genome.fa.s68.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  58  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14369928--14370137	63	3.3	62	66	18	155	37	11	14	36	1.83
14370040--14370575	185	2.9	184	87	2	770	39	10	13	36	1.80
14369721--14370723	493	2.0	499	80	5	1158	39	11	13	35	1.82
14378522--14378588	34	2.0	34	93	0	116	37	19	10	32	1.86
14381371--14381413	2	21.5	2	95	0	77	0	46	0	53	1.00
14392612--14392683	6	12.0	6	85	5	83	27	0	2	69	1.02
14393888--14393919	11	2.9	11	95	0	55	25	0	9	65	1.22
14394003--14394122	19	6.5	20	70	17	80	33	7	8	50	1.60
14394028--14394094	19	3.5	20	81	6	84	35	5	7	50	1.55
14394191--14394236	24	1.9	24	86	8	67	28	2	13	56	1.48
14395992--14396094	3	36.0	3	72	13	83	28	1	2	66	1.16
14395999--14396087	14	5.9	14	77	13	79	29	2	3	65	1.21
14395992--14396088	11	8.8	11	75	14	69	28	2	3	65	1.18
14396475--14396520	20	2.3	20	92	0	74	26	6	23	43	1.78
14396952--14396990	17	2.4	15	84	16	51	12	0	0	87	0.55
14396952--14396990	21	1.9	20	89	5	60	12	0	0	87	0.55
14397139--14397176	19	2.0	19	90	10	60	68	7	2	21	1.28
14397314--14397350	8	4.5	8	86	6	56	83	0	2	13	0.74
14397313--14397350	17	2.2	17	90	0	58	84	0	2	13	0.73
14397322--14397355	15	2.2	16	89	5	52	79	0	5	14	0.91
14401195--14401289	31	3.0	32	83	9	106	76	3	14	5	1.08
14401245--14401288	22	2.0	21	86	4	61	84	0	11	4	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14401961--14402488	120	4.4	119	79	4	526	18	21	14	46	1.84
14402415--14402546	56	2.4	56	88	0	183	21	25	14	39	1.91
14402807--14402899	3	31.3	3	87	6	127	31	2	1	65	1.11
14402883--14402922	21	2.0	20	85	5	53	12	5	0	82	0.82
14403290--14403331	20	2.1	20	86	0	57	19	4	23	52	1.65
14404067--14404106	8	5.0	8	85	11	55	85	2	2	10	0.80
14406256--14406304	22	2.2	22	82	7	55	79	0	12	8	0.93
14406603--14406637	13	2.8	12	87	8	52	74	11	11	2	1.18
14406603--14406648	13	3.7	13	82	5	51	78	8	10	2	1.05
14407261--14407307	20	2.3	20	96	0	85	29	14	25	29	1.95
14408577--14408721	45	3.2	46	81	2	141	31	7	18	42	1.78
14408589--14408751	46	3.6	46	79	3	123	31	9	19	40	1.82
14408577--14408742	91	1.8	90	80	1	197	31	8	19	40	1.81
14422479--14422508	15	1.9	16	93	6	53	46	10	10	33	1.71
14422503--14422538	2	18.0	2	100	0	72	50	0	0	50	1.00
14423586--14423659	26	2.7	27	72	8	69	58	2	0	39	1.13
14423942--14424001	29	2.1	29	93	0	102	48	15	23	13	1.79
14425880--14425982	33	3.1	32	86	8	93	14	50	5	29	1.66
14425994--14426189	36	5.4	36	85	1	248	22	45	6	25	1.76
14425934--14426186	108	2.3	108	81	7	307	19	47	5	27	1.73
14426152--14426470	105	3.0	105	98	0	611	22	45	5	26	1.74
14426234--14426397	51	3.2	51	68	23	160	21	46	4	26	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14426180--14426460	54	5.3	53	67	23	198	22	45	5	25	1.74
14427812--14427857	16	2.9	17	87	9	62	32	2	0	65	1.05
14427770--14427865	15	5.8	17	72	20	71	35	1	2	61	1.15
14429311--14429353	16	2.6	16	85	3	50	51	6	0	41	1.29
14432569--14432603	15	2.3	15	85	0	52	60	0	2	37	1.12
14433473--14433531	24	2.5	23	80	17	68	71	3	1	23	1.11
14433473--14433530	4	14.8	4	74	16	50	72	3	1	22	1.09
14433756--14433796	19	2.2	19	86	8	57	2	29	2	65	1.18
14443239--14443271	17	1.9	17	100	0	66	48	39	0	12	1.40
14443304--14443364	18	3.4	18	72	18	56	24	18	9	47	1.78
14444379--14444440	25	2.5	25	84	10	83	32	8	4	54	1.51
14444409--14444471	33	1.9	33	87	6	92	33	6	6	53	1.51
14454584--14454616	10	3.0	11	91	8	50	81	0	18	0	0.68
14455806--14456248	48	9.2	47	75	8	340	28	15	13	42	1.85
14455815--14456243	97	4.4	96	77	6	427	27	15	14	41	1.86
14455816--14456238	193	2.2	193	83	4	514	28	15	14	41	1.87
