genome.fa.s68.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  17  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5768654--5768706	22	2.4	21	69	9	52	69	3	3	22	1.20
5769064--5769093	3	10.0	3	92	0	51	30	0	3	66	1.07
5790432--5790456	2	12.5	2	100	0	50	52	0	0	48	1.00
5791710--5791762	18	2.9	17	80	8	61	58	0	1	39	1.09
5791710--5791763	17	2.9	19	76	18	60	57	0	1	40	1.09
5791709--5791786	29	2.8	27	75	21	79	56	0	1	42	1.07
5799074--5799105	12	2.6	13	85	14	50	0	46	0	53	1.00
5810563--5810626	20	3.4	20	72	14	73	40	0	1	57	1.08
5811781--5811882	42	2.4	41	82	11	109	47	19	5	27	1.73
5812491--5812517	5	5.4	5	100	0	54	81	18	0	0	0.69
5814305--5816049	582	3.0	581	90	2	2704	38	11	8	40	1.73
5817455--5817515	26	2.4	26	78	8	63	37	1	0	60	1.07
5817773--5817814	20	2.0	21	90	4	68	4	2	26	66	1.23
5820168--5820226	30	2.0	30	86	0	82	40	8	6	44	1.61
5820875--5820912	12	3.1	12	88	7	58	44	0	0	55	0.99
5822624--5822677	27	2.0	28	82	10	67	46	25	7	20	1.77
5825686--5825756	35	2.0	35	91	5	117	26	15	7	50	1.69
5830106--5830143	13	3.0	13	88	3	51	34	2	0	63	1.09
5830110--5830145	13	2.8	13	91	0	54	36	2	0	61	1.11
5837087--5837353	132	2.0	133	91	2	430	38	19	11	29	1.87
5841316--5841370	29	2.0	27	85	7	74	41	5	3	49	1.43
5844946--5845004	19	3.0	19	80	14	66	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5844995--5845033	20	1.9	21	89	5	62	53	0	0	46	1.00
5849307--5849396	31	3.0	30	83	6	110	40	1	1	57	1.13
5849321--5849394	29	2.8	25	75	15	67	40	0	0	59	0.97
5850601--5850676	38	2.0	38	97	0	143	21	7	22	48	1.75
5860383--5860423	2	20.5	2	100	0	82	48	0	0	51	1.00
5860465--5860496	2	16.0	2	93	0	55	50	0	3	46	1.17
5860341--5860496	82	1.9	82	97	0	294	39	7	15	37	1.76
5870117--5870171	27	2.0	28	86	10	78	43	0	1	54	1.10
5871798--5871826	2	14.5	2	100	0	58	48	0	0	51	1.00
5873084--5873116	15	2.2	16	89	10	52	48	0	3	48	1.17
5884376--5884407	2	16.0	2	100	0	64	0	50	0	50	1.00
5889478--5889537	29	2.1	29	83	0	75	53	0	3	43	1.17
5889614--5889677	29	2.2	29	83	5	76	51	1	1	45	1.20
5893696--5893742	23	2.1	22	92	4	76	40	0	2	57	1.11
5893771--5894012	125	1.9	124	80	8	278	38	8	9	43	1.68
5893836--5894141	125	2.5	123	78	7	307	37	9	10	42	1.72
5894375--5894516	60	2.3	60	78	8	153	38	9	5	45	1.61
5894451--5894697	126	2.0	127	81	5	295	44	8	4	42	1.54
5894451--5894740	126	2.3	127	78	8	288	45	7	4	42	1.52
5900067--5900099	16	2.1	16	100	0	66	54	21	0	24	1.45
5900156--5900214	25	2.4	25	82	2	75	44	13	15	27	1.84
5918460--5918504	22	2.0	22	86	0	63	46	2	2	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5918454--5918511	28	2.1	28	80	6	64	50	1	1	46	1.22
5923925--5923978	26	2.1	26	100	0	108	50	5	7	37	1.54
5953673--5953721	21	2.3	21	79	6	55	44	18	6	30	1.74
5953900--5953984	20	4.1	21	71	17	63	55	4	5	34	1.45
5953899--5953971	20	3.5	20	78	10	67	52	6	4	36	1.48
5954027--5954075	10	4.5	11	80	10	57	55	0	2	42	1.11
5954034--5954097	21	3.1	20	82	8	67	54	1	1	42	1.19
5954027--5954075	11	4.5	11	82	5	55	55	0	2	42	1.11
5973367--5973394	3	9.3	3	100	0	56	67	0	0	32	0.91
5974681--5974719	21	1.9	19	90	10	60	69	0	0	30	0.89
5983270--5983470	98	2.1	98	95	0	359	43	8	19	27	1.81
5989020--5989061	19	2.2	19	100	0	84	33	30	23	11	1.91
5996464--5996525	31	2.0	31	81	12	74	48	0	4	46	1.23
6007172--6007213	15	2.9	15	82	3	50	69	0	19	11	1.19
6007336--6007365	15	2.1	15	93	6	53	70	0	10	20	1.16
6008134--6008187	22	2.3	24	78	12	60	61	1	3	33	1.25
