genome.fa.s68.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  39  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11250476--11250619	3	46.7	3	84	13	177	28	2	4	65	1.23
11253065--11253091	2	13.5	2	100	0	54	48	0	0	51	1.00
11254827--11254900	36	2.1	35	80	14	80	74	6	4	14	1.18
11255890--11255931	3	14.0	3	100	0	84	66	0	0	33	0.92
11256405--11256431	3	9.0	3	100	0	54	66	0	0	33	0.92
11257369--11257421	27	2.0	27	82	10	65	50	3	9	35	1.53
11263648--11263737	6	14.7	6	69	9	56	26	17	8	46	1.78
11263641--11263688	24	2.0	24	91	0	78	29	20	8	41	1.81
11263723--11263785	32	2.0	32	87	0	90	42	11	11	34	1.76
11263853--11263914	32	1.9	32	83	0	79	33	22	14	29	1.94
11264235--11264539	104	2.9	103	86	1	421	38	14	14	32	1.87
11264542--11264585	22	2.0	21	86	4	61	31	25	13	29	1.94
11264443--11264685	126	1.9	126	84	3	319	35	16	15	32	1.91
11265026--11265082	11	4.9	11	72	19	53	17	5	1	75	1.07
11265121--11265162	8	5.4	8	77	5	50	83	0	2	14	0.75
11265110--11265181	31	2.1	34	85	12	96	77	4	1	16	0.99
11265088--11265158	12	6.4	11	71	14	56	70	2	2	23	1.14
11266539--11266602	6	10.7	6	75	12	51	78	1	4	15	1.00
11266539--11266596	19	3.2	19	76	13	68	77	1	3	17	0.99
11266536--11266609	24	3.1	24	79	11	89	77	1	6	14	1.05
11268222--11268272	17	2.9	18	77	13	61	33	11	19	35	1.88
11268222--11268300	35	2.3	35	80	4	88	35	12	16	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11268378--11268421	17	2.6	16	82	10	52	36	15	15	31	1.90
11268638--11268792	80	1.9	80	83	5	197	44	10	9	35	1.71
11268831--11268907	24	3.3	23	80	7	75	42	15	6	35	1.73
11268821--11268903	22	3.6	22	76	7	76	42	19	6	32	1.75
11269911--11269954	9	4.8	9	91	2	61	6	6	0	86	0.71
11270262--11270311	25	1.9	27	84	8	68	14	6	0	80	0.90
11274194--11274246	21	2.5	21	84	0	79	49	11	7	32	1.67
11274375--11274428	25	2.1	26	83	13	67	75	3	11	9	1.15
11274375--11274428	27	2.1	25	83	13	65	75	3	11	9	1.15
11275291--11275337	11	4.2	11	81	10	51	80	2	2	14	0.89
11275282--11275333	16	3.4	15	81	10	61	80	1	1	15	0.88
11275299--11275336	20	1.9	20	94	0	67	86	0	2	10	0.66
11276630--11276676	24	1.9	25	82	4	60	29	12	31	25	1.93
11277748--11277809	12	5.5	11	75	17	56	53	0	0	46	1.00
11277762--11277821	12	4.8	12	75	13	50	48	0	0	51	1.00
11277838--11277863	10	2.6	10	100	0	52	65	0	0	34	0.93
11278240--11278276	15	2.5	15	90	0	56	18	0	13	67	1.23
11278290--11278327	20	1.9	20	84	10	51	47	0	2	50	1.15
11282164--11282200	18	2.0	19	89	5	58	54	2	0	43	1.14
11292172--11292210	20	2.0	20	89	0	60	41	12	20	25	1.88
11299496--11299531	5	7.0	5	93	6	63	19	0	80	0	0.71
11299498--11299531	16	2.1	16	100	0	68	17	0	82	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11300712--11300757	18	2.6	18	86	6	67	54	4	0	41	1.20
11302097--11302135	18	2.0	18	85	14	51	56	0	2	41	1.13
11302459--11302511	3	18.0	3	92	3	54	66	9	0	24	1.21
11302589--11302670	36	2.3	36	81	8	96	46	2	0	51	1.14
11302593--11302655	15	4.1	15	76	14	58	41	3	0	55	1.16
11305507--11305558	26	2.0	25	81	3	59	53	11	3	30	1.54
11314429--11314484	27	2.0	29	86	10	80	48	7	5	39	1.54
11314499--11314561	15	4.3	15	74	20	53	44	1	0	53	1.10
11314486--11314555	31	2.3	31	80	9	72	47	1	0	51	1.09
11314496--11314562	14	4.5	14	74	17	64	43	1	0	55	1.09
11319674--11319706	16	2.1	16	88	11	50	6	12	12	69	1.35
11321826--11321856	3	10.3	3	100	0	62	35	0	0	64	0.94
11323485--11323517	17	1.9	17	88	11	50	69	0	3	27	1.03
11323490--11323533	17	2.6	16	82	10	52	72	0	2	25	0.96
11328670--11328694	13	1.9	13	100	0	50	88	0	0	12	0.53
11329083--11329119	14	2.6	14	91	0	65	13	21	0	64	1.27