14458755--14458802	13	3.7	13	78	8	53	39	39	0	20	1.53
14458755--14458858	7	15.6	7	74	9	65	45	33	1	19	1.61
14458847--14458924	25	3.0	25	74	5	75	44	28	3	23	1.70
14461277--14461331	22	2.5	22	84	0	65	41	9	14	34	1.77
14461340--14461380	22	1.9	22	90	5	66	51	9	7	31	1.62
14461513--14461550	20	1.9	20	88	0	58	34	2	15	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14461619--14461734	22	5.3	22	69	11	60	50	9	6	32	1.61
14461687--14461829	22	6.6	22	73	7	96	46	9	7	36	1.66
14461674--14461810	66	2.1	66	82	5	161	46	9	8	35	1.66
14461723--14461808	44	2.0	44	83	4	111	45	9	9	36	1.69
14465889--14465917	3	9.7	3	100	0	58	34	0	31	34	1.58
14465916--14465960	3	15.0	3	95	0	81	64	0	2	33	1.06
14467485--14467521	2	19.5	2	83	10	51	45	0	0	54	1.00
14467485--14467521	11	3.2	12	88	7	51	45	0	0	54	1.00
14467485--14467521	15	2.5	15	90	0	56	45	0	0	54	1.00
14475664--14475705	15	2.6	16	81	7	50	50	0	7	42	1.30
14475790--14475939	28	5.1	29	71	20	109	40	0	3	55	1.21
14475778--14475956	18	10.2	18	71	12	122	40	1	2	55	1.22
14475778--14475965	64	3.2	55	73	19	157	42	1	2	54	1.21
14475824--14475944	23	5.1	23	75	14	102	40	0	3	55	1.22
14475810--14475944	72	1.9	73	88	1	209	40	0	3	55	1.23
14475823--14475952	49	2.6	50	80	11	158	42	0	3	53	1.21
14476562--14476605	12	3.8	12	81	6	63	72	0	22	4	1.02
14476562--14476608	11	3.9	13	81	13	57	70	0	23	6	1.10
14478059--14478271	105	2.0	105	92	1	356	32	9	4	53	1.54
14481004--14481273	88	3.0	88	79	6	280	45	6	5	42	1.54
14481285--14481429	72	2.0	72	83	1	184	43	6	9	40	1.64
14482817--14482846	11	2.7	11	89	0	51	16	0	30	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14482871--14483028	52	3.0	52	82	8	178	42	7	23	26	1.81
14484754--14484796	21	2.1	20	86	4	59	51	2	0	46	1.13
14486362--14486392	2	15.5	2	100	0	62	48	0	0	51	1.00
14486670--14486737	10	6.3	10	77	15	57	75	13	1	10	1.12
14486664--14486734	29	2.6	29	82	10	78	71	14	2	11	1.24
14486696--14486724	11	2.5	12	88	11	51	75	17	0	6	1.01
14486636--14486734	18	5.9	17	69	17	73	71	12	2	14	1.23
14486662--14486757	45	2.1	46	79	11	108	73	12	4	9	1.21
14487229--14487297	11	6.3	11	69	24	56	76	13	0	10	1.01
14487223--14487279	30	1.9	29	89	3	87	71	14	1	12	1.21
14487218--14487279	18	3.4	18	75	24	67	70	14	1	12	1.23
14486429--14488119	560	3.0	563	97	1	3185	39	19	10	30	1.86
14487785--14487882	15	6.2	16	71	21	73	76	12	3	8	1.12
14487793--14487862	11	6.3	11	75	18	65	77	12	0	10	1.00
14487759--14487858	37	2.9	34	77	17	100	73	12	1	14	1.16
14487787--14487862	30	2.7	28	84	8	93	75	13	1	10	1.12
14487793--14487863	12	6.2	12	75	14	53	77	12	0	9	0.99
14487793--14487864	26	2.6	26	78	8	72	77	12	0	9	0.98
14488707--14488761	22	2.5	22	81	3	56	20	36	21	21	1.95
14489268--14489332	16	4.2	16	71	15	64	50	26	0	23	1.49
14489362--14489401	21	2.0	20	85	5	53	50	30	0	20	1.49
14490609--14490733	4	29.8	4	68	19	60	31	1	3	64	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14490673--14490734	25	2.5	24	78	17	63	32	0	4	62	1.16
14490724--14490754	16	1.9	16	93	0	53	16	6	6	70	1.29
14490768--14490841	24	3.2	22	76	14	62	12	8	8	71	1.30
14490788--14490827	16	2.4	16	87	8	53	12	5	10	72	1.26
14491634--14491669	12	2.8	13	87	8	56	19	0	2	77	0.88
14491639--14491669	4	7.5	4	92	7	53	22	0	0	77	0.77
14491693--14491749	22	2.6	21	78	8	51	15	5	3	75	1.12
14491774--14492293	60	8.7	60	83	6	594	46	7	12	33	1.69
14491774--14492293	58	8.7	58	83	9	584	46	7	12	33	1.69
14504081--14504476	109	3.6	109	86	0	522	19	20	13	46	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113