6008986--6009010	2	12.5	2	100	0	50	52	0	0	48	1.00
6010478--6010514	18	2.1	18	90	10	58	70	0	0	29	0.88
6010552--6010595	18	2.6	16	86	10	61	50	4	0	45	1.22
6011948--6011984	18	2.1	18	90	5	58	27	0	0	72	0.84
6011956--6012000	24	1.9	23	86	4	63	28	0	2	68	1.01
6019601--6019625	6	4.2	6	100	0	50	0	16	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6024244--6024282	2	19.5	2	94	0	69	46	0	0	53	1.00
6025892--6025917	2	13.0	2	100	0	52	50	0	0	50	1.00
6027574--6027613	21	1.9	21	84	0	53	7	5	7	80	1.03
6027572--6027619	21	2.3	21	74	0	51	10	8	6	75	1.20
6028721--6028772	25	2.0	25	81	7	59	69	0	13	17	1.19
6039360--6039384	13	1.9	13	100	0	50	0	12	0	88	0.53
6042083--6042108	2	13.0	2	100	0	52	50	50	0	0	1.00
6042448--6042474	2	13.5	2	100	0	54	0	48	0	51	1.00
6059071--6059125	30	2.0	28	82	13	69	16	45	9	29	1.78
6077098--6077126	12	2.5	12	94	5	51	6	17	0	75	1.01
6086009--6086090	40	2.0	40	92	0	137	41	19	13	25	1.88
6093551--6093583	2	16.5	2	100	0	66	51	0	0	48	1.00
6093854--6093895	22	1.9	22	90	0	66	33	11	9	45	1.73
6100978--6101007	15	2.0	15	100	0	60	53	6	13	26	1.64
6102109--6102139	2	15.5	2	100	0	62	48	0	0	51	1.00
6104452--6104490	16	2.4	16	91	0	60	43	2	0	53	1.14
6106898--6106957	29	2.1	29	96	0	111	3	18	0	78	0.89
6112081--6112127	24	2.0	24	83	8	60	44	4	2	48	1.34
6122729--6122756	13	2.2	13	100	0	56	71	0	0	28	0.86
6122736--6122789	21	2.5	20	74	11	54	70	1	0	27	0.98
6122724--6122792	34	2.0	34	83	16	88	68	1	0	30	0.99
6124123--6124158	17	2.1	17	89	0	54	47	2	5	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6131293--6131337	18	2.5	18	85	0	54	4	20	51	24	1.66
6133964--6133989	3	8.7	3	100	0	52	69	0	0	30	0.89
6134908--6134950	21	2.1	20	83	12	52	46	0	4	48	1.22
6134921--6134960	21	1.9	21	84	0	53	52	2	0	45	1.14
6135743--6135780	18	2.1	18	100	0	76	28	10	10	50	1.70
6137636--6137674	19	2.1	19	85	4	53	2	5	17	74	1.12
6144421--6144513	26	3.8	23	69	18	64	56	5	2	35	1.34
6146774--6146798	13	1.9	13	100	0	50	12	0	0	88	0.53
6149061--6149098	18	2.1	18	95	0	67	21	7	10	60	1.54
6152411--6152567	52	3.0	52	86	1	199	26	24	9	40	1.85
6167723--6167753	2	15.5	2	93	0	53	51	3	0	45	1.17
6168024--6168054	2	15.5	2	100	0	62	48	0	0	51	1.00
6168814--6168881	31	2.2	31	83	0	91	50	5	22	22	1.70
6169399--6169431	2	17.0	2	87	6	50	51	0	0	48	1.00
6169560--6169616	20	2.9	19	80	16	64	63	3	1	31	1.22
6176478--6176806	169	1.9	170	88	1	491	30	20	10	37	1.87
6194245--6194282	19	2.2	19	86	13	55	21	5	7	65	1.38
6198328--6198359	11	2.9	11	90	0	55	46	6	0	46	1.27
6198472--6198531	25	2.4	24	81	10	68	25	0	11	63	1.28
6200751--6200784	17	1.9	18	88	5	52	47	0	0	52	1.00
6201373--6201495	36	3.4	34	75	17	113	44	1	3	50	1.27
6201444--6201508	18	3.7	17	80	10	69	40	3	3	53	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6201829--6201876	25	2.0	25	87	4	71	45	4	2	47	1.33
6201970--6202009	20	2.0	20	85	0	53	45	7	5	42	1.54
6202032--6202091	30	2.0	30	100	0	120	40	10	10	40	1.72
6202170--6202199	7	4.3	7	100	0	60	26	0	0	73	0.84
6203364--6203457	47	2.0	47	87	0	134	35	6	26	31	1.82
6207728--6207809	5	16.6	5	85	9	91	18	0	0	81	0.69
6207731--6207808	6	13.5	6	88	11	103	16	0	0	83	0.65
6208817--6209103	58	4.9	60	86	7	355	51	3	9	36	1.50
6209019--6209102	26	3.2	26	69	16	73	53	2	8	35	1.44
6212560--6212612	8	6.4	8	81	16	63	83	1	11	3	0.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113