genome.fa.s68.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  78  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16788467--16788515	19	2.5	20	81	18	59	53	0	0	46	1.00
16788475--16788512	12	3.2	12	88	7	51	52	0	0	47	1.00
16788871--16788935	26	2.6	24	79	16	62	46	6	0	47	1.27
16788972--16789006	16	2.2	16	90	10	54	48	0	2	48	1.16
16789752--16789784	17	1.9	17	88	11	50	60	0	0	39	0.97
16790744--16790804	23	2.7	22	78	9	61	54	4	1	39	1.32
16791640--16792297	181	3.7	178	77	4	579	41	8	7	42	1.64
16792590--16792935	178	2.0	172	81	6	408	42	9	7	40	1.66
16793121--16793179	25	2.3	26	82	11	77	54	0	3	42	1.17
16793142--16793210	22	3.2	22	84	8	79	50	0	2	46	1.16
16793280--16793328	22	2.1	24	85	14	68	48	6	2	42	1.39
16793525--16794417	180	5.0	181	75	9	640	40	8	9	42	1.67
16793718--16794348	345	1.8	345	81	7	778	40	7	10	41	1.68
16794059--16794386	176	1.9	173	80	7	367	41	6	10	41	1.66
16794696--16795286	183	3.3	182	80	6	632	39	7	8	44	1.64
16795458--16795492	17	2.0	18	88	5	54	40	0	8	51	1.33
16795695--16795786	21	4.4	21	69	14	64	40	0	2	57	1.11
16795749--16795804	17	3.4	17	77	20	64	46	1	1	50	1.22
16796231--16796268	18	2.1	19	85	5	51	39	2	10	47	1.52
16796338--16796376	12	3.3	12	85	3	53	48	2	0	48	1.15
16796383--16796448	21	3.1	20	86	8	78	50	0	4	45	1.22
16797328--16797565	120	2.0	120	85	4	329	34	13	8	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16797164--16797717	301	1.8	301	80	3	675	38	11	8	41	1.72
16797464--16797990	180	2.9	178	77	9	482	42	7	8	41	1.64
16798866--16798896	16	1.9	16	100	0	62	58	6	6	29	1.48
16799192--16799237	23	2.0	22	84	16	58	56	8	0	34	1.30
16799480--16799527	18	2.8	17	84	9	53	45	4	10	39	1.58
16799419--16800952	176	8.6	177	74	10	1017	40	8	9	41	1.68
16799419--16803700	181	24.0	173	71	13	1703	40	8	9	41	1.68
16799429--16803690	542	8.0	526	73	10	1748	40	8	9	41	1.68
16800976--16801019	19	2.3	20	84	11	65	50	0	2	47	1.13
16800989--16801022	13	2.7	13	90	4	52	50	0	0	50	1.00
16801011--16801050	21	1.9	21	89	0	62	50	5	0	45	1.23
16801209--16803704	181	13.9	180	76	7	1910	40	8	9	40	1.70
16801439--16803704	361	6.3	361	76	7	1823	40	8	9	40	1.70
16801431--16803690	724	3.1	712	79	5	2136	40	8	9	40	1.70
16806107--16806167	26	2.3	26	91	5	97	44	0	3	52	1.17
16806270--16806313	19	2.2	20	88	4	63	52	4	2	40	1.34
16806371--16806412	22	1.9	22	85	0	57	54	0	2	42	1.13
16806532--16806588	18	3.2	18	76	18	66	52	3	3	40	1.35
16806532--16806596	35	1.9	34	85	14	91	52	3	4	40	1.38
16808237--16808312	24	3.3	23	73	10	66	48	1	0	50	1.09
16808238--16808319	20	4.0	22	64	22	52	48	1	0	50	1.08
16809159--16809206	21	2.5	19	87	12	64	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16809613--16809675	24	2.6	24	82	5	74	42	0	4	52	1.22
16809903--16809978	30	2.6	28	75	17	66	44	5	2	47	1.39
16810162--16810206	22	2.0	22	86	0	63	46	2	2	48	1.26
16810161--16810226	28	2.5	25	75	17	71	48	3	1	46	1.26
16810773--16810819	24	2.0	24	83	4	60	48	4	2	44	1.34
16810782--16810880	12	8.7	12	68	14	66	51	2	0	46	1.12
16811512--16811550	5	8.0	5	83	16	55	56	0	0	43	0.99
16812175--16812212	17	2.2	17	86	9	51	42	0	2	55	1.14
16814713--16814758	18	2.6	18	82	0	56	45	2	2	50	1.26
16815184--16815237	23	2.3	23	75	6	56	50	1	0	48	1.11
16815216--16815257	10	4.3	10	78	6	50	52	0	0	47	1.00
16815217--16815275	19	3.1	19	75	7	57	54	0	1	44	1.10
16815224--16815276	26	2.0	26	82	7	63	54	0	1	43	1.11
16815655--16815689	10	3.4	10	88	7	52	54	0	0	45	0.99
16815654--16815692	14	2.9	14	92	3	62	56	0	0	43	0.99
16815948--16815990	15	2.8	16	86	6	54	44	0	0	55	0.99
