genome.fa.s68.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  54  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13766039--13766238	111	1.8	109	89	4	312	55	8	4	32	1.49
13766037--13766314	55	5.2	54	79	13	185	56	7	3	32	1.47
13766254--13766290	18	2.0	19	89	5	58	62	5	0	32	1.18
13766230--13766333	44	2.3	44	86	8	138	57	7	1	32	1.38
13766231--13766351	21	5.4	21	69	17	66	57	8	2	32	1.42
13766216--13766333	24	5.1	24	70	23	83	57	7	2	32	1.40
13766260--13766320	20	3.1	19	77	11	52	60	9	1	27	1.38
13766242--13766349	44	2.4	44	73	8	112	57	9	2	30	1.44
13766358--13766394	20	1.9	18	89	10	56	48	10	10	29	1.72
13771229--13771295	13	5.3	13	70	13	50	16	5	34	43	1.72
13771227--13771296	25	2.8	25	80	0	86	15	5	35	42	1.71
13774441--13774509	34	2.0	35	85	2	95	37	20	10	31	1.86
13779963--13780056	44	2.1	44	80	7	102	29	5	17	47	1.69
13780618--13780655	20	2.0	20	89	5	60	36	0	2	60	1.11
13780622--13780667	20	2.3	20	81	3	58	45	0	2	52	1.13
13781783--13781827	2	22.5	2	100	0	90	0	48	0	51	1.00
13782725--13782762	16	2.4	16	90	0	58	42	7	7	42	1.63
13784517--13784556	18	2.2	19	90	4	64	55	2	0	42	1.13
13785234--13785258	9	2.8	9	100	0	50	24	0	56	20	1.43
13788404--13788446	2	21.0	2	90	4	68	46	0	2	51	1.13
13792663--13792711	23	2.2	21	78	7	53	32	20	24	22	1.98
13794259--13794286	3	9.3	3	100	0	56	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13795071--13795117	2	23.5	2	78	8	51	44	6	0	48	1.28
13799238--13799312	22	3.5	22	76	10	66	49	8	5	37	1.55
13799302--13799400	22	4.5	22	92	1	155	44	8	13	34	1.73
13799323--13799648	22	14.8	22	71	12	123	48	6	8	36	1.59
13799597--13799648	11	4.7	11	75	0	59	53	0	5	40	1.25
13799724--13799861	65	2.1	66	81	5	156	47	7	10	34	1.65
13799953--13799981	11	2.7	11	94	5	51	75	0	0	24	0.80
13799677--13800312	22	28.9	22	66	11	133	48	6	8	36	1.59
13799980--13800061	41	2.0	41	87	0	119	52	7	4	35	1.51
13799992--13800061	19	3.5	19	81	11	86	52	7	4	35	1.48
13800613--13800728	11	10.5	11	67	7	56	50	4	6	38	1.47
13800632--13800838	44	4.6	44	75	14	165	47	6	8	37	1.60
13800609--13800862	22	11.5	21	71	12	118	49	6	7	36	1.57
13800554--13800872	22	14.4	21	69	13	72	48	5	10	36	1.60
13800928--13801069	44	3.2	44	82	7	139	48	4	8	38	1.53
13800961--13801075	22	5.2	22	81	9	126	47	3	7	40	1.49
13801043--13801099	30	1.9	30	85	0	78	43	0	10	45	1.38
13801068--13801281	22	9.7	22	73	6	128	42	6	11	39	1.67
13801174--13801251	11	7.1	11	67	16	54	43	3	12	39	1.61
13801595--13801634	22	1.9	22	90	10	66	62	2	2	32	1.22
13801682--13801750	21	3.3	22	77	16	58	47	11	10	30	1.73
13801697--13801756	21	2.9	20	82	12	68	43	11	10	35	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13805294--13805491	99	2.0	99	100	0	396	24	10	14	51	1.72
13812905--13813001	30	3.3	30	78	9	110	42	12	1	44	1.49
13813818--13813856	18	2.3	16	82	8	51	48	5	2	43	1.38
13813817--13813856	17	2.3	17	86	4	53	47	5	2	45	1.38
13816329--13816367	11	3.5	11	82	0	51	51	0	0	48	1.00
13817303--13817349	22	2.2	21	85	11	60	44	0	0	55	0.99
13819588--13819620	17	1.9	17	93	0	57	75	9	3	12	1.14
13819730--13819798	29	2.3	29	85	2	102	18	55	5	20	1.63
13819779--13819811	14	2.4	14	90	5	50	24	54	3	18	1.57
13822482--13822532	21	2.5	20	84	6	59	78	11	0	9	0.97
13833116--13833609	48	10.3	48	78	8	463	27	12	21	38	1.89
13833116--13833611	47	10.3	47	77	11	344	27	12	21	38	1.90
13833572--13833646	36	2.1	37	87	7	109	30	6	24	38	1.81
13833572--13833646	37	2.1	36	87	7	107	30	6	24	38	1.81
13833524--13833784	87	3.0	83	75	15	253	26	12	22	38	1.89
13833708--13833889	45	3.9	47	87	10	209	26	13	19	40	1.89
