genome.fa.s68.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  107  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20966948--20966992	21	2.2	20	92	7	74	53	0	0	46	1.00
20966984--20967020	14	2.7	14	84	16	51	64	0	0	35	0.94
20969380--20969422	14	2.9	15	86	10	61	65	4	0	30	1.13
20972471--20972548	30	2.6	30	85	4	95	57	0	5	37	1.21
20973798--20973833	1	36.0	1	100	0	72	100	0	0	0	0.00
20975688--20975753	20	3.4	19	72	13	55	45	0	1	53	1.09
20979773--20979804	15	2.1	16	94	5	57	56	0	3	40	1.15
20982323--20982372	22	2.3	23	83	13	70	26	26	16	32	1.96
20991906--20991957	25	2.1	25	92	0	86	51	0	26	21	1.47
21005616--21005664	25	2.0	23	85	14	64	36	4	4	55	1.38
21005694--21005798	30	3.5	29	79	10	113	40	0	17	41	1.55
21007269--21007310	21	2.0	21	90	4	68	38	0	2	59	1.10
21008464--21008509	18	2.5	19	75	17	51	43	0	0	56	0.99
21013768--21013804	2	18.5	2	100	0	74	51	0	0	48	1.00
21019550--21019587	16	2.4	16	82	8	51	34	0	0	65	0.93
21019542--21019587	24	1.9	24	95	0	83	34	0	0	65	0.93
21019543--21019584	12	3.5	12	78	12	50	35	0	0	64	0.94
21030523--21030558	17	2.1	18	94	5	65	58	8	0	33	1.28
21030722--21030767	21	2.3	19	85	7	56	52	0	0	47	1.00
21031201--21031258	20	3.0	20	75	9	59	18	1	6	72	1.16
21031387--21031428	22	1.9	22	90	9	68	33	0	2	64	1.07
21031575--21031616	20	2.2	20	91	4	68	23	4	0	71	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21031752--21031792	18	2.3	19	80	20	52	24	4	7	63	1.40
21031820--21031860	3	14.7	3	80	14	52	68	2	0	29	1.03
21031824--21031897	22	3.5	20	80	14	78	72	4	1	21	1.08
21031832--21031913	41	2.0	42	81	11	98	73	7	1	18	1.13
21031832--21031910	19	3.6	22	76	13	74	73	7	1	17	1.13
21032885--21032916	3	10.7	3	93	0	55	62	0	3	34	1.11
21033140--21033496	40	9.1	40	79	6	286	41	17	14	26	1.88
21033167--21033456	120	2.4	119	84	5	377	41	17	13	27	1.87
21048420--21048449	15	1.9	16	93	6	53	66	0	0	33	0.92
21048893--21048942	14	3.6	14	71	15	50	58	0	2	40	1.10
21049110--21049143	14	2.5	13	86	13	50	32	0	0	67	0.91
21049377--21049415	15	2.8	15	88	11	57	38	0	5	56	1.22
21054922--21054963	21	2.0	22	85	4	59	23	0	16	59	1.37
21057365--21057399	18	1.9	18	94	0	61	71	0	0	28	0.86
21058764--21058814	23	2.3	22	77	12	59	49	0	0	50	1.00
21058746--21058802	26	2.3	25	81	6	71	40	0	0	59	0.97
21059035--21059077	22	2.0	22	86	9	61	58	0	6	34	1.25
21072882--21073510	330	1.9	330	89	0	972	28	20	14	35	1.92
21080578--21080602	11	2.3	11	100	0	50	40	0	0	60	0.97
21085708--21085733	12	2.2	12	100	0	52	19	23	7	50	1.73
21093946--21093970	1	25.0	1	100	0	50	0	0	0	100	0.00
21094025--21094084	21	2.8	22	78	16	63	38	3	3	55	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21094353--21094403	18	3.0	17	83	8	68	33	1	1	62	1.17
21094358--21094396	6	6.5	6	87	0	60	30	2	2	64	1.21
21094362--21094408	24	2.1	23	88	11	71	27	2	4	65	1.22
21094967--21095025	29	2.0	30	86	3	84	42	5	1	50	1.34
21095060--21095084	13	1.9	13	100	0	50	92	0	0	8	0.40
21097938--21097973	14	2.6	14	91	4	56	63	0	0	36	0.94
21097934--21097997	20	3.2	21	81	16	66	62	0	0	37	0.95
21097966--21097999	12	2.9	12	91	4	52	61	0	0	38	0.96
21100926--21100974	15	3.2	16	85	8	66	63	0	2	34	1.06
21101594--21101643	26	2.0	26	84	11	68	40	0	14	46	1.44
21102068--21102166	2	51.5	2	71	11	64	51	1	0	47	1.07
21102035--21102169	32	4.3	31	76	18	102	55	0	0	43	1.05
21102038--21102122	31	2.9	29	78	14	95	55	1	0	43	1.07
21103385--21103428	2	22.5	2	90	4	72	47	2	0	50	1.13
21106020--21106230	104	2.0	104	91	1	343	27	12	14	45	1.81
21107051--21107098	21	2.3	20	86	13	62	12	8	10	68	1.39
