genome.fa.s68.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  38  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11001239--11001283	8	5.4	8	79	10	54	46	2	2	48	1.26
11001239--11001284	9	5.3	9	82	7	51	45	2	2	50	1.26
11001580--11001646	34	2.0	34	91	5	109	49	4	5	40	1.48
11001591--11001658	17	3.9	18	70	12	54	51	1	4	42	1.31
11009787--11009839	9	6.1	9	78	17	51	75	0	3	20	0.96
11011017--11011276	53	5.1	52	67	18	152	50	7	13	28	1.68
11011060--11011190	54	2.5	52	74	14	124	54	7	10	26	1.61
11011000--11011291	95	2.9	105	80	13	290	51	7	12	28	1.66
11020848--11020904	28	2.0	28	100	0	114	29	14	10	45	1.78
11028061--11028115	27	2.0	27	100	0	110	38	21	14	25	1.92
11035898--11035923	12	2.2	12	100	0	52	42	15	7	34	1.75
11038782--11040657	624	3.0	624	94	0	3243	24	21	19	34	1.97
11043723--11043768	24	2.0	23	84	12	60	32	0	2	65	1.05
11045453--11045481	12	2.4	12	100	0	58	48	6	0	44	1.29
11053430--11053459	13	2.4	13	94	5	53	23	0	6	70	1.11
11054133--11054302	57	3.0	55	80	5	214	50	4	8	36	1.53
11054285--11054318	16	2.2	16	89	5	52	50	5	0	44	1.26
11054199--11054691	129	3.8	129	81	8	538	47	5	10	35	1.63
11054363--11054511	72	2.1	73	83	6	187	48	6	13	32	1.67
11054435--11054569	58	2.3	57	79	10	132	48	5	13	33	1.64
11054544--11054589	17	2.8	16	83	6	65	58	6	2	32	1.36
11054458--11054569	58	1.9	58	82	8	140	45	5	14	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11054504--11054644	75	1.9	74	91	4	230	50	4	9	35	1.56
11054560--11054693	58	2.3	58	86	1	187	50	5	8	35	1.57
11054802--11054839	9	4.2	9	80	12	51	10	7	2	78	1.04
11055771--11055796	4	6.5	4	100	0	52	46	0	0	53	1.00
11060048--11060087	20	2.0	20	100	0	80	40	20	15	25	1.90
11061745--11061775	8	3.9	8	95	0	53	12	22	0	64	1.27
11065254--11065313	15	3.9	16	74	10	54	81	1	5	11	0.91
11065256--11065313	7	7.9	7	76	17	55	82	1	5	10	0.89
11066020--11066058	21	1.9	20	85	15	53	25	17	17	38	1.92
11066029--11066059	16	1.9	16	93	0	53	22	19	19	38	1.93
11066370--11066569	44	4.5	43	77	7	186	26	12	16	45	1.82
11066369--11066569	88	2.3	89	81	5	239	26	12	15	44	1.82
11067599--11067645	3	15.7	3	86	0	67	27	2	4	65	1.22
11067599--11067645	12	3.9	12	88	0	76	27	2	4	65	1.22
11067748--11068033	57	4.9	56	73	11	211	46	6	11	35	1.66
11067911--11068152	128	1.9	129	83	7	323	47	4	11	35	1.62
11071502--11071536	18	2.0	17	88	5	52	34	8	8	48	1.64
11076746--11076796	4	12.8	4	79	8	59	66	1	0	31	1.03
11076682--11076798	32	3.5	32	75	8	117	57	4	4	34	1.38
11077142--11077244	45	2.3	45	83	5	127	21	11	7	59	1.57
11077161--11077252	45	2.1	44	87	6	132	22	11	10	54	1.68
11080311--11080480	30	5.7	30	71	8	112	38	29	17	14	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11080431--11080493	30	2.1	30	88	5	92	39	28	17	14	1.89
11080457--11080555	36	2.7	35	80	6	110	39	27	18	15	1.90
11080622--11080698	30	2.6	29	79	6	82	41	35	11	11	1.78
11083561--11083614	24	2.2	24	86	0	72	37	3	3	55	1.35
11088894--11088953	8	7.8	8	79	3	52	35	0	1	63	1.05
11088886--11088951	25	2.6	25	77	11	64	36	0	1	62	1.05
11096045--11096091	13	3.6	13	85	0	67	68	0	0	31	0.90
11096038--11096089	26	2.0	26	92	0	86	65	0	0	34	0.93
11096610--11096676	30	2.2	30	87	7	100	44	7	1	46	1.40
11096615--11096666	14	3.6	14	72	10	50	38	5	1	53	1.36
11096657--11096707	17	3.0	17	75	8	50	43	7	0	49	1.32
11098269--11098306	2	19.0	2	100	0	76	50	0	0	50	1.00
11098531--11098581	26	2.0	26	100	0	102	43	9	11	35	1.75
11104003--11104028	2	13.0	2	100	0	52	50	0	0	50	1.00
11108659--11108845	93	2.0	92	92	1	311	31	14	17	36	1.90
