genome.fa.s68.2.7.7.80.10.50.1000.45.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  45  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12266367--12266404	15	2.6	15	87	4	60	63	5	0	31	1.17
12266259--12266516	128	2.0	130	82	8	321	50	6	7	36	1.55
12266398--12266558	57	2.8	56	80	8	162	48	7	8	36	1.61
12266536--12266583	24	2.1	23	88	11	73	43	8	4	43	1.53
12266554--12266619	28	2.2	30	82	12	84	56	1	3	39	1.24
12266568--12266629	28	2.2	28	82	8	72	54	1	3	40	1.26
12267454--12267568	59	2.0	59	84	3	153	40	13	9	35	1.78
12267578--12267628	2	28.5	2	78	21	60	54	0	0	45	0.99
12267578--12267627	5	9.8	5	93	6	75	56	0	0	44	0.99
12267578--12267628	9	5.7	10	80	19	60	54	0	0	45	0.99
12274093--12274582	246	2.0	244	97	1	928	38	13	13	33	1.84
12276269--12276332	12	5.2	12	73	14	58	6	4	7	81	0.99
12276269--12276332	13	5.0	13	75	11	53	6	4	7	81	0.99
12276279--12276332	26	2.1	26	86	13	76	5	5	7	81	0.98
12276326--12276396	3	22.3	3	81	16	65	29	0	1	69	0.98
12287028--12287072	20	2.2	21	88	4	65	20	2	4	73	1.11
12288129--12288219	46	2.0	46	89	4	139	46	2	5	46	1.38
12291152--12291176	8	3.1	8	100	0	50	12	0	0	88	0.53
12291260--12291307	24	2.0	25	87	4	71	45	6	0	47	1.27
12291398--12291457	31	1.9	32	86	3	86	60	8	10	21	1.55
12292474--12292620	43	3.4	43	83	2	163	45	17	10	26	1.80
12293356--12293429	21	3.5	21	85	3	103	39	20	6	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12293431--12293487	22	2.6	22	88	0	69	43	15	7	33	1.74
12293452--12293517	32	2.1	32	91	0	105	42	18	6	33	1.75
12293377--12293540	54	3.1	54	84	1	206	43	16	5	34	1.71
12293487--12293570	43	2.0	42	90	2	132	44	11	7	36	1.69
12293492--12293580	22	4.1	22	78	8	101	39	13	7	39	1.74
12295324--12295354	14	2.2	14	100	0	62	22	0	6	70	1.09
12299027--12299085	26	2.4	24	80	5	64	44	8	5	42	1.57
12299181--12299241	31	1.9	32	83	3	79	57	13	6	22	1.59
12300517--12300756	119	2.0	118	90	0	372	42	11	14	31	1.82
12301984--12302640	293	2.2	292	78	2	717	32	14	18	34	1.91
12305450--12305489	15	2.6	15	88	4	53	65	5	30	0	1.14
12305926--12305987	24	2.5	24	75	12	63	29	4	1	64	1.23
12307390--12307430	11	3.2	13	80	16	50	43	2	4	48	1.37
12308068--12308129	20	3.2	20	76	2	63	58	4	1	35	1.29
12308017--12308158	64	2.2	63	80	14	150	56	4	2	37	1.31
12308122--12308177	23	2.4	23	84	3	67	48	3	3	44	1.37
12310568--12310608	21	2.0	20	85	9	55	31	0	7	60	1.24
12310920--12310963	22	2.0	22	86	0	61	38	6	4	50	1.50
12311006--12311334	104	3.2	102	80	7	353	33	10	12	43	1.76
12311241--12311360	50	2.4	49	81	5	150	36	10	12	40	1.78
12311140--12311461	152	2.1	152	82	5	391	35	9	12	43	1.73
12311394--12311572	50	3.6	47	77	8	126	36	13	10	39	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12311224--12311545	153	2.1	152	78	7	330	36	10	11	41	1.76
12311439--12311622	49	3.7	49	77	9	178	35	11	10	41	1.77
12311567--12311755	98	1.9	98	83	2	245	34	8	14	42	1.77
12313842--12313931	44	2.1	44	86	8	125	63	3	6	26	1.35
12313855--12313921	12	5.2	12	74	15	53	67	4	2	25	1.24
12313842--12313927	38	2.2	41	85	8	117	62	3	6	26	1.37
12315592--12315616	5	5.0	5	100	0	50	0	20	0	80	0.72
12316736--12316762	2	13.5	2	100	0	54	48	0	0	51	1.00
12319210--12319259	21	2.5	20	81	15	66	40	0	2	58	1.10
12320960--12321176	62	3.5	62	78	10	244	40	11	11	37	1.77
12324873--12325198	15	20.3	15	69	19	73	42	1	2	53	1.20
12324943--12325241	18	16.0	19	69	18	125	39	1	3	56	1.23
12324957--12325302	15	22.8	15	71	19	204	40	1	2	55	1.22
12324957--12325281	68	4.9	67	73	18	254	40	1	2	55	1.22
12325217--12325273	28	2.0	28	89	0	87	45	1	1	50	1.22