21114295--21114339	21	2.1	22	83	4	56	33	17	4	44	1.69
21117022--21117077	7	8.3	7	74	5	53	53	10	14	21	1.70
21118916--21118964	22	2.2	22	100	0	98	24	14	10	51	1.73
21122912--21122963	25	2.0	26	81	3	61	53	3	15	26	1.59
21129628--21129658	11	2.7	11	95	5	53	32	3	0	64	1.09
21131194--21131239	19	2.4	19	81	0	65	17	4	2	76	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21131220--21131247	14	2.0	14	100	0	56	21	7	0	71	1.09
21131441--21132104	49	13.8	48	85	5	792	36	22	13	26	1.92
21131440--21132108	97	6.9	97	85	5	790	36	22	13	26	1.92
21143125--21143195	19	3.7	19	79	5	90	78	0	19	1	0.82
21147221--21147254	6	5.7	6	92	0	59	14	70	0	14	1.17
21153508--21153537	2	15.0	2	100	0	60	50	0	0	50	1.00
21154432--21154464	13	2.7	13	90	9	52	63	0	0	36	0.95
21158414--21158444	16	1.9	16	93	0	53	54	3	0	41	1.16
21159101--21159158	25	2.3	23	78	16	62	32	0	8	58	1.28
21160425--21160483	24	2.4	26	83	11	79	45	0	1	52	1.10
21160444--21160532	25	3.5	25	75	13	83	49	1	0	49	1.08
21160498--21160541	20	2.3	19	84	4	61	52	0	0	47	1.00
21163048--21163082	18	1.9	18	100	0	70	34	8	40	17	1.80
21164744--21164777	3	11.3	3	93	0	59	32	0	2	64	1.08
21166072--21166202	58	2.3	58	89	6	196	52	6	6	33	1.55
21169179--21169226	25	2.0	25	84	8	64	31	0	4	64	1.12
21169752--21169813	28	2.2	28	85	5	81	19	9	16	54	1.68
21170377--21170451	31	2.4	31	86	8	107	68	2	2	26	1.17
21171075--21171112	3	12.7	3	100	0	76	31	0	0	68	0.90
21171716--21171744	11	2.5	12	94	5	51	41	0	0	58	0.98
21171884--21171918	16	2.1	17	89	5	54	60	0	2	37	1.12
21174587--21174642	25	2.3	24	77	14	62	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21177209--21177252	24	1.9	24	82	17	58	56	18	4	20	1.58
21178073--21178098	4	6.5	4	100	0	52	0	0	26	73	0.84
21178330--21178383	22	2.4	23	75	15	58	61	1	7	29	1.34
21179068--21179144	31	2.4	30	81	16	84	19	2	6	71	1.20
21179521--21179586	31	2.1	31	83	5	80	30	22	21	25	1.99
21180020--21180066	13	3.6	13	85	5	60	12	2	6	78	1.02
21180148--21180897	57	12.7	57	87	9	1017	45	8	13	33	1.72
21180146--21180897	116	6.4	114	90	6	1021	45	7	13	33	1.72
21180148--21180897	173	4.2	176	89	6	1060	45	8	13	33	1.72
21180566--21180654	27	3.2	27	62	20	65	41	6	14	37	1.72
21181810--21181871	18	3.4	18	71	24	58	30	1	11	56	1.44
21181861--21181919	3	19.7	3	74	19	52	32	1	5	61	1.28
21182696--21182740	22	2.0	22	91	0	72	33	6	0	60	1.23
21182908--21182981	13	5.7	13	72	4	51	35	2	0	62	1.10
21184069--21184118	3	16.7	3	100	0	100	34	0	0	66	0.92
21184922--21184951	5	5.8	5	92	7	51	16	0	0	83	0.65
21187852--21187924	28	2.6	27	80	10	67	75	9	9	5	1.19
21188990--21189048	28	2.2	26	82	8	66	72	5	0	22	1.03
21190655--21190684	15	2.0	15	93	0	51	63	6	0	30	1.20
21195018--21195098	40	2.0	41	95	2	146	40	25	9	23	1.85
21200501--21200540	18	2.2	18	90	0	62	77	0	7	15	0.98
21201352--21202057	48	14.6	49	85	5	850	29	11	21	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21201359--21202057	95	7.2	95	85	5	829	28	12	21	37	1.89
21202237--21202279	22	2.0	22	85	0	59	25	18	27	27	1.98
21202270--21202332	28	2.2	28	88	0	99	26	19	14	39	1.90
21202456--21202480	13	1.9	13	100	0	50	80	20	0	0	0.72
21202450--21202523	28	2.6	27	83	12	87	77	13	8	1	1.06
21202451--21202523	14	5.2	13	72	18	58	76	13	8	1	1.07
21206132--21206181	18	2.6	19	84	9	66	72	4	18	6	1.22
21207090--21207136	17	2.6	19	77	16	55	34	14	14	36	1.88
21207062--21207312	86	2.9	87	85	2	328	31	15	14	38	1.88
21207062--21207342	86	3.3	86	82	7	302	31	16	14	38	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113