genome.fa.s68.2.7.7.80.10.50.1000.69.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  69  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16040761--16040851	46	2.0	46	88	0	137	39	20	7	31	1.81
16041729--16041858	69	1.9	69	86	0	188	38	13	20	28	1.89
16041873--16042166	121	2.4	121	81	6	321	44	15	21	18	1.86
16042085--16042212	56	2.3	56	82	2	159	42	15	22	19	1.89
16041971--16042365	177	2.2	177	83	2	488	44	15	21	18	1.86
16042381--16042514	56	2.4	56	85	6	173	45	16	18	19	1.86
16043364--16043456	21	4.4	21	78	2	87	1	8	4	86	0.76
16043365--16043456	20	4.9	18	75	11	78	1	8	4	85	0.76
16043370--16043456	35	2.5	34	83	1	102	0	9	4	86	0.71
16043364--16043478	18	6.4	18	75	16	96	3	9	3	83	0.88
16043364--16043478	9	12.8	9	76	13	87	3	9	3	83	0.88
16043364--16043456	1	93.0	1	76	0	69	1	8	4	86	0.76
16043730--16043776	13	3.5	13	75	16	51	0	6	10	82	0.82
16050200--16050283	19	4.2	19	76	11	71	75	1	21	2	0.99
16050797--16050858	14	4.1	14	74	15	52	72	3	16	8	1.21
16050831--16050889	22	2.7	22	83	0	82	77	0	18	3	0.90
16050840--16050903	31	2.1	30	85	5	85	78	1	18	1	0.92
16051281--16051322	16	2.8	16	78	7	52	78	4	14	2	1.01
16052504--16052564	32	1.9	32	86	6	88	32	16	19	31	1.94
16057763--16057792	15	2.0	15	93	0	51	73	3	0	23	0.98
16059974--16060004	16	1.9	16	100	0	62	32	6	12	48	1.67
16065697--16065887	98	1.9	98	86	0	265	40	3	10	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16067196--16067239	5	8.8	5	84	0	61	68	0	31	0	0.90
16067196--16067239	20	2.2	20	95	0	79	68	0	31	0	0.90
16068352--16068392	17	2.5	17	81	18	59	75	0	0	24	0.80
16068358--16068393	17	2.1	18	94	5	65	75	0	0	25	0.81
16077874--16078106	114	2.1	112	89	3	351	37	12	12	37	1.81
16080480--16080509	1	30.0	1	93	0	51	96	0	3	0	0.21
16083919--16083966	22	2.2	22	88	7	71	43	2	0	54	1.12
16085270--16085305	18	2.1	18	89	5	56	41	2	2	52	1.30
16086191--16086231	21	2.0	21	85	0	55	41	26	4	26	1.76
16087464--16087747	113	2.6	109	81	5	295	40	10	11	36	1.76
16089127--16089156	15	2.0	15	93	0	51	70	3	0	26	1.03
16089338--16089428	46	2.0	47	88	2	139	26	13	17	42	1.86
16090651--16090707	18	3.1	18	74	2	60	45	15	8	29	1.77
16090699--16090763	18	3.7	18	72	10	62	35	13	16	33	1.89
16090773--16090806	18	1.9	18	94	5	61	35	17	11	35	1.87
16090778--16090966	18	10.6	18	71	8	75	40	16	12	30	1.85
16090813--16090983	54	3.2	52	76	7	146	41	15	12	30	1.84
16090969--16091051	17	4.9	17	80	5	87	33	12	14	39	1.83
16091315--16091507	46	4.2	46	79	2	165	43	15	7	34	1.75
16091420--16091490	22	3.1	21	75	15	70	46	16	2	33	1.62
16091429--16091501	22	3.2	23	76	7	85	49	12	4	34	1.59
16091253--16091507	92	2.8	91	73	4	228	41	15	7	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16095426--16095450	8	3.1	8	100	0	50	40	12	24	24	1.88
16097435--16097472	20	2.0	20	89	5	60	34	2	0	63	1.09
16097625--16097649	13	1.9	13	100	0	50	72	0	4	24	1.02
16098761--16098813	6	8.8	6	78	0	52	58	5	1	33	1.32
16098905--16098970	33	2.0	33	100	0	132	45	9	6	39	1.61
16101221--16101253	17	1.9	17	100	0	66	48	9	18	24	1.76
16106196--16106297	51	2.0	51	98	0	195	41	20	13	24	1.89
16107741--16107812	29	2.5	30	80	10	78	36	0	0	63	0.94
16107753--16107808	25	2.3	23	85	11	69	33	0	0	66	0.92
16107802--16107850	23	2.2	23	92	7	84	44	0	0	55	0.99
16109967--16110258	147	2.0	147	85	6	401	42	11	10	35	1.75
16110423--16110485	29	2.2	29	97	0	117	38	12	15	33	1.86
16116762--16116857	46	2.0	48	88	4	142	41	8	10	39	1.69
16118921--16118982	30	2.1	30	90	0	97	37	22	1	38	1.64
16119190--16119264	38	2.0	37	97	2	141	49	13	13	24	1.77
16122723--16122904	59	3.0	61	83	6	226	22	12	8	56	1.63
