genome.fa.s68.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  41  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11714173--11714312	71	2.0	71	83	5	176	34	12	10	42	1.77
11714240--11714282	18	2.4	18	88	0	59	39	13	4	41	1.66
11714238--11714312	18	4.2	17	71	17	55	36	10	10	42	1.74
11714216--11714406	71	2.7	71	76	10	174	29	10	14	46	1.77
11715704--11715744	21	2.0	21	90	0	64	26	9	24	39	1.86
11718015--11718043	3	9.7	3	100	0	58	65	0	0	34	0.93
11720978--11721039	29	2.1	29	82	5	72	43	4	3	48	1.40
11725488--11725539	24	2.2	23	86	6	77	61	11	0	26	1.30
11725529--11725608	23	3.5	22	71	18	81	58	10	5	26	1.51
11725660--11725742	10	7.7	10	78	15	60	78	3	2	15	1.00
11725677--11725730	28	1.9	28	85	7	74	77	3	1	16	1.00
11725676--11725741	18	3.9	16	76	21	64	80	3	1	15	0.91
11725687--11725742	28	2.0	29	82	10	71	80	3	0	16	0.85
11732044--11732069	2	13.0	2	100	0	52	50	0	0	50	1.00
11733120--11733181	29	2.2	28	80	8	72	50	3	3	43	1.34
11733154--11733193	15	2.6	16	80	8	55	47	0	5	47	1.24
11733252--11733289	18	2.1	19	85	5	51	31	7	0	60	1.25
11736059--11736099	3	13.7	3	100	0	82	34	0	0	65	0.93
11738364--11738409	21	2.2	21	84	0	56	39	23	8	28	1.84
11738370--11738410	21	2.0	21	90	0	64	39	24	9	26	1.86
11739675--11739732	28	2.1	28	86	0	80	50	12	10	27	1.72
11739705--11739815	17	6.3	17	72	14	73	45	18	9	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11739705--11739873	18	9.5	18	71	10	71	45	14	10	29	1.78
11739800--11739988	54	3.5	53	75	9	152	42	10	13	33	1.78
11739826--11739958	18	7.5	18	70	11	53	41	9	14	35	1.77
11740294--11740349	24	2.5	21	77	8	58	42	10	5	41	1.62
11740436--11740540	22	4.8	21	75	19	90	44	15	7	32	1.74
11740482--11740551	21	3.2	22	88	11	108	44	11	10	34	1.74
11740371--11740554	44	4.2	43	73	14	133	44	11	8	35	1.72
11741733--11741771	15	2.6	15	87	0	60	28	20	7	43	1.79
11745501--11745531	16	1.9	16	100	0	62	12	0	38	48	1.42
11745611--11746024	200	2.1	199	82	5	498	27	16	15	40	1.89
11749249--11749327	20	4.0	20	96	0	140	18	30	29	21	1.97
11751606--11751677	17	4.2	16	76	22	67	15	1	2	80	0.89
11751617--11751670	28	1.9	28	85	7	74	16	1	3	77	1.00
11751743--11751822	23	3.5	22	71	18	81	26	5	10	58	1.51
11751745--11751829	25	3.5	24	74	18	86	25	4	9	60	1.48
11751793--11751863	24	3.1	23	80	13	76	25	2	9	61	1.40
11751894--11751927	11	2.8	12	91	8	52	32	5	8	52	1.56
11753410--11753461	25	2.0	26	82	10	63	13	1	11	73	1.19
11754755--11755257	201	2.5	201	81	7	542	42	14	15	27	1.86
11758762--11758813	24	2.2	24	82	6	61	78	3	5	11	1.05
11758998--11759036	15	2.6	15	87	0	60	43	7	20	28	1.79
11760222--11760333	21	5.1	22	73	11	104	33	12	14	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11760398--11760445	22	2.1	23	85	11	64	39	8	4	47	1.53
11760443--11760475	14	2.4	14	94	0	57	27	0	18	54	1.44
11760469--11760524	24	2.5	22	76	5	58	42	5	7	44	1.54
11760806--11760849	21	2.2	19	84	12	52	36	2	6	54	1.40
11760858--11760971	18	6.4	18	73	6	79	33	14	12	40	1.83
11760901--11761003	54	1.9	53	82	5	127	33	12	13	39	1.83
11760990--11761041	17	2.9	18	82	5	70	30	3	15	50	1.62
11760932--11761103	89	1.9	89	80	4	195	31	10	11	45	1.74
11761047--11761105	17	3.4	17	85	4	82	32	15	6	45	1.72
11761077--11761137	28	2.2	28	84	0	86	27	11	13	47	1.77
11760995--11761189	18	11.3	18	71	19	78	29	9	11	49	1.71
11761065--11761167	46	2.3	45	91	3	163	28	11	10	49	1.72
11762206--11762279	13	5.9	14	71	24	58	24	5	12	58	1.55
11762197--11762314	49	2.4	50	82	10	138	26	5	11	56	1.56
11762195--11762314	24	5.0	24	77	13	124	25	5	10	57	1.55
11762450--11762492	21	2.0	21	95	0	77	30	9	18	41	1.82
