genome.fa.s68.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  74  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16569248--16569560	169	1.9	166	82	7	398	38	9	9	41	1.70
16569580--16569612	18	1.9	17	88	11	50	39	6	6	48	1.53
16569239--16569817	181	3.3	177	77	8	551	39	10	7	41	1.68
16570735--16570801	26	2.5	26	79	9	82	35	0	4	59	1.18
16571838--16571879	16	2.6	17	77	11	52	45	2	0	52	1.13
16571989--16572039	19	2.5	20	87	9	68	50	0	0	49	1.00
16572005--16572035	9	3.3	9	91	8	53	54	0	0	45	0.99
16572701--16572777	18	4.5	17	74	19	56	51	5	0	42	1.24
16572699--16572785	30	2.7	32	77	18	92	51	4	0	43	1.22
16572697--16572785	33	2.9	29	78	15	90	51	4	0	43	1.21
16572970--16573035	17	4.1	17	69	18	52	45	0	1	53	1.09
16572989--16573066	30	2.6	30	78	15	72	46	0	2	51	1.14
16573064--16573681	178	3.4	182	76	9	509	40	8	10	40	1.70
16573983--16574028	23	2.0	22	83	4	56	47	0	0	52	1.00
16574018--16574056	20	2.0	20	85	10	53	35	0	5	58	1.20
16574141--16574218	27	3.0	27	74	17	69	50	0	1	48	1.09
16574266--16574365	17	6.5	16	72	19	63	50	1	0	49	1.07
16574266--16574349	15	5.7	14	75	18	57	48	1	0	50	1.08
16576540--16576848	147	2.1	145	83	5	390	40	7	10	42	1.66
16576734--16577265	181	2.9	179	79	3	580	40	8	10	40	1.69
16577883--16579954	181	11.7	180	76	7	1612	41	9	8	40	1.67
16578207--16578514	164	1.9	164	83	1	402	41	10	7	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16578371--16579947	357	4.4	352	76	9	1074	41	9	7	41	1.66
16577879--16579954	538	3.9	529	76	8	1641	41	9	8	40	1.67
16579799--16579831	18	1.9	17	88	11	50	39	6	6	48	1.53
16579809--16580079	146	1.9	144	82	5	348	40	7	8	43	1.62
16579630--16580275	326	2.0	325	81	4	773	40	9	8	41	1.67
16580302--16580334	18	1.9	17	88	11	50	39	6	6	48	1.53
16579955--16580539	177	3.3	177	79	7	601	40	10	7	42	1.66
16580954--16580995	17	2.4	18	84	8	59	61	2	0	35	1.09
16581003--16581072	20	3.4	19	71	13	59	48	5	2	42	1.41
16581290--16581332	14	2.9	15	80	13	54	48	2	0	48	1.14
16582589--16582629	21	2.0	21	85	9	57	46	7	2	43	1.44
16582649--16582727	9	8.9	9	70	26	53	46	1	0	51	1.08
16584562--16584599	19	2.0	19	85	10	51	44	5	0	50	1.24
16584836--16584896	22	2.8	22	76	11	63	39	0	1	59	1.08
16584865--16584898	16	2.1	16	88	0	50	44	0	0	55	0.99
16584910--16584951	21	2.0	21	86	9	59	57	0	2	40	1.12
16585294--16585346	21	2.5	21	82	11	72	47	1	1	49	1.23
16585294--16585345	10	5.0	11	77	9	56	46	1	1	50	1.23
16585305--16585352	21	2.4	21	89	6	73	47	2	2	47	1.25
16585638--16585704	23	2.8	25	82	6	77	44	4	2	47	1.38
16585667--16585719	23	2.4	22	81	9	54	52	0	3	43	1.19
16585837--16585895	22	2.8	21	80	16	61	44	1	5	49	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16586032--16586078	23	2.2	22	85	11	62	59	0	0	40	0.97
16586422--16586487	31	2.3	31	82	10	77	48	0	1	50	1.10
16586754--16586807	29	1.9	29	85	7	76	40	0	1	57	1.09
16587533--16587587	22	2.5	22	85	5	67	49	3	0	47	1.19
16587530--16587604	22	3.2	22	80	14	55	45	5	2	46	1.40
16587555--16587604	22	2.3	22	86	6	66	42	6	4	48	1.46
16588298--16588354	28	2.0	28	83	6	71	42	0	3	54	1.17
16588948--16589039	36	2.6	37	78	11	97	46	2	2	48	1.26
16589469--16589510	22	2.0	21	86	13	59	50	2	0	47	1.14
16589480--16589518	15	2.5	16	88	12	55	48	5	0	46	1.24
16589552--16589599	25	1.9	25	83	8	62	47	4	2	45	1.33
16590582--16590681	6	16.2	6	71	18	64	50	2	2	46	1.24
16591052--16591115	26	2.2	30	84	13	82	45	1	3	50	1.27
16591070--16591160	21	4.3	21	74	17	66	46	1	1	51	1.15
16591124--16591180	21	2.8	20	78	17	64	52	0	1	45	1.11
16591776--16591809	17	2.0	17	88	0	50	55	2	0	41	1.15
