genome.fa.s68.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  8  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2230881--2230933	21	2.5	22	84	3	72	69	0	1	28	0.99
2242426--2242502	38	2.0	38	94	0	136	41	15	18	24	1.89
2262892--2262934	23	1.9	22	85	4	59	18	11	2	67	1.32
2269423--2269479	27	2.1	27	96	0	105	42	12	14	31	1.82
2274792--2274819	2	14.0	2	100	0	56	50	0	0	50	1.00
2281630--2281682	13	4.2	13	73	9	56	67	0	1	30	1.01
2281642--2281686	17	2.7	16	80	10	54	64	0	4	31	1.13
2281615--2281683	24	2.8	25	72	14	70	62	0	1	36	1.04
2281766--2281825	20	3.0	20	68	22	54	53	1	0	45	1.10
2281787--2281850	33	1.9	33	87	0	92	48	6	1	43	1.37
2281787--2281858	33	2.2	33	84	0	90	50	6	1	41	1.38
2287878--2287939	23	2.8	22	74	13	65	54	8	8	29	1.58
2296772--2296801	3	10.0	3	100	0	60	66	0	33	0	0.92
2297740--2297766	6	4.5	6	100	0	54	33	14	51	0	1.43
2300233--2300271	19	2.1	19	95	0	69	38	20	10	30	1.86
2301016--2301040	13	1.9	13	100	0	50	36	8	16	40	1.77
2314644--2314682	18	2.1	19	90	4	62	51	2	2	43	1.29
2314672--2314770	51	2.0	51	91	2	164	47	2	2	48	1.24
2314724--2314770	19	2.4	19	79	10	51	42	2	2	53	1.25
2317125--2317274	76	2.0	76	90	0	237	34	14	18	32	1.91
2321087--2321116	2	15.0	2	100	0	60	50	0	50	0	1.00
2322382--2322884	200	2.5	198	75	6	465	31	15	10	41	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2332224--2332638	208	2.0	208	90	2	661	34	11	10	44	1.74
2335351--2335466	54	2.2	52	81	9	128	59	3	6	31	1.38
2335749--2335780	16	1.9	17	93	6	57	50	0	0	50	1.00
2337450--2337500	24	2.1	24	82	7	59	58	5	7	27	1.49
2337641--2337732	45	2.0	45	83	4	114	29	11	19	39	1.88
2339464--2339516	26	2.0	26	85	0	70	32	5	0	62	1.19
2343348--2343410	31	2.0	31	93	0	108	31	19	26	22	1.97
2348267--2348293	12	2.2	12	100	0	54	14	7	18	59	1.58
2351029--2351095	12	5.4	13	74	15	70	38	0	1	59	1.06
2351028--2351083	23	2.5	22	76	23	62	39	0	1	58	1.08
2351029--2351108	26	3.2	25	78	16	85	38	0	2	58	1.11
2351058--2351113	13	4.1	14	80	13	55	39	0	5	55	1.23
2351130--2351186	19	3.1	18	78	9	53	47	3	3	45	1.37
2351136--2351193	19	3.1	19	72	16	50	46	5	1	46	1.35
2351191--2351331	72	1.9	73	81	4	169	37	3	6	52	1.44
2351335--2351481	74	2.0	77	84	10	198	43	5	3	47	1.43
2366806--2366842	19	1.9	19	88	0	56	40	10	13	35	1.80
2370789--2370825	17	2.1	18	90	5	58	72	0	5	21	1.04
2371068--2371114	23	2.0	23	84	8	60	63	2	0	34	1.06
2378684--2378991	153	2.0	153	87	4	451	34	21	14	29	1.93
2380529--2380584	29	2.0	28	83	13	71	57	5	0	37	1.22
2382855--2382903	15	2.9	17	82	11	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2382851--2382906	25	2.3	24	79	11	69	53	0	0	46	1.00
2383822--2383860	17	2.2	18	86	13	55	51	7	0	41	1.31
2384377--2384416	22	1.9	21	90	10	64	37	0	0	62	0.95
2384452--2384497	18	2.6	18	82	0	56	30	0	2	67	1.03
2384447--2384491	23	2.0	23	82	8	56	26	0	4	68	1.08
2388551--2388590	21	2.0	20	85	5	53	55	0	0	45	0.99
2388620--2388667	24	2.0	24	84	8	62	35	2	8	54	1.42
2390125--2390181	27	2.1	27	83	0	69	49	1	0	49	1.11
2396925--2396955	15	2.1	14	94	5	53	90	0	0	9	0.46
2401344--2401393	23	2.3	21	79	6	55	70	0	26	4	1.05
2401943--2401985	2	21.5	2	95	0	50	51	9	0	39	1.34
2402645--2402669	2	12.5	2	100	0	50	52	0	0	48	1.00
2412292--2412337	13	3.4	14	75	19	53	30	0	2	67	1.03
2412719--2412758	20	2.0	20	85	9	55	60	0	0	40	0.97
2412720--2412770	21	2.4	21	80	3	57	62	0	0	37	0.95
2424644--2424731	28	3.2	28	65	28	73	46	1	1	51	1.15
