genome.fa.s68.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  53  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13570349--13570426	26	3.0	26	70	17	63	56	1	2	39	1.21
13571991--13572037	21	2.2	22	81	11	53	38	2	2	57	1.23
13572741--13572773	17	1.9	17	88	11	50	48	0	0	51	1.00
13573518--13573553	5	7.2	5	93	0	63	58	2	0	38	1.13
13576910--13577058	59	2.5	58	81	4	165	18	2	21	58	1.49
13580909--13580945	19	1.9	19	100	0	74	48	0	0	51	1.00
13586803--13586867	32	2.0	33	85	8	89	56	3	3	36	1.30
13587661--13587703	18	2.4	17	81	11	50	37	4	2	55	1.33
13591623--13591690	19	3.7	18	77	13	59	55	0	1	42	1.08
13591746--13591779	17	2.0	17	88	0	50	44	2	0	52	1.16
13591742--13591822	23	3.8	20	71	15	56	46	2	1	49	1.23
13591792--13591833	17	2.6	16	88	7	59	45	2	2	50	1.27
13591865--13591949	36	2.3	35	84	10	98	44	5	1	48	1.34
13592032--13592135	39	2.6	39	77	7	104	49	0	1	48	1.19
13592069--13592143	39	1.9	39	83	5	98	48	0	2	49	1.15
13592760--13592816	28	2.0	28	86	0	78	45	10	8	35	1.70
13597446--13597488	16	2.7	15	79	10	50	69	0	2	27	1.00
13597744--13598126	193	2.0	193	95	2	698	36	12	15	36	1.85
13598577--13598628	15	3.5	15	81	0	59	84	9	1	3	0.82
13614200--13614239	17	2.4	17	87	4	55	27	10	7	55	1.60
13619590--13619617	6	4.7	6	100	0	56	14	53	14	17	1.73
13619880--13619919	21	2.0	20	85	5	53	70	5	2	22	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13625910--13625954	22	2.0	23	86	4	65	57	0	2	40	1.11
13625915--13625961	22	2.1	22	84	0	58	61	0	2	36	1.08
13625993--13626031	20	2.0	20	85	14	55	48	0	0	51	1.00
13626036--13626080	18	2.4	20	78	14	51	48	2	0	48	1.13
13632696--13632736	21	1.9	22	85	5	57	63	7	0	29	1.21
13633007--13633038	3	10.7	3	100	0	64	68	0	0	31	0.90
13633546--13633592	19	2.3	21	85	10	62	27	2	0	70	0.99
13633659--13633708	12	4.1	12	76	21	50	56	2	0	42	1.11
13634286--13634334	22	2.2	21	82	10	62	51	0	2	46	1.12
13634298--13634342	22	2.0	22	86	0	63	51	0	4	44	1.21
13634359--13634412	14	3.7	14	83	13	65	66	0	3	29	1.09
13635805--13635842	10	4.1	9	84	15	51	31	0	0	68	0.90
13640750--13640795	23	2.0	23	91	0	74	26	34	21	17	1.95
13645975--13646059	45	1.9	44	95	2	152	28	2	16	52	1.56
13646625--13646670	19	2.4	19	81	3	56	47	4	2	45	1.34
13646941--13646972	2	16.0	2	93	0	55	53	0	0	46	1.00
13647838--13648172	58	5.7	58	83	6	386	34	13	7	44	1.73
13647838--13648175	59	5.7	58	85	3	426	34	13	7	43	1.73
13647838--13648172	178	1.9	178	86	2	485	34	13	7	44	1.73
13648188--13648337	21	7.5	19	68	19	76	70	3	1	25	1.11
13648269--13648306	3	12.7	3	100	0	76	68	0	0	31	0.90
13648265--13648350	13	6.7	12	79	12	50	72	2	1	24	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13649186--13649324	36	4.0	33	73	23	106	67	1	5	25	1.19
13649212--13649265	26	2.0	27	89	3	83	68	0	7	24	1.15
13649177--13649325	13	11.2	13	64	21	53	69	1	4	24	1.16
13655879--13655933	25	2.2	25	84	9	69	3	5	7	83	0.89
13655875--13655931	30	1.9	30	89	7	89	3	5	7	84	0.87
13656278--13656672	145	2.7	145	79	2	398	41	11	14	32	1.81
13657242--13657370	33	3.9	33	87	0	186	35	25	11	27	1.91
13657421--13657518	33	3.0	33	89	0	151	29	25	18	26	1.98
13657288--13657606	154	2.1	148	83	4	397	34	20	14	30	1.92
13657781--13657919	69	2.0	69	83	5	174	37	15	11	35	1.83
13658310--13658352	1	43.0	1	80	0	50	0	6	2	90	0.52
13658316--13658352	11	3.4	11	92	7	58	0	5	2	91	0.48
13658310--13658356	19	2.5	19	93	6	78	0	8	2	89	0.57
13658495--13658529	18	1.9	18	94	0	61	48	14	14	22	1.79
13658669--13658744	38	2.0	39	94	2	136	38	10	14	36	1.81
13658711--13658762	24	2.3	22	83	9	61	32	11	15	40	1.83