11763895--11763928	15	2.2	16	94	5	61	35	0	0	64	0.94
11767170--11767420	42	6.0	42	81	1	254	25	8	13	52	1.68
11767166--11767403	84	2.8	83	84	5	291	24	8	13	53	1.68
11767179--11767435	126	2.0	126	82	3	311	24	8	14	52	1.69
11767170--11767435	84	3.2	82	82	3	284	24	8	14	53	1.68
11768108--11768185	32	2.4	32	85	4	104	58	8	6	25	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11772907--11772957	23	2.2	23	92	0	84	66	17	5	9	1.40
11774056--11774089	17	2.0	17	100	0	68	47	17	11	23	1.81
11780194--11780262	34	2.0	34	94	0	120	15	15	15	52	1.76
11781456--11781561	53	2.0	54	86	1	151	43	1	11	43	1.51
11783520--11783593	30	2.5	30	84	6	89	36	2	6	54	1.41
11783870--11783947	31	2.5	31	83	6	106	39	0	12	47	1.42
11787893--11787917	5	5.0	5	100	0	50	40	0	0	60	0.97
11787906--11787946	19	2.1	20	90	4	66	41	0	0	58	0.98
11787890--11787953	31	2.1	31	83	11	80	46	0	0	53	1.00
11787888--11787956	30	2.2	32	78	17	83	47	0	0	52	1.00
11787919--11788024	56	1.9	55	88	1	158	54	0	0	44	1.06
11792304--11792337	1	34.0	1	100	0	68	100	0	0	0	0.00
11796645--11796764	49	2.4	49	80	5	136	39	19	11	30	1.87
11796911--11797351	204	2.2	204	85	2	591	43	20	13	22	1.86
11796911--11797350	99	4.3	104	81	9	476	43	20	13	22	1.87
11797366--11797735	75	4.9	75	89	0	551	40	19	11	28	1.87
11797558--11797683	33	3.5	33	68	17	99	41	21	11	26	1.86
11797918--11797999	35	2.2	37	85	6	114	37	10	17	34	1.85
11797940--11798046	46	2.3	46	88	1	151	43	10	14	31	1.78
11798251--11798291	21	1.9	22	85	5	57	17	19	7	56	1.64
11803365--11803402	10	4.0	10	83	13	53	52	0	0	47	1.00
11804274--11804331	15	3.9	15	80	10	59	29	0	5	65	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11804468--11804496	15	2.0	15	93	6	51	24	27	27	20	1.99
11817117--11817159	18	2.5	16	82	14	50	58	6	9	25	1.54
11817125--11817238	51	2.2	51	96	0	210	54	7	7	30	1.56
11818008--11818041	10	3.4	10	87	0	50	61	0	23	14	1.33
11820382--11820420	18	2.2	18	86	9	53	53	0	2	43	1.14
11820415--11820474	29	2.1	29	90	0	93	46	5	0	48	1.24
11820752--11820785	13	2.7	13	86	4	52	44	2	0	52	1.16
11827398--11827604	103	2.0	103	97	0	387	29	9	17	42	1.80
11828558--11828761	78	2.7	75	82	7	218	46	4	9	39	1.56
11829702--11829746	20	2.2	21	88	4	65	8	22	11	57	1.60
11834777--11834806	2	15.0	2	100	0	60	50	0	0	50	1.00
11836508--11836796	57	4.9	56	88	7	416	34	10	7	46	1.67
11836508--11836796	117	2.5	114	91	5	445	34	10	7	46	1.67
11836814--11836959	12	11.2	12	68	21	57	73	4	4	17	1.14
11836804--11836873	26	2.6	27	81	16	83	78	1	5	14	1.00
11836818--11836959	17	8.4	17	70	16	73	73	4	4	17	1.15
11836800--11836899	17	6.1	16	72	18	55	75	1	7	17	1.08
11836814--11836959	18	8.5	17	70	17	63	73	4	4	17	1.14
11837811--11837866	23	2.5	22	82	8	67	64	1	7	26	1.29
11837877--11837924	9	5.9	8	85	11	62	81	2	0	16	0.79
11837873--11837921	23	2.1	22	85	14	64	81	2	0	16	0.78
11837871--11837922	17	2.9	18	86	11	72	80	1	0	17	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11838143--11838190	10	4.7	10	80	12	53	2	0	12	85	0.69
11838143--11838173	15	2.1	15	93	0	53	0	0	16	83	0.64
11838143--11838190	15	3.1	14	78	21	51	2	0	12	85	0.69
11838197--11838497	42	7.1	42	91	3	457	36	22	16	24	1.94
11838197--11838495	85	3.5	84	90	4	469	36	22	16	24	1.94
11838658--11839166	251	2.0	251	97	0	966	26	19	16	37	1.92
11839923--11839975	8	6.4	8	78	8	61	3	13	0	83	0.79
11839922--11840014	22	4.2	21	76	17	91	6	17	0	76	0.99
11839927--11839985	11	5.4	10	80	15	64	3	13	0	83	0.78
11839927--11840007	35	2.4	34	81	6	83	4	16	0	79	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113