genome.fa.s68.2.7.7.80.10.50.1000.84.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  84  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17580301--17581180	352	2.5	356	85	4	1154	37	14	11	36	1.83
17598545--17598597	11	5.1	11	90	9	76	24	0	5	69	1.09
17600718--17600786	34	2.0	34	82	0	84	31	15	20	31	1.94
17603216--17603315	50	2.0	51	92	2	166	24	19	11	46	1.81
17603307--17603376	19	3.7	19	76	3	61	44	38	0	17	1.49
17603343--17603391	7	7.6	7	73	17	52	44	38	0	16	1.48
17603343--17603391	19	2.6	19	93	0	80	44	38	0	16	1.48
17603371--17603438	30	2.2	31	86	2	93	42	35	4	17	1.69
17608068--17608187	62	2.0	61	86	1	168	22	18	19	40	1.92
17608130--17608402	43	6.4	42	76	5	208	26	17	17	39	1.91
17609377--17609416	17	2.4	17	91	0	62	17	2	5	75	1.10
17619788--17619836	19	2.6	19	87	3	64	4	16	0	79	0.88
17619870--17619911	21	2.0	22	90	4	68	45	2	2	50	1.27
17619869--17619911	22	2.0	22	90	9	70	44	2	2	51	1.27
17620285--17620355	20	3.6	20	81	9	60	49	0	4	46	1.21
17622760--17622857	46	2.1	46	86	3	135	28	6	7	58	1.49
17623478--17623526	4	12.2	4	79	16	57	75	2	0	22	0.90
17623478--17623526	25	2.0	23	92	7	80	75	2	0	22	0.90
17626895--17626994	47	2.2	45	82	7	112	24	11	7	58	1.57
17630647--17630673	13	2.1	13	100	0	54	55	14	0	29	1.40
17638094--17638230	19	7.1	19	74	14	111	32	2	6	57	1.39
17638095--17638230	29	4.7	28	75	14	98	33	2	6	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17638094--17638223	10	13.6	9	70	11	55	32	3	6	58	1.38
17638083--17638155	10	7.2	10	87	6	103	28	2	8	60	1.40
17638812--17638841	16	1.9	15	93	6	51	56	10	0	33	1.32
17639320--17639350	3	10.3	3	100	0	62	32	0	0	67	0.91
17643669--17643720	27	2.0	26	84	3	68	46	0	17	36	1.48
17647344--17647414	36	2.1	32	82	15	81	39	2	4	53	1.35
17648062--17648469	182	2.2	181	79	6	432	39	13	13	32	1.85
17648517--17648689	61	2.8	60	75	8	161	44	11	15	28	1.81
17649922--17649991	34	2.1	34	86	5	97	25	11	14	48	1.77
17650558--17650614	30	1.9	30	92	0	96	45	14	12	28	1.80
17651357--17651528	65	2.8	60	77	7	168	33	12	7	46	1.70
17653976--17654018	20	2.2	20	83	8	52	72	2	4	20	1.14
17654184--17654222	14	2.8	14	84	0	51	12	12	2	71	1.24
17654211--17654460	98	2.6	98	88	7	368	32	17	12	38	1.87
17654430--17654653	41	5.5	41	89	2	342	36	21	17	24	1.94
17654430--17654653	83	2.7	82	91	1	360	36	21	17	24	1.94
17654430--17654679	41	6.1	41	87	2	324	38	21	16	24	1.93
17654430--17654679	124	2.0	122	87	3	358	38	21	16	24	1.93
17655663--17655785	62	2.0	63	93	1	212	30	23	8	37	1.85
17656487--17656536	12	4.3	12	80	10	59	0	14	0	86	0.58
17656487--17656536	22	2.2	23	89	3	75	0	14	0	86	0.58
17656479--17656534	8	6.8	8	76	15	51	1	14	0	83	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17660465--17660701	118	2.0	121	86	4	336	37	12	7	42	1.72
17663141--17663183	20	2.2	20	83	8	52	74	0	4	20	1.00
17664083--17664124	16	2.6	17	88	7	61	14	9	2	73	1.18
17669123--17669246	5	22.8	5	71	20	56	69	0	7	22	1.18
17669131--17669173	22	1.9	22	85	4	59	72	2	4	20	1.14
17669121--17669202	27	2.8	29	78	14	96	71	1	7	19	1.16
17669662--17669703	20	2.1	20	86	0	57	30	7	11	50	1.66
17669702--17669786	17	4.8	18	75	5	75	36	11	17	34	1.86
17669794--17669855	26	2.3	27	81	8	74	40	19	12	27	1.88
17669854--17669902	23	2.2	23	85	3	64	44	18	8	28	1.78
17669997--17670056	22	2.8	21	82	2	75	36	23	8	31	1.84
17670051--17670226	69	2.6	67	83	7	205	43	15	7	32	1.75
17671484--17671570	8	12.0	7	80	13	81	12	16	0	71	1.15
17671484--17671570	39	2.2	40	87	8	124	12	16	0	71	1.15
17672390--17672431	17	2.6	16	82	17	52	54	7	23	14	1.64