11332652--11332707	21	2.5	23	80	5	71	60	1	0	37	1.07
11334192--11334227	2	18.0	2	100	0	72	50	0	0	50	1.00
11335108--11335142	17	2.1	17	94	0	61	42	0	0	57	0.99
11335148--11335213	26	2.6	25	81	15	89	50	1	1	46	1.20
11335171--11335238	16	3.9	17	79	15	68	48	0	1	50	1.10
11335129--11335257	45	2.9	44	74	14	106	51	1	0	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11335232--11335270	20	2.0	20	95	5	71	56	2	0	41	1.13
11335300--11335349	18	2.8	18	96	0	91	40	0	2	58	1.10
11345713--11345752	21	1.9	21	89	0	62	45	20	5	30	1.72
11346574--11346629	20	2.8	20	76	10	62	17	1	3	76	1.01
11346610--11346638	9	3.3	9	95	4	51	17	0	0	82	0.66
11347401--11347441	19	2.0	20	86	13	57	21	0	2	75	0.92
11355571--11355597	2	13.5	2	100	0	54	48	0	0	51	1.00
11356681--11356708	2	14.0	2	100	0	56	50	0	0	50	1.00
11358144--11358192	18	2.7	18	87	0	62	51	2	2	44	1.24
11365234--11365271	2	19.0	2	100	0	76	50	50	0	0	1.00
11370538--11370595	21	2.8	22	79	7	59	41	0	1	56	1.09
11370538--11370588	22	2.4	21	80	3	57	39	0	1	58	1.09
11371478--11371502	11	2.3	11	100	0	50	16	0	0	84	0.63
11376555--11376637	30	2.8	29	77	14	87	44	4	1	49	1.31
11378913--11378970	29	2.0	30	83	10	75	32	5	5	56	1.43
11382374--11382425	25	2.2	25	82	6	63	46	3	7	42	1.51
11386679--11386721	19	2.4	17	81	14	50	69	0	18	11	1.17
11392690--11392741	12	4.2	12	81	13	61	38	0	1	59	1.08
11396123--11396167	18	2.6	18	85	3	56	35	2	2	60	1.22
11396133--11396167	18	1.9	18	94	0	61	34	2	0	62	1.10
11396134--11396186	18	2.9	18	81	13	56	33	1	1	62	1.17
11401240--11401271	11	2.9	11	95	0	55	59	3	0	37	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11401527--11401577	22	2.3	23	80	12	63	43	0	1	54	1.11
11404226--11404269	22	2.0	22	95	0	79	31	11	13	43	1.80
11408340--11408398	31	1.9	31	89	0	91	32	16	13	37	1.88
11411618--11411741	61	2.0	61	93	0	212	45	13	9	30	1.76
11423099--11423143	18	2.4	19	81	3	56	46	0	0	53	1.00
11423122--11423175	29	1.9	27	81	7	63	50	1	0	48	1.11
11423172--11423228	22	2.7	20	79	15	60	61	1	1	35	1.17
11423936--11423990	20	2.6	22	80	11	60	43	1	0	54	1.10
11426334--11426365	13	2.3	15	89	10	50	75	0	0	25	0.81
11426496--11426526	2	15.5	2	100	0	62	51	0	0	48	1.00
11426946--11426970	2	12.5	2	100	0	50	52	0	0	48	1.00
11427078--11427104	2	13.5	2	100	0	54	51	0	0	48	1.00
11428219--11428248	6	4.8	6	95	4	51	50	0	16	33	1.46
11428822--11428864	2	21.5	2	100	0	86	51	0	48	0	1.00
11429189--11429232	23	1.9	23	86	9	63	47	2	4	45	1.35
11436790--11436899	56	1.9	57	85	5	150	33	9	6	50	1.59
11436850--11436942	24	3.8	24	72	12	82	34	5	6	53	1.49
11441638--11441670	2	16.5	2	93	0	57	48	0	0	51	1.00
11455518--11455564	22	2.2	21	85	11	60	48	6	8	36	1.59
11460612--11460639	6	4.7	6	100	0	56	50	0	35	14	1.43
11462610--11462681	35	2.1	35	92	5	119	43	2	18	36	1.64
11469108--11469200	44	2.1	44	84	4	116	32	15	20	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11485749--11485798	23	2.1	24	92	3	84	50	0	10	40	1.36
11485817--11485847	16	1.9	16	93	0	53	61	0	0	38	0.96
11489768--11489792	12	2.1	12	100	0	50	44	0	0	56	0.99
11492628--11492652	13	1.9	13	100	0	50	36	8	0	56	1.29
11494521--11494581	22	2.6	22	80	14	61	45	1	6	45	1.39
11495461--11495495	18	2.0	17	88	5	52	54	0	0	45	0.99
11495466--11495567	52	2.0	52	85	7	140	50	0	3	44	1.27
11496923--11496956	17	2.1	17	94	5	61	38	8	5	47	1.59
11497380--11497440	29	2.1	30	84	3	79	49	3	8	39	1.49
11500714--11500752	15	2.7	15	88	7	55	20	0	0	79	0.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113