genome.fa.s68.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  76  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16683396--16683447	23	2.5	21	84	12	63	25	7	21	46	1.77
16684341--16684386	16	2.7	17	83	12	51	76	0	15	8	1.02
16685477--16685549	21	3.4	21	80	1	83	38	9	15	36	1.80
16686011--16686237	41	5.5	42	84	4	284	24	18	14	42	1.87
16686011--16686235	81	2.8	82	84	5	287	24	18	14	42	1.87
16686469--16686536	8	7.9	8	88	8	64	23	0	0	76	0.79
16686479--16686542	3	21.7	3	81	15	80	26	0	0	73	0.84
16686471--16686543	28	2.6	29	80	12	98	24	0	0	75	0.81
16686463--16686547	33	2.5	33	87	7	127	23	0	0	76	0.79
16688603--16688831	124	1.8	124	85	3	318	37	12	6	43	1.70
16689072--16689749	181	3.8	181	76	6	497	42	10	8	39	1.68
16689503--16689911	179	2.3	180	81	3	473	42	7	8	40	1.65
16689794--16690095	155	1.9	157	80	7	353	39	6	9	43	1.64
16690109--16690623	182	2.9	182	80	5	492	40	9	6	42	1.65
16689981--16690814	181	4.6	180	76	9	513	41	8	8	41	1.66
16690883--16701048	181	56.3	181	73	8	5565	40	7	9	42	1.67
16693939--16694698	177	4.2	182	75	6	427	42	8	8	41	1.65
16694849--16695269	231	1.8	231	82	2	540	38	5	9	45	1.62
16696840--16697448	179	3.4	178	75	7	435	41	7	8	42	1.64
16697316--16697353	16	2.4	17	86	8	53	57	7	5	28	1.49
16695055--16718011	181	127.4	179	72	10	9938	40	8	10	41	1.68
16697810--16697856	18	2.4	19	79	13	51	48	6	12	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16697236--16701049	180	21.2	178	74	10	982	39	7	10	42	1.67
16695053--16718017	360	63.7	361	70	11	8803	40	8	10	41	1.68
16700933--16700965	18	1.9	17	88	11	50	48	6	6	39	1.53
16702048--16702090	16	2.6	16	81	3	50	30	2	2	65	1.18
16702712--16702744	18	1.9	17	88	11	50	48	6	6	39	1.53
16704415--16704720	151	2.0	151	83	3	384	41	7	11	39	1.69
16704661--16705040	182	2.1	179	78	8	396	39	8	9	42	1.68
16706877--16707174	162	1.8	161	85	3	420	42	8	8	40	1.65
16709581--16713518	733	5.4	717	74	9	1960	40	8	10	41	1.70
16705245--16715592	533	19.2	538	74	9	4523	40	8	10	41	1.69
16715470--16715508	21	1.9	19	85	10	51	41	12	7	38	1.72
16715761--16716029	139	1.9	140	83	6	348	40	7	9	42	1.66
16715924--16718015	363	5.8	359	75	9	1492	40	7	9	42	1.67
16716328--16718015	182	9.4	180	77	6	1360	40	7	9	42	1.65
16717808--16718229	218	1.9	217	80	7	491	40	6	9	43	1.63
16718169--16718499	181	1.8	180	84	3	450	40	8	9	41	1.68
16718528--16719438	177	5.0	177	77	7	747	41	9	8	40	1.68
16719086--16719119	16	2.1	16	88	0	50	76	0	2	20	0.92
16718528--16719430	363	2.5	358	78	6	890	41	9	8	40	1.69
16719713--16721221	181	8.3	176	71	11	631	40	8	9	40	1.69
16720316--16720359	19	2.2	20	88	12	72	40	4	18	36	1.71
16720322--16720368	19	2.5	19	93	6	78	48	6	12	31	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16720794--16721202	177	2.3	179	78	6	407	43	9	8	39	1.66
16726325--16726374	18	2.8	18	71	17	50	56	0	0	44	0.99
16726484--16726541	27	2.2	26	84	9	73	55	0	3	41	1.17
16726666--16726735	20	3.5	21	79	11	67	41	0	1	57	1.08
16726691--16726752	20	3.0	20	80	7	61	41	0	0	58	0.98
16727006--16727081	40	1.9	38	89	7	116	47	2	5	44	1.39
16727490--16728173	181	3.8	178	78	8	569	40	8	9	41	1.67
16728157--16728205	21	2.3	22	83	13	59	38	0	6	55	1.25
16728846--16728898	28	2.0	27	82	14	65	41	3	7	47	1.50
16729741--16729807	13	4.8	14	75	10	57	38	0	0	61	0.96
16729864--16729926	34	1.9	32	84	12	83	47	1	0	50	1.10
16729975--16730020	21	2.1	22	84	4	58	58	2	2	36	1.22
16730533--16730608	17	4.3	18	75	17	79	53	2	1	42	1.23
16730533--16730608	9	8.7	9	70	11	50	53	2	1	42	1.23
16730871--16730930	24	2.5	24	81	7	68	45	5	3	46	1.41