2424655--2424692	16	2.3	17	86	4	60	42	0	0	57	0.98
2425671--2425741	31	2.2	33	80	12	85	56	1	1	40	1.17
2425778--2425845	28	2.3	31	80	12	79	52	2	1	42	1.25
2427216--2427263	3	16.0	3	86	0	51	41	35	22	0	1.54
2427446--2427476	13	2.4	13	94	0	53	35	3	29	32	1.73
2427808--2427837	3	10.0	3	100	0	60	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2449159--2449206	17	2.7	18	75	15	55	39	2	0	58	1.10
2449158--2449215	17	3.3	18	69	23	52	34	1	0	63	1.04
2454581--2454632	22	2.4	21	84	9	68	75	0	1	23	0.91
2455740--2455820	29	2.8	29	77	7	83	56	1	2	39	1.20
2464642--2465015	182	2.1	182	98	0	730	33	18	17	30	1.94
2468558--2468632	34	2.1	34	81	13	82	56	2	2	38	1.28
2472908--2472956	22	2.2	23	85	10	66	55	2	2	40	1.23
2484451--2484508	20	2.8	20	72	12	55	60	0	0	39	0.97
2485625--2485670	19	2.5	20	75	13	53	60	4	0	34	1.16
2491618--2491651	16	2.1	17	88	5	52	61	0	2	35	1.11
2500871--2500940	35	2.0	35	97	0	131	42	7	20	30	1.78
2501397--2501423	7	3.9	7	100	0	54	14	0	14	70	1.17
2505392--2505440	20	2.4	20	79	3	53	42	4	0	53	1.20
2518913--2518968	20	2.7	21	69	20	55	28	14	3	53	1.57
2520234--2520306	26	2.8	24	82	12	74	42	1	1	54	1.17
2520319--2520363	20	2.3	19	77	11	54	53	0	0	46	1.00
2520286--2520349	24	2.5	24	73	14	58	53	0	0	46	1.00
2522717--2522755	20	2.0	20	94	0	69	43	15	2	38	1.60
2527182--2527221	22	1.9	20	85	10	53	57	20	5	17	1.58
2544392--2544429	12	3.2	12	81	11	51	81	2	10	5	0.94
2548425--2548487	14	4.2	14	75	18	56	55	0	0	44	0.99
2548425--2548517	23	4.0	23	75	9	82	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2552014--2552098	7	13.7	6	89	6	57	20	7	3	69	1.27
2552043--2552081	7	5.6	7	100	0	78	25	12	0	61	1.31
2556647--2556690	14	3.1	15	87	6	65	61	0	0	38	0.96
2556662--2556709	15	3.1	14	78	18	51	54	0	0	45	0.99
2556647--2556739	23	4.0	23	74	9	73	54	0	0	45	0.99
2557832--2557870	19	1.9	19	85	10	51	23	5	5	66	1.32
2559203--2559233	9	3.3	9	95	4	53	38	0	0	61	0.96
2560240--2560290	14	3.8	13	92	5	68	23	3	0	72	1.01
2560236--2560382	6	23.5	6	67	15	66	23	4	1	70	1.15
2560298--2560334	14	2.6	15	83	12	51	21	5	0	72	1.04
2561745--2561776	16	2.0	16	93	0	55	21	6	6	65	1.38
2566276--2566397	45	2.7	44	77	3	136	34	9	14	40	1.79
2566494--2566552	21	2.7	22	72	10	59	35	8	8	47	1.64
2566583--2566650	21	3.1	21	69	19	50	33	10	14	41	1.80
2566473--2566659	81	2.3	80	76	9	189	35	7	13	42	1.73
2566904--2566936	17	1.9	17	93	0	57	30	9	15	45	1.77
2567191--2567723	42	12.6	42	76	11	303	26	12	13	47	1.79
2567190--2567745	85	6.6	84	77	9	404	26	12	13	47	1.79
2567191--2567745	169	3.3	168	77	9	524	26	12	13	47	1.79
2567279--2567746	42	11.1	42	76	10	330	25	13	13	47	1.80
2573816--2573961	51	2.8	52	76	8	145	37	7	16	38	1.77
2574479--2574527	10	4.9	10	82	7	64	18	2	2	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2574448--2574520	30	2.4	31	75	16	73	16	2	4	76	1.05
2574448--2574530	41	2.0	41	81	9	98	18	3	3	74	1.11
2578248--2578288	14	2.9	14	92	3	64	90	7	0	2	0.54
2578248--2578288	18	2.4	17	91	4	64	90	7	0	2	0.54
2578604--2578654	24	2.2	23	82	10	59	76	3	13	5	1.11
2578645--2578679	12	2.9	12	86	0	52	80	5	2	11	1.00
2579659--2579866	68	3.1	68	80	4	242	33	17	11	38	1.85
2580321--2580694	121	3.1	117	77	6	363	16	18	15	48	1.81
2580323--2580820	241	2.1	242	79	4	533	17	19	14	48	1.81
2580807--2580971	55	3.0	55	77	7	165	20	21	16	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113