16123433--16123463	16	2.0	16	93	6	55	16	0	0	83	0.64
16123431--16123464	11	2.9	12	86	8	52	20	0	0	79	0.73
16124802--16124841	15	2.7	15	77	14	55	42	25	5	27	1.75
16124832--16125158	21	14.8	22	66	24	113	37	14	9	37	1.79
16124953--16125045	25	3.9	25	72	16	97	38	13	7	39	1.74
16124859--16125059	107	1.9	104	85	7	280	38	16	8	36	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16124963--16125158	46	4.3	47	83	4	220	37	13	9	39	1.78
16125510--16125553	23	1.9	23	86	9	63	29	18	4	47	1.68
16126411--16126453	16	2.6	18	78	17	56	9	20	0	69	1.15
16128660--16128700	16	2.5	17	85	14	59	75	2	0	21	0.92
16128660--16128700	17	2.5	16	84	4	55	75	2	0	21	0.92
16128662--16128700	8	4.8	8	85	14	53	74	2	0	23	0.94
16130472--16130549	3	25.3	3	87	5	66	64	7	2	25	1.33
16130471--16130499	13	2.1	14	93	6	51	68	0	0	31	0.89
16130664--16130710	15	3.1	15	75	22	53	76	2	4	17	1.04
16130840--16130921	26	3.2	26	79	10	89	52	15	8	23	1.70
16130857--16130897	14	3.1	14	75	13	50	56	14	7	21	1.63
16130845--16130922	12	6.3	12	78	11	79	52	14	8	24	1.69
16130888--16131004	51	2.3	50	92	1	189	45	21	11	22	1.83
16130980--16131076	19	5.1	19	73	6	79	46	23	8	21	1.78
16134981--16135007	4	6.8	4	100	0	54	25	25	0	48	1.52
16137910--16137946	19	1.9	19	88	0	56	78	5	13	2	1.03
16137907--16137956	20	2.5	20	80	9	57	80	4	12	4	1.00
16138803--16138895	18	5.2	18	94	0	168	31	7	26	34	1.84
16139273--16139599	32	10.4	32	71	10	160	34	17	14	33	1.90
16139843--16139970	31	4.1	31	76	7	107	24	25	10	39	1.87
16140002--16140079	31	2.5	31	81	4	95	26	30	8	33	1.87
16140368--16140426	12	4.9	12	75	21	52	72	6	0	20	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16140381--16140448	28	2.6	25	78	15	82	69	7	0	23	1.14
16141459--16141483	13	1.9	13	100	0	50	16	28	0	56	1.41
16143735--16143796	13	4.9	13	76	7	56	53	19	6	20	1.67
16143735--16143815	24	3.3	24	75	3	63	51	16	8	23	1.71
16143735--16143797	12	5.1	12	80	1	54	52	19	6	22	1.68
16143866--16143991	19	6.6	18	72	10	74	43	28	9	18	1.81
16143824--16143934	38	2.9	38	80	11	111	45	23	11	19	1.83
16143866--16144000	38	3.5	39	78	5	134	43	28	8	19	1.80
16143866--16143991	57	2.2	57	81	2	146	43	28	9	18	1.81
16149346--16149601	47	5.4	47	79	5	230	46	12	12	28	1.79
16149346--16149601	48	5.4	47	79	5	214	46	12	12	28	1.79
16149402--16149601	97	2.1	95	85	4	269	45	14	11	28	1.80
16151821--16151854	16	2.1	16	94	0	59	70	5	0	23	1.09
16153093--16153506	43	9.8	41	72	13	161	41	16	15	27	1.88
16153135--16153509	86	4.4	83	76	7	308	41	16	15	26	1.87
16164293--16164337	4	11.2	4	85	0	63	66	4	2	26	1.22
16174130--16174285	25	6.2	25	80	4	179	53	8	9	27	1.63
16174984--16175029	8	5.9	8	87	7	60	10	0	4	84	0.75
16174982--16175018	7	5.1	7	90	6	56	10	0	2	86	0.67
16174982--16175029	15	3.1	15	85	14	71	12	0	4	83	0.79
16174982--16175027	22	2.0	23	91	4	76	10	0	4	84	0.75
16175487--16175620	7	19.7	7	72	10	64	21	2	34	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16175503--16175593	19	4.6	21	75	6	66	23	3	36	37	1.71
16175564--16175598	13	2.7	13	95	0	61	14	2	37	45	1.59
16175629--16175662	14	2.4	14	90	0	50	20	11	23	44	1.84
16175824--16175868	23	1.9	24	81	4	56	53	13	11	22	1.71
16176981--16177037	13	4.3	13	76	10	53	5	22	0	71	1.05
16178845--16178890	12	3.8	12	82	5	58	47	10	19	21	1.80
16178845--16178890	24	1.9	24	86	0	65	47	10	19	21	1.80
16179692--16179738	15	3.3	14	83	13	51	78	2	8	10	1.04
16179691--16179729	20	1.9	19	85	10	51	74	2	10	12	1.17
16180260--16180285	9	2.9	9	100	0	52	30	23	11	34	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113