16815946--16816001	13	4.1	13	78	17	51	48	0	0	51	1.00
16815959--16816002	22	2.0	21	82	4	52	50	0	0	50	1.00
16816285--16816346	25	2.6	24	76	16	65	59	4	0	35	1.19
16816759--16816815	21	2.8	20	82	10	71	54	1	0	43	1.10
16816753--16816822	21	3.4	21	71	21	58	55	1	0	42	1.08
16816838--16816870	13	2.4	14	90	10	50	51	0	6	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16817351--16817386	18	1.9	19	88	5	56	38	2	2	55	1.29
16817503--16817537	18	1.9	18	94	0	61	45	0	0	54	0.99
16817818--16817850	17	1.9	17	88	11	50	39	0	0	60	0.97
16818120--16818169	25	2.0	25	84	7	66	40	2	4	54	1.31
16818651--16818711	26	2.3	27	82	5	70	50	0	4	44	1.23
16818748--16818796	22	2.3	21	82	3	62	48	2	0	48	1.12
16818861--16818903	22	2.0	22	86	9	61	39	0	6	53	1.28
16819042--16819128	38	2.4	37	83	13	108	51	1	1	45	1.16
16819405--16819480	38	2.1	36	87	9	109	51	1	0	47	1.09
16819432--16819480	12	4.1	12	78	0	53	48	0	0	51	1.00
16820350--16820379	14	2.1	14	93	0	51	60	3	0	36	1.14
16821070--16822019	349	2.7	349	78	9	838	40	9	8	40	1.69
16821363--16822045	180	3.8	182	80	5	654	40	9	8	40	1.69
16821363--16822045	361	1.9	363	80	7	809	40	9	8	40	1.69
16822903--16822939	14	2.4	16	91	8	60	54	0	2	43	1.14
16823197--16823262	15	4.3	15	71	27	57	48	4	1	45	1.32
16828302--16828336	16	2.2	16	94	0	61	31	14	11	42	1.81
16828949--16829027	38	2.1	38	95	0	140	27	10	31	30	1.90
16830908--16830973	22	3.0	21	75	18	55	48	4	1	45	1.32
16831610--16831636	14	1.9	14	100	0	54	40	7	0	51	1.30
16831806--16831865	25	2.4	25	82	17	65	48	0	0	51	1.00
16832004--16832058	27	2.0	27	86	6	76	49	1	0	49	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16832646--16832745	6	16.2	6	71	18	64	50	1	2	47	1.19
16833947--16833992	18	2.6	18	86	13	60	56	6	0	36	1.25
16835194--16835248	17	3.2	16	75	10	56	47	1	0	50	1.11
16835191--16835237	20	2.4	19	82	6	58	44	2	0	53	1.12
16835330--16835399	18	3.7	19	75	12	65	45	0	2	51	1.16
16835866--16835985	51	2.4	48	76	13	125	50	1	2	45	1.25
16836098--16836162	29	2.2	29	78	13	71	43	0	1	55	1.09
16836462--16836515	22	2.5	21	77	11	56	59	3	1	35	1.26
16836521--16836562	21	2.0	20	86	13	57	42	0	0	57	0.99
16836858--16836883	7	3.7	7	100	0	52	42	0	11	46	1.40
16837006--16837045	15	2.6	16	84	15	57	52	0	2	45	1.14
16843085--16843120	19	1.9	18	88	5	54	27	13	13	44	1.82
16844216--16844292	38	2.0	38	90	5	120	25	9	31	33	1.87
16846059--16846126	21	3.2	21	80	10	75	48	0	0	51	1.00
16846066--16846114	26	2.0	23	88	11	71	44	0	0	55	0.99
16846063--16846174	32	3.8	30	75	21	103	47	1	0	50	1.18
16846058--16846235	76	2.3	75	78	12	177	48	1	1	47	1.21
16846171--16846249	27	2.9	27	80	12	74	49	2	2	45	1.29
16846302--16846409	17	6.1	17	68	16	58	49	1	1	47	1.23
16846673--16846704	15	2.1	16	94	5	57	50	0	0	50	1.00
16846784--16847209	180	2.4	180	82	4	504	44	8	7	39	1.64
16847227--16847259	15	2.2	15	89	10	50	42	3	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16848568--16848629	28	2.2	29	80	13	76	50	3	0	46	1.17
16848804--16848862	25	2.3	26	80	8	68	54	3	0	42	1.17
16848815--16848861	13	3.6	14	78	18	57	51	4	0	44	1.21
16848960--16849021	24	2.4	27	76	15	69	51	1	1	45	1.20
16848875--16849029	19	7.9	20	63	25	57	51	3	1	43	1.29
16849955--16849979	13	1.9	13	100	0	50	52	0	8	40	1.31
16850110--16850155	22	2.0	23	87	4	67	43	0	2	54	1.12
16850176--16850253	30	2.5	32	78	17	85	51	0	2	46	1.14
16850912--16851591	181	3.8	178	79	8	637	41	9	9	39	1.70
16850911--16851591	361	1.9	361	81	6	826	41	9	9	39	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113