16730913--16730952	18	2.2	19	86	4	55	45	0	0	55	0.99
16731294--16731358	18	3.4	18	78	12	76	43	9	7	40	1.65
16731408--16731447	19	2.0	20	95	4	73	52	0	5	42	1.23
16731490--16731539	19	3.0	16	78	18	57	52	2	0	46	1.12
16731655--16731690	13	2.8	14	80	20	51	52	0	0	47	1.00
16731654--16731698	20	2.2	20	84	7	56	53	0	2	44	1.13
16731684--16731745	27	2.2	28	86	8	83	46	3	4	45	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16732041--16732125	29	2.9	29	75	18	84	52	2	0	44	1.13
16732274--16732305	14	2.4	14	94	5	57	50	0	0	50	1.00
16732529--16732563	17	2.1	17	89	10	54	54	0	2	42	1.15
16732538--16732583	13	3.4	14	80	11	51	43	0	0	56	0.99
16732545--16732594	25	2.0	25	84	7	66	38	0	0	62	0.96
16732563--16732587	9	2.8	9	100	0	50	32	0	0	68	0.90
16732960--16732996	18	2.0	19	89	5	58	45	5	10	37	1.62
16732918--16733417	180	3.0	163	76	9	419	41	8	9	41	1.67
16732918--16733237	163	2.0	164	83	1	410	40	7	10	42	1.67
16733079--16733476	180	2.2	180	82	4	464	42	7	10	39	1.67
16734952--16734989	11	3.7	11	83	16	55	55	0	0	44	0.99
16735501--16735533	18	1.9	17	88	11	50	39	6	6	48	1.53
16736260--16736316	10	5.9	10	77	8	64	50	1	0	47	1.11
16736442--16736517	10	8.0	9	72	15	55	50	1	2	46	1.24
16736442--16736524	19	4.6	18	71	14	55	49	1	2	46	1.22
16736697--16736764	22	3.2	21	73	10	66	47	0	1	51	1.09
16737042--16737180	46	3.1	45	62	24	103	49	12	5	32	1.64
16737004--16737180	89	2.0	89	98	0	345	51	10	5	32	1.57
16737214--16737240	14	1.9	14	100	0	54	29	14	11	44	1.80
16737504--16737565	19	3.1	19	84	11	79	45	6	0	48	1.28
16737726--16737813	6	14.0	6	72	14	54	52	1	0	46	1.08
16737726--16737871	20	7.5	19	68	19	86	50	2	0	47	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16737726--16737794	22	2.8	24	82	12	79	50	1	0	47	1.09
16737754--16737791	11	3.5	11	79	13	51	55	0	0	44	0.99
16737841--16737884	20	2.2	21	80	15	58	43	4	2	50	1.35
16738439--16738505	19	3.4	19	77	6	62	41	1	0	56	1.08
16738683--16738718	18	2.1	17	89	5	54	47	0	5	47	1.25
16738693--16738780	47	1.9	47	82	13	112	44	0	1	54	1.07
16739372--16739410	19	2.1	19	85	0	51	41	10	7	41	1.68
16739667--16739738	38	1.9	36	83	5	90	50	1	0	48	1.09
16740030--16740058	10	2.9	10	100	0	58	51	0	6	41	1.28
16740982--16741026	22	2.1	21	87	4	63	42	2	2	53	1.25
16741229--16741290	27	2.3	28	86	10	85	43	1	3	51	1.27
16741362--16741414	18	3.0	18	75	10	56	49	1	0	49	1.12
16741369--16741443	20	4.2	17	75	18	64	52	1	1	45	1.17
16741385--16741437	20	2.7	21	82	8	67	52	1	1	43	1.23
16742242--16742286	21	2.1	22	83	4	56	35	2	2	60	1.22
16742367--16742403	13	2.7	15	84	16	53	43	0	5	51	1.24
16742369--16742403	14	2.6	13	86	8	52	42	0	5	51	1.25
16742466--16742525	25	2.4	25	86	5	77	55	0	0	45	0.99
16742811--16742845	13	2.8	12	87	8	52	48	8	0	42	1.33
16744508--16744657	9	16.4	9	65	24	57	47	2	0	50	1.15
16744484--16744568	31	2.8	30	81	16	88	40	2	1	56	1.20
16744508--16744579	31	2.3	31	79	11	76	44	2	0	52	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16745756--16745805	12	4.8	11	81	15	54	50	4	0	46	1.20
16745751--16745860	12	10.1	11	72	16	52	48	3	2	45	1.34
16745906--16745945	13	3.3	13	73	20	50	60	0	0	40	0.97
16747165--16747229	25	2.5	24	78	11	67	46	1	1	50	1.20
16747191--16747243	19	2.8	19	86	8	65	45	1	0	52	1.11
16747330--16747358	14	2.0	15	93	6	51	27	0	3	68	1.05
16747533--16747586	25	2.2	25	87	12	76	55	0	0	44	0.99
16747553--16747597	16	2.9	16	90	3	65	55	0	0	44	0.99
16747732--16747809	25	3.1	25	74	20	72	48	1	1	48	1.17
16747770--16747854	25	3.4	24	78	12	91	52	1	0	45	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113