17672509--17672552	23	2.0	22	86	4	61	50	9	6	34	1.61
17672709--17673193	246	2.0	246	86	0	684	30	15	18	35	1.91
17676197--17676229	14	2.5	14	90	9	52	27	0	3	69	1.03
17676223--17676250	8	3.5	8	100	0	56	14	0	0	85	0.59
17676210--17676251	20	2.1	20	82	8	50	21	0	0	78	0.75
17678209--17678242	17	2.0	17	94	0	59	32	17	8	41	1.80
17680355--17680397	23	1.9	22	95	4	77	32	6	13	46	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17681362--17681399	19	2.0	19	85	10	51	78	0	15	5	0.91
17682827--17682914	32	2.8	32	82	3	88	21	26	11	40	1.87
17683412--17683483	5	14.0	5	71	20	51	18	4	6	70	1.26
17685017--17685073	3	19.0	3	96	0	87	61	0	5	33	1.18
17685072--17685103	3	10.7	3	100	0	64	34	0	0	65	0.93
17688899--17689152	121	2.1	121	80	7	277	37	10	7	44	1.68
17689331--17689397	4	16.5	4	72	9	55	70	4	4	20	1.23
17690956--17691001	22	2.1	22	87	0	65	41	13	10	34	1.79
17690996--17691116	22	5.5	23	73	8	72	32	17	21	28	1.96
17691020--17691354	22	15.2	22	76	10	229	33	14	18	33	1.91
17692282--17692324	9	4.5	10	82	11	54	4	9	2	83	0.87
17692282--17692316	18	1.9	18	94	0	61	5	8	0	85	0.73
17695052--17695182	61	2.1	61	83	2	156	35	11	20	32	1.88
17696484--17696745	121	2.2	120	81	6	307	36	9	8	45	1.68
17696748--17696870	59	2.1	59	82	4	144	35	8	9	45	1.69
17698195--17698219	3	8.3	3	100	0	50	68	0	0	32	0.90
17699103--17699158	17	3.3	17	79	20	64	10	8	3	76	1.12
17699111--17699166	17	3.4	16	78	14	60	14	8	1	75	1.13
17701041--17701074	10	3.3	10	88	8	50	20	0	2	76	0.92
17702782--17702911	40	3.2	41	80	7	113	47	18	9	24	1.77
17702797--17702911	40	2.9	40	84	3	133	46	20	9	23	1.79
17703384--17703429	21	2.1	22	96	4	85	36	15	10	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17704574--17704598	13	1.9	13	100	0	50	20	0	0	80	0.72
17704942--17704996	27	2.0	27	82	0	65	9	12	1	76	1.10
17708548--17708580	17	1.9	17	93	0	57	21	0	6	72	1.05
17708781--17708833	24	2.1	25	82	6	63	35	11	9	43	1.73
17709024--17709066	19	2.3	20	84	11	56	6	6	2	83	0.88
17709528--17709570	22	1.9	23	90	4	70	0	32	0	67	0.91
17712581--17712613	10	3.2	10	95	4	57	87	0	9	3	0.63
17712581--17712613	11	3.1	11	91	4	50	87	0	9	3	0.63
17714021--17714155	45	3.1	45	79	4	141	34	8	12	44	1.72
17714282--17714464	17	10.4	17	69	5	69	27	14	15	42	1.86
17714276--17714460	72	2.6	70	79	3	208	28	14	15	42	1.85
17714344--17714483	53	2.6	53	75	2	129	28	12	14	45	1.81
17714490--17714525	17	2.1	18	89	5	56	41	8	13	36	1.75
17714630--17714660	16	1.9	16	93	0	53	45	12	0	41	1.42
17714778--17714828	18	2.8	18	75	3	57	35	13	13	37	1.85
17716156--17716211	17	3.2	16	77	20	51	8	1	7	82	0.92
17716168--17716218	25	2.0	25	85	7	68	13	1	5	78	1.02
17716316--17716363	21	2.3	20	82	6	69	35	4	8	52	1.51
17716334--17716395	29	2.2	28	82	8	72	33	4	9	51	1.56
17717250--17717290	20	2.2	19	91	8	66	36	14	4	43	1.67
17721682--17721713	16	2.0	16	100	0	64	18	6	25	50	1.70
17727937--17727984	2	24.0	2	100	0	96	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17729232--17729265	17	1.9	17	88	5	50	52	2	0	44	1.16
17730911--17731059	63	2.4	63	86	2	210	38	25	5	30	1.78
17730911--17731083	63	2.7	63	83	3	188	38	25	5	30	1.78
17730911--17731088	32	5.6	33	77	9	156	38	25	5	30	1.78
17735446--17735599	76	2.0	76	98	0	299	30	19	22	27	1.98
17736050--17736408	194	1.8	196	81	6	442	39	12	5	41	1.67
17736132--17736564	197	2.2	197	79	4	446	37	13	5	43	1.67
17736657--17736697	20	2.0	22	85	9	59	34	7	0	58	1.26
17743312--17743360	17	2.8	18	78	6	55	67	2	12	18	1.32
17744905--17744964	21	2.9	21	87	2	77	31	15	6	46	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113