11112812--11112968	52	3.0	52	99	0	305	38	5	7	49	1.54
11116439--11116483	13	3.4	13	81	6	54	53	2	2	42	1.25
11116451--11116487	15	2.5	15	91	4	58	56	0	0	43	0.99
11116796--11116838	22	1.9	23	90	4	70	55	2	4	37	1.33
11117414--11117471	24	2.4	24	85	5	73	41	1	0	56	1.09
11117584--11117618	17	2.1	17	89	5	54	77	2	0	20	0.90
11124757--11124799	22	1.9	23	90	4	70	39	6	0	53	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11125381--11125453	38	1.9	38	100	0	146	58	2	2	35	1.26
11142999--11143036	2	19.0	2	100	0	76	50	0	50	0	1.00
11161460--11161524	17	3.8	17	77	8	60	64	0	0	35	0.94
11162221--11162274	23	2.5	20	82	14	63	22	7	0	70	1.12
11169299--11169332	10	3.1	11	88	12	52	50	0	0	50	1.00
11169812--11169845	17	1.9	18	88	5	52	20	0	5	73	1.04
11171294--11171323	3	10.0	3	92	0	51	63	0	3	33	1.11
11179181--11179240	25	2.4	25	91	0	93	40	1	35	23	1.65
11179210--11179312	50	2.1	48	82	7	118	33	7	36	22	1.83
11179245--11179312	25	2.9	22	77	14	73	30	8	36	23	1.85
11179533--11179571	11	3.5	11	92	0	69	17	0	28	53	1.44
11179596--11179752	52	3.0	52	84	1	199	40	8	25	25	1.84
11180349--11180425	31	2.5	31	89	0	109	29	16	25	27	1.97
11180425--11180454	14	2.1	14	93	0	51	20	13	36	30	1.90
11181759--11181844	43	2.0	43	95	0	154	46	6	23	23	1.76
11181919--11181958	20	2.0	20	100	0	80	40	10	20	30	1.85
11182080--11182156	39	2.0	39	100	0	154	27	2	33	36	1.71
11188097--11188137	13	3.3	13	80	6	50	39	0	0	60	0.96
11191204--11191292	22	3.9	22	75	15	83	17	2	31	48	1.60
11191261--11191304	23	1.9	22	85	4	52	20	4	29	45	1.71
11191295--11191355	25	2.4	26	86	2	79	16	0	32	50	1.45
11191231--11191371	8	17.8	8	69	13	78	15	2	33	48	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11191299--11191456	8	19.8	8	66	11	56	21	1	27	49	1.60
11191401--11191458	24	2.5	22	71	10	62	27	1	18	51	1.56
11191831--11191873	21	2.0	22	86	4	61	46	13	0	39	1.44
11192058--11192097	2	20.0	2	89	0	53	55	2	0	42	1.13
11200704--11200751	23	2.1	23	84	7	62	4	10	8	77	1.12
11211172--11211219	18	2.7	18	78	12	62	70	2	2	25	1.09
11214027--11214078	27	1.9	27	88	0	77	40	9	7	42	1.66
11217310--11217361	25	2.1	25	100	0	104	48	3	28	19	1.66
11219352--11219431	41	2.0	41	85	5	108	53	1	16	28	1.50
11224416--11224448	3	11.0	3	100	0	66	66	0	0	33	0.92
11225590--11225644	22	2.4	23	82	11	69	56	1	1	40	1.21
11227298--11227331	2	17.0	2	90	0	50	50	2	2	44	1.32
11236705--11236759	27	2.1	26	83	10	67	36	7	0	56	1.27
11242466--11242669	110	1.9	110	96	0	381	24	20	22	33	1.97
11243464--11243497	13	2.6	13	90	9	52	26	5	0	67	1.13
11243604--11243637	7	4.6	7	89	10	50	73	0	2	23	0.97
11243604--11243638	15	2.2	16	95	5	63	74	0	2	22	0.95
11245640--11245706	22	3.0	22	78	6	73	38	0	29	31	1.58
11246187--11246347	85	1.9	86	83	8	213	38	4	16	40	1.69
11246326--11246400	35	2.1	35	85	4	98	34	4	21	40	1.72
11246332--11246400	36	1.9	35	88	2	102	36	2	23	37	1.70
11246960--11246998	8	4.6	8	87	6	51	79	0	7	12	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11247237--11247272	12	3.1	11	88	11	54	33	0	0	66	0.92
11247276--11247330	16	3.6	16	73	9	51	47	0	0	52	1.00
11247272--11247330	30	2.0	30	89	0	91	47	0	0	52	1.00
11247625--11247662	16	2.3	16	90	4	58	50	0	0	50	1.00
11247630--11247662	16	2.1	16	94	5	59	48	0	0	51	1.00
11249720--11249987	8	34.4	8	68	18	104	17	0	32	49	1.53
11249901--11249960	25	2.4	26	83	8	79	21	0	30	48	1.51
11249913--11250044	16	8.2	16	70	10	58	20	0	25	53	1.51
11249964--11250110	71	2.0	73	83	5	183	23	1	21	53	1.53
11250220--11250249	3	10.0	3	100	0	60	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113