	39	1.84
13200557--13200617	30	2.0	30	81	12	72	8	4	4	81	0.96
13201247--13201286	17	2.4	16	88	12	55	10	10	0	80	0.92
13202352--13202380	13	2.1	14	93	6	51	20	0	24	55	1.44
13208577--13208732	84	1.9	84	88	0	240	35	16	14	33	1.89
13220147--13220192	24	2.0	22	83	8	56	41	10	6	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13220255--13220448	100	1.9	100	85	0	262	31	9	7	51	1.61
13224184--13224372	36	5.4	35	66	15	113	33	14	3	48	1.61
13224193--13224409	103	2.1	103	98	0	416	32	14	4	48	1.65
13224955--13225016	28	2.2	28	77	11	65	51	1	1	45	1.20
13235856--13235900	20	2.2	20	92	0	72	53	2	2	42	1.25
13237439--13237527	25	3.6	25	67	19	69	67	8	4	19	1.35
13237478--13237511	17	2.1	15	89	10	50	73	5	5	14	1.21
13237437--13237546	49	2.2	49	86	1	166	70	8	4	17	1.30
13242991--13243051	30	2.0	30	96	0	113	32	4	13	49	1.63
13243056--13243089	13	2.6	13	85	0	50	50	0	2	47	1.16
13243391--13243472	41	2.0	42	82	2	103	54	2	26	15	1.54
13247000--13247028	11	2.6	11	100	0	58	72	0	27	0	0.85
13247293--13247334	13	3.2	13	86	10	50	26	0	2	71	0.98
13247967--13248063	49	2.0	48	86	8	133	51	6	9	32	1.59
13257818--13257950	43	3.1	43	80	6	162	26	6	13	53	1.64
13262458--13262633	89	2.0	89	94	0	307	40	12	8	38	1.74
13262881--13262951	29	2.5	29	81	6	83	43	4	2	49	1.36
13267556--13267600	18	2.6	17	83	13	56	82	8	4	4	0.94
13269183--13269362	28	6.2	30	75	7	79	48	31	2	17	1.59
13269204--13269367	14	11.4	14	67	12	73	48	31	1	18	1.59
13269204--13269368	28	5.8	28	73	12	122	47	31	1	18	1.59
13269505--13269546	15	2.9	15	78	3	50	50	23	2	23	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13270999--13271037	19	2.1	19	90	0	60	35	20	12	30	1.90
13271406--13271448	14	2.9	15	83	13	54	48	0	0	51	1.00
13271435--13271482	21	2.2	22	92	3	80	47	0	0	52	1.00
13271937--13271993	30	1.9	30	85	0	78	45	0	1	52	1.11
13271966--13272017	22	2.5	22	93	6	90	50	0	0	50	1.00
13272774--13272868	30	3.2	30	82	11	117	47	0	2	50	1.13
13272839--13272920	36	2.3	34	80	13	94	47	0	0	52	1.00
13273188--13273213	2	13.0	2	100	0	52	50	0	0	50	1.00
13273697--13273734	19	2.1	18	95	5	67	34	2	26	36	1.71
13277536--13277576	3	13.7	3	100	0	82	68	0	0	31	0.90
13278939--13278981	22	2.0	22	86	9	61	48	6	4	39	1.51
13279744--13279770	14	1.9	14	100	0	54	48	7	7	37	1.59
13279843--13279926	34	2.5	34	76	0	87	30	16	14	38	1.89
13280951--13280999	19	2.6	19	100	0	98	46	6	8	38	1.58
13281181--13281953	161	4.8	159	76	4	531	42	16	9	32	1.80
13287962--13288296	63	5.3	61	76	7	233	39	10	9	40	1.73
13288081--13288336	65	4.0	62	82	7	266	42	10	8	37	1.72
13287976--13288334	62	5.7	65	76	8	285	39	11	9	38	1.75
13288214--13288786	297	1.9	295	80	4	652	39	11	10	38	1.77
13298978--13299071	47	2.0	47	91	0	152	28	7	21	42	1.80
13299739--13299788	16	3.2	16	72	5	50	62	2	2	34	1.18
13300038--13300088	18	2.7	19	81	6	59	64	3	0	31	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13300180--13300228	19	2.6	19	83	9	64	22	0	4	73	1.00
13300304--13300358	20	2.8	19	72	8	56	41	5	3	49	1.43
13300516--13300570	27	2.0	26	83	13	67	38	5	1	54	1.34
13300732--13300812	28	2.9	26	71	12	63	41	1	4	51	1.31
13300845--13300920	30	2.6	29	75	10	73	27	3	9	59	1.46
13300823--13300911	42	2.2	41	84	11	112	33	2	10	53	1.47
13300913--13300966	11	5.0	10	78	10	54	31	0	3	64	1.11
13300916--13300971	21	2.6	21	78	10	60	28	0	5	66	1.14
13301166--13301215	23	2.2	23	100	0	100	18	4	20	58	1.55
13302443--13302939	60	8.4	58	81	9	524	35	10	6	48	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113