12324960--12325174	57	3.5	63	74	16	116	41	0	2	55	1.19
12324958--12325277	46	6.6	48	72	18	195	41	1	2	54	1.23
12326215--12326255	13	3.2	13	86	10	57	68	2	0	29	1.03
12325826--12326754	497	1.9	496	87	5	1367	43	6	6	42	1.58
12328170--12328211	23	1.9	22	85	9	59	64	9	0	26	1.24
12336913--12336963	27	1.9	27	84	4	68	68	0	0	31	0.90
12337147--12337190	21	2.1	21	84	16	56	43	2	4	50	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12337847--12337871	2	12.5	2	100	0	50	52	0	0	48	1.00
12340557--12340621	18	3.4	18	74	12	67	33	23	4	38	1.75
12340566--12340633	21	3.2	20	77	4	64	30	25	4	39	1.75
12340569--12340615	12	3.9	12	75	10	51	27	27	6	38	1.81
12340569--12340615	24	2.0	24	87	8	69	27	27	6	38	1.81
12341989--12342034	6	8.0	6	90	9	78	13	0	34	52	1.40
12341989--12342034	17	2.7	18	93	6	78	13	0	34	52	1.40
12341989--12342034	23	2.0	23	100	0	92	13	0	34	52	1.40
12345830--12345869	3	13.3	3	100	0	80	32	0	0	67	0.91
12346270--12346334	32	2.0	32	90	0	103	44	6	16	32	1.73
12346365--12346407	20	2.1	21	86	4	61	13	16	0	69	1.19
12349758--12349807	6	8.3	6	95	0	91	14	0	34	52	1.42
12352935--12352990	25	2.2	25	81	15	62	46	0	5	48	1.25
12352955--12352990	11	2.8	14	76	24	51	52	0	0	47	1.00
12353586--12353625	3	13.3	3	100	0	80	32	0	0	67	0.91
12354026--12354090	32	2.0	32	90	0	103	44	6	16	32	1.73
12354119--12354163	21	2.1	22	87	4	65	13	15	0	71	1.15
12355329--12355394	34	1.9	34	84	6	89	42	7	13	36	1.73
12357488--12357555	29	2.4	28	80	5	73	50	2	2	44	1.32
12357514--12357573	20	3.1	20	71	19	56	58	1	1	38	1.18
12358386--12358469	42	2.0	42	97	0	159	34	5	7	52	1.53
12365154--12365232	29	2.7	28	70	14	70	30	7	5	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12365971--12366013	12	3.3	13	79	20	54	44	0	0	55	0.99
12366556--12366595	13	2.8	14	85	14	55	30	0	0	70	0.88
12366546--12366596	11	4.3	12	75	12	52	31	0	0	68	0.90
12369210--12369271	32	1.9	32	83	6	81	43	0	0	56	0.99
12369234--12369278	13	3.4	13	81	3	54	37	0	0	62	0.96
12369328--12369352	6	4.2	6	100	0	50	20	0	64	16	1.30
12388053--12388116	27	2.3	28	84	7	78	39	0	0	60	0.97
12388068--12388116	13	3.3	15	75	13	57	36	0	0	63	0.95
12388838--12388925	33	2.6	33	78	5	79	37	4	12	45	1.63
12390110--12390143	17	2.0	17	88	0	50	47	0	2	50	1.16
12392183--12392228	22	2.1	22	100	0	92	17	10	17	54	1.70
12405183--12405215	17	1.9	17	88	11	50	78	0	0	21	0.75
12405182--12405211	15	2.0	15	93	0	51	76	0	0	23	0.78
12405245--12405285	22	1.9	22	85	5	57	56	9	0	34	1.32
12409691--12409718	14	2.0	14	100	0	56	35	21	7	35	1.81
12419312--12419435	22	5.6	22	72	5	63	50	6	4	37	1.49
12419755--12419866	44	2.6	43	77	7	109	56	2	7	33	1.41
12419916--12420043	68	1.9	68	93	0	220	42	6	7	42	1.58
12419942--12420043	30	3.1	30	66	22	71	43	5	7	43	1.57
12420027--12420099	22	3.3	22	77	7	67	45	5	4	45	1.45
12420494--12420561	11	6.3	11	77	3	75	57	2	1	38	1.23
12420487--12420646	22	7.3	22	73	9	103	50	5	6	38	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12420707--12420805	43	2.3	43	82	3	108	47	8	7	37	1.60
12420868--12420918	21	2.4	22	86	6	77	43	1	11	43	1.52
12420861--12421032	11	16.0	11	65	10	61	44	5	8	41	1.58
12420889--12420963	30	2.4	30	78	12	82	44	4	9	42	1.55
12420915--12421134	22	9.8	22	78	8	176	43	5	9	41	1.61
12421023--12421100	26	3.2	25	79	17	83	44	3	11	39	1.59
12420915--12421102	71	2.8	66	81	8	202	44	5	9	41	1.59
12420915--12421159	44	5.5	44	76	8	172	44	6	9	40	1.62
12421410--12421465	21	2.8	20	73	21	53	53	5	3	37	1.41
12421441--12421505	22	3.0	21	86	6	94	52	7	1	38	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113