13833634--13833925	48	6.2	47	82	10	300	26	13	20	39	1.89
13833608--13834224	95	6.2	96	71	17	356	26	13	22	37	1.91
13833899--13833953	24	2.3	24	96	0	101	27	10	16	45	1.80
13833808--13834046	120	2.0	121	87	4	349	27	13	20	38	1.90
13833851--13834001	72	2.1	72	89	0	230	27	13	19	39	1.89
13833928--13834224	48	6.1	48	83	7	350	26	13	23	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13833928--13834224	97	3.1	97	83	3	377	26	13	23	36	1.92
13833928--13834224	145	2.0	145	84	3	384	26	13	23	36	1.92
13834386--13834482	18	5.4	18	78	12	94	77	6	2	14	1.05
13834390--13834455	25	2.7	25	88	4	91	74	4	3	18	1.12
13834423--13834472	10	5.0	10	78	11	50	78	8	0	14	0.97
13834385--13834481	43	2.2	43	83	7	115	76	7	2	14	1.09
13834440--13834494	17	3.2	17	84	0	65	78	12	1	7	1.04
13834398--13834455	11	4.9	11	80	14	62	75	5	1	17	1.06
13847474--13847524	21	2.4	21	86	0	66	33	27	9	29	1.89
13853636--13853668	14	2.4	14	94	0	57	18	9	0	72	1.10
13853974--13854078	15	6.8	14	73	16	57	36	5	2	55	1.39
13854028--13854075	3	16.0	3	91	0	78	33	4	0	62	1.14
13854968--13855067	5	19.6	5	68	22	57	17	4	4	75	1.12
13854967--13855042	6	12.7	6	73	15	52	17	1	3	77	0.99
13854966--13855074	31	3.5	31	76	14	109	17	3	3	75	1.10
13854975--13855054	36	2.2	37	80	14	96	18	3	3	73	1.13
13855624--13855723	49	2.0	49	88	3	148	41	12	10	37	1.76
13865467--13865494	10	2.8	10	100	0	56	28	17	10	42	1.83
13874767--13874858	5	19.0	5	69	14	50	40	3	4	52	1.38
13874774--13874848	14	5.0	14	72	21	55	41	2	4	52	1.34
13874875--13874932	3	19.3	3	81	0	62	29	8	0	62	1.25
13875795--13875832	15	2.6	14	88	8	58	23	2	2	71	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13877163--13877190	2	14.0	2	100	0	56	50	0	0	50	1.00
13878066--13878099	16	2.0	18	88	11	54	73	0	0	26	0.83
13878847--13878879	16	2.0	17	88	5	50	69	0	0	30	0.88
13879449--13879509	20	2.9	20	79	16	61	8	22	3	65	1.34
13885496--13885533	3	12.7	3	100	0	76	31	0	0	68	0.90
13887999--13888030	17	1.9	17	93	6	57	40	0	28	31	1.57
13889315--13889399	6	13.8	6	75	20	52	72	4	0	22	1.02
13889315--13889399	13	6.9	12	72	24	52	72	4	0	22	1.02
13889316--13889387	25	3.1	23	79	14	78	75	5	0	19	1.00
13889317--13889401	29	2.8	29	82	12	91	72	4	0	22	1.02
13889345--13889412	29	2.3	30	82	10	86	73	1	4	20	1.08
13889788--13889825	19	2.0	20	84	5	51	52	28	2	15	1.56
13890192--13890341	3	52.0	3	68	19	70	61	2	3	32	1.26
13890323--13890441	5	23.6	5	69	20	52	53	7	1	36	1.39
13890196--13890441	10	24.6	10	62	22	54	57	5	2	34	1.36
13890381--13890437	19	2.8	20	80	17	64	61	5	1	31	1.28
13890405--13890461	24	2.5	24	86	11	75	61	8	1	28	1.36
13890380--13890461	24	3.5	24	73	18	68	60	8	1	29	1.33
13890810--13891077	54	4.9	55	78	5	240	43	13	20	22	1.86
13891924--13891991	34	2.0	32	83	11	82	2	13	4	79	1.00
13891948--13891989	22	2.0	21	86	13	61	4	9	4	80	0.99
13897021--13897072	25	2.3	23	83	12	63	65	9	3	21	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13897065--13897119	22	2.6	20	86	11	74	76	3	0	20	0.94
13898075--13898189	3	41.0	3	67	13	66	60	6	2	29	1.36
13898064--13898169	19	5.4	19	75	13	81	57	7	3	31	1.44
13898081--13898174	13	6.9	14	70	12	54	58	7	3	30	1.41
13898075--13898174	32	3.0	32	76	12	87	59	7	3	31	1.39
13903976--13904086	31	3.5	31	74	11	118	48	9	2	38	1.51
13906026--13906054	10	2.9	10	100	0	58	37	0	0	62	0.96
13913021--13913430	182	2.2	182	81	3	459	36	7	12	43	1.70
13914355--13914412	20	3.0	20	82	2	64	29	8	15	46	1.75
13914583--13914625	13	3.4	13	80	6	52	23	0	2	74	0.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113