16593629--16593672	20	2.3	19	84	4	52	52	4	0	43	1.22
16593775--16593826	15	3.4	15	78	19	54	53	0	3	42	1.19
16594346--16594379	17	2.1	17	88	5	52	29	17	5	47	1.71
16596320--16596358	16	2.4	16	82	0	51	46	2	0	51	1.14
16596345--16596369	11	2.3	11	100	0	50	44	0	0	56	0.99
16596509--16596567	23	2.6	23	79	10	59	62	3	0	33	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16596899--16596944	21	2.2	21	92	0	74	60	0	2	36	1.09
16597093--16597165	19	4.1	19	71	18	57	39	1	1	57	1.16
16597389--16597507	4	28.8	4	70	18	59	48	0	3	47	1.18
16597648--16597709	26	2.3	28	81	13	78	45	1	3	50	1.27
16597649--16597710	28	2.4	25	75	24	65	46	1	3	48	1.28
16597798--16597845	25	1.9	25	82	0	60	45	2	2	50	1.25
16598240--16598295	17	3.1	19	82	15	64	39	1	1	57	1.20
16598248--16598304	18	3.2	17	82	7	60	40	1	0	57	1.09
16599445--16599504	21	2.8	22	92	7	106	50	0	0	50	1.00
16599457--16599504	10	4.6	10	82	7	60	52	0	0	47	1.00
16599445--16599535	43	2.1	43	82	11	107	46	2	1	50	1.20
16599571--16599619	14	3.3	14	76	15	53	46	0	2	51	1.12
16599849--16599883	17	2.1	16	89	5	52	51	2	0	45	1.16
16600036--16600094	31	1.9	31	86	13	86	50	1	0	47	1.11
16600128--16600171	13	3.2	13	83	6	52	45	6	0	47	1.29
16600683--16600800	10	12.1	10	68	21	56	50	1	0	47	1.17
16600689--16600738	19	2.8	17	84	9	64	54	0	2	44	1.11
16600699--16600759	26	2.5	24	80	14	72	52	0	1	45	1.10
16600723--16600771	16	3.1	15	79	5	53	46	2	0	51	1.12
16600745--16600790	16	2.9	16	81	9	51	45	4	0	50	1.21
16600865--16600907	22	2.0	22	86	9	61	53	6	0	39	1.28
16601335--16601405	14	5.0	14	79	8	72	47	1	0	50	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16601641--16601707	23	3.1	22	82	14	70	47	1	0	50	1.10
16601935--16601971	13	2.9	13	84	15	51	48	0	0	51	1.00
16601939--16601980	15	2.7	15	89	10	59	45	0	0	54	0.99
16602239--16603235	181	5.7	169	71	13	374	40	7	10	41	1.68
16602154--16604162	180	11.2	181	78	6	1623	40	8	10	41	1.69
16602155--16604162	361	5.6	359	76	9	1446	40	8	10	41	1.69
16602155--16604146	541	3.7	530	78	9	1593	40	8	9	41	1.69
16603819--16603851	15	2.2	15	94	0	57	27	6	0	66	1.15
16604293--16604348	27	2.1	27	83	12	71	37	0	5	57	1.22
16605212--16605485	88	3.1	88	63	23	217	35	6	9	48	1.63
16604837--16605777	181	5.2	179	83	5	926	39	7	9	43	1.66
16605791--16606108	173	1.8	175	82	4	410	42	9	7	40	1.66
16605208--16606347	579	2.0	580	79	6	1252	39	7	9	42	1.67
16606454--16606486	18	1.9	17	88	11	50	48	3	6	42	1.43
16607042--16607080	12	3.2	12	85	3	51	64	2	0	33	1.08
16607536--16607580	17	2.6	17	82	6	56	35	6	0	57	1.25
16607877--16607934	16	3.6	17	75	13	52	46	0	0	53	1.00
16607952--16607985	13	2.8	12	87	12	52	52	0	2	44	1.16
16608198--16608705	177	2.8	176	79	5	468	43	10	7	38	1.68
16608868--16608905	17	2.2	17	86	9	51	47	0	2	50	1.15
16608945--16608973	11	2.6	11	100	0	58	48	0	6	44	1.29
16608959--16609023	18	3.5	17	76	14	58	47	0	3	49	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16608926--16609086	83	1.9	85	80	12	188	48	1	3	47	1.25
16609358--16609416	31	1.9	31	85	0	82	32	10	11	45	1.74
16610616--16610647	13	2.4	13	94	5	55	53	0	0	46	1.00
16610620--16610680	17	3.5	17	80	10	70	50	1	1	45	1.21
16610620--16610680	18	3.4	18	84	2	70	50	1	1	45	1.21
16610620--16610661	4	10.8	4	80	14	52	52	2	0	45	1.13
16610730--16610786	25	2.3	25	76	8	64	45	0	3	50	1.18
16611143--16611223	14	6.1	14	67	23	50	54	1	1	43	1.16
16611143--16611232	32	2.7	34	76	8	96	52	1	1	45	1.15
16611143--16611223	19	3.7	23	75	18	66	54	1	1	43	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113