13659665--13659700	18	2.0	18	100	0	72	16	16	16	50	1.79
13660100--13660188	21	4.6	18	72	22	65	3	16	1	78	0.94
13660096--13660193	6	16.2	6	67	20	53	3	17	2	77	0.99
13660700--13660745	13	3.4	14	82	14	53	6	13	0	80	0.89
13660699--13660774	7	10.9	7	74	16	59	7	9	1	81	0.93
13660697--13660774	34	2.2	33	80	13	77	8	10	1	79	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13662982--13663135	76	2.0	76	98	0	299	33	14	18	33	1.91
13663430--13663478	23	2.1	23	92	0	80	32	6	24	36	1.80
13663640--13663688	23	2.1	23	88	7	73	30	6	26	36	1.81
13663413--13663822	210	2.0	210	99	0	811	29	9	22	38	1.86
13668273--13668693	145	2.9	144	78	8	435	38	13	15	32	1.87
13672265--13672295	9	3.6	9	91	8	55	80	0	9	9	0.90
13672266--13672295	8	3.6	8	91	8	51	80	0	10	10	0.92
13673384--13673544	35	4.6	35	79	4	164	25	21	8	45	1.79
13673642--13673948	35	8.8	35	70	11	157	24	21	7	46	1.77
13673768--13673825	20	3.2	19	69	23	52	25	18	3	51	1.62
13673632--13673971	104	3.3	105	79	4	343	23	20	8	47	1.78
13673892--13674036	70	2.1	71	84	8	190	21	24	11	43	1.84
13678891--13678926	15	2.3	15	95	4	63	19	19	8	52	1.70
13685617--13685672	14	4.2	13	84	11	69	66	0	1	32	1.03
13686402--13686448	20	2.2	20	85	14	60	36	0	4	59	1.17
13690950--13691011	20	3.2	20	84	6	67	51	4	3	40	1.39
13690974--13691046	27	2.6	27	77	14	67	58	2	4	34	1.31
13693591--13693635	13	3.4	13	81	12	56	64	0	2	33	1.06
13698193--13698227	2	17.5	2	93	0	52	51	5	0	42	1.25
13708612--13708657	24	1.9	24	81	0	56	36	2	6	54	1.39
13708887--13708932	19	2.4	19	81	3	56	47	2	2	47	1.26
13713401--13713441	20	2.0	22	85	9	59	41	17	14	26	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13721755--13721787	12	2.7	12	95	4	57	51	0	0	48	1.00
13722393--13722426	15	2.3	15	90	10	52	47	8	11	32	1.71
13723143--13723289	76	1.9	76	86	2	206	31	19	14	34	1.92
13724661--13724712	22	2.4	22	76	0	59	19	7	0	73	1.07
13731219--13731247	13	2.1	14	93	6	51	62	0	24	13	1.32
13731493--13731536	23	1.9	23	85	0	61	27	22	6	43	1.78
13736498--13736540	23	2.0	22	86	9	61	39	9	2	48	1.48
13736506--13736556	23	2.3	23	83	10	61	47	9	1	41	1.48
13741390--13741465	41	1.9	39	82	10	93	59	0	0	40	0.98
13742208--13742243	17	2.1	17	100	0	72	13	22	16	47	1.82
13742607--13742635	2	14.5	2	100	0	58	51	0	0	48	1.00
13746903--13746981	19	4.0	22	66	21	57	49	8	2	39	1.48
13747548--13747805	129	2.0	129	84	0	338	35	15	11	38	1.83
13748993--13749036	12	3.5	13	81	12	56	15	2	0	81	0.78
13749032--13749099	31	2.2	30	84	10	84	41	4	5	48	1.47
13749030--13749101	33	2.3	30	79	11	81	38	4	5	51	1.45
13749568--13749618	23	2.3	22	89	3	75	68	9	3	17	1.33
13750026--13750105	6	13.0	6	84	4	61	72	3	2	21	1.12
13750020--13750061	12	3.2	13	80	10	50	83	4	2	9	0.88
13750025--13750085	25	2.4	25	86	5	77	75	3	3	18	1.08
13750054--13750099	3	15.3	3	86	0	65	67	2	2	28	1.14
13750757--13751066	119	2.6	118	82	2	397	45	16	20	17	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13762006--13762055	11	4.4	11	84	5	64	12	2	0	86	0.67
13761997--13762054	30	1.9	30	85	3	80	12	6	0	81	0.88
13762006--13762057	9	5.9	9	78	13	54	13	1	0	84	0.70
13762013--13762053	19	2.2	19	91	4	66	12	2	0	85	0.70
13762153--13762203	20	2.5	20	84	12	61	74	7	1	15	1.13
13763083--13763117	3	11.7	3	100	0	70	65	0	0	34	0.93
13766018--13766190	32	5.9	32	68	25	105	53	10	5	30	1.57
13766052--13766170	20	6.0	20	69	15	77	55	8	5	31	1.51
13766052--13766112	24	2.8	22	80	9	63	59	8	4	27	1.47
13766037--13766238	56	3.7	55	86	3	264	55	7	4	32	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113