genome.fa.s68.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  77  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16748068--16748110	22	2.0	22	86	9	61	53	6	0	39	1.28
16749074--16749131	19	2.8	20	79	10	64	56	3	0	39	1.16
16749075--16749139	16	3.8	18	75	17	68	55	3	0	41	1.15
16749124--16749163	19	2.1	19	86	9	55	47	0	0	52	1.00
16749206--16749244	21	1.9	21	84	5	53	61	0	2	35	1.10
16749252--16749292	19	2.2	19	86	0	55	48	4	0	46	1.23
16749690--16749736	7	6.0	8	82	12	62	34	0	2	63	1.06
16749699--16749736	15	2.5	15	91	0	67	31	0	2	65	1.06
16749772--16750510	180	4.2	178	77	10	644	43	10	7	39	1.67
16751141--16751184	19	2.2	20	84	11	56	36	2	4	56	1.32
16751487--16751521	18	1.9	18	88	0	52	51	2	2	42	1.31
16751602--16751662	29	2.0	30	87	6	88	47	3	0	49	1.18
16751672--16751766	23	4.3	23	78	11	83	53	0	0	46	1.00
16751648--16751748	14	6.6	16	70	24	51	51	0	0	47	1.07
16751662--16751767	45	2.4	46	82	7	121	53	0	0	45	1.06
16751659--16751760	11	8.3	12	67	21	52	53	0	0	45	1.06
16751752--16751810	21	2.7	21	84	5	73	45	5	3	45	1.42
16751898--16751947	20	2.6	18	79	17	55	50	8	2	40	1.43
16752608--16752692	32	2.5	35	83	12	115	47	1	0	51	1.08
16752601--16752682	17	4.8	17	75	11	62	46	1	1	51	1.16
16752634--16752691	18	3.5	16	77	13	64	46	0	0	53	1.00
16753275--16753310	19	1.9	18	94	5	63	41	2	5	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16753441--16753498	26	2.3	25	91	8	91	51	0	1	46	1.11
16754098--16754163	35	1.9	34	82	14	82	56	1	3	39	1.24
16754140--16754189	20	2.5	20	83	0	55	48	0	2	50	1.12
16754218--16754273	26	2.2	26	83	6	69	48	0	0	51	1.00
16754245--16754273	12	2.4	12	100	0	58	48	0	0	51	1.00
16755889--16755936	19	2.5	20	83	16	66	54	2	0	43	1.12
16755886--16755940	19	3.0	19	80	19	64	52	1	0	45	1.11
16756054--16756092	10	3.9	10	87	9	53	53	0	0	46	1.00
16756035--16756095	14	4.4	14	77	10	63	50	1	1	45	1.21
16756798--16756847	25	2.0	25	84	3	66	46	0	4	50	1.20
16757458--16757607	6	24.5	6	68	21	73	47	0	1	50	1.14
16757485--16757565	32	2.3	38	80	18	95	48	1	1	49	1.17
16757485--16757576	14	6.6	14	72	19	59	48	1	1	48	1.15
16757503--16757581	32	2.5	31	78	12	72	48	0	1	50	1.08
16757485--16757596	56	2.0	55	82	16	135	49	0	0	49	1.13
16757641--16757717	20	3.9	20	74	14	70	49	1	0	49	1.09
16758532--16758564	18	1.9	17	88	11	50	36	6	9	48	1.60
16757762--16760587	181	15.7	178	70	10	1077	41	10	8	40	1.69
16757758--16758801	180	5.8	180	75	7	642	42	10	7	39	1.68
16761890--16761919	11	2.7	11	94	0	51	53	0	0	46	1.00
16762186--16762826	182	3.6	178	75	7	548	42	9	7	39	1.66
16762857--16762922	22	2.9	22	84	6	69	51	0	3	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16763011--16763065	22	2.4	24	82	11	62	49	3	1	45	1.30
16763233--16764939	182	9.4	181	71	13	825	39	8	10	42	1.68
16763187--16765041	363	5.1	356	71	13	1016	40	8	10	41	1.69
16764148--16764184	17	2.1	18	85	14	51	37	2	10	48	1.52
16764372--16764858	177	2.7	179	78	6	482	40	8	11	40	1.71
16765213--16765250	19	2.0	19	89	0	58	42	0	0	57	0.98
16766416--16766454	12	3.3	12	85	3	53	48	2	0	48	1.15
16766417--16766474	24	2.4	23	81	13	64	50	3	0	46	1.18
16766403--16766484	19	4.2	19	68	20	53	51	2	0	46	1.14
16767377--16767597	120	1.8	120	88	5	340	34	13	8	43	1.74
16768868--16769639	182	4.3	179	77	7	684	40	8	9	41	1.68
16768923--16769639	363	2.0	362	82	4	863	40	8	10	41	1.69
16769423--16769868	229	1.9	229	79	3	495	40	8	9	41	1.69
16769653--16770093	180	2.4	180	80	6	473	40	7	8	43	1.63
16770213--16770258	20	2.3	20	100	0	92	45	10	0	43	1.39
16770634--16771664	181	5.8	180	77	4	836	40	7	10	41	1.68
16770650--16771664	362	2.8	355	79	5	1001	40	7	10	41	1.68
16771673--16771718	21	2.2	20	84	11	56	47	2	0	50	1.13
16771673--16771727	22	2.5	21	80	16	58	47	1	0	50	1.11
16771791--16771896	20	5.3	20	68	26	64	47	2	1	48	1.27
16771896--16771953	20	2.9	19	82	10	64	46	0	3	50	1.18
16772219--16772257	20	2.0	20	84	0	51	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16772435--16772513	18	4.2	20	69	26	64	54	0	0	45	0.99
16772436--16772509	9	8.2	9	69	25	50	55	0	0	44	0.99
16772444--16772470	13	2.1	13	100	0	54	55	0	0	44	0.99
16772573--16772624	14	3.6	16	78	19	60	55	0	0	44	0.99
16773113--16773194	10	8.5	10	70	20	50	46	1	2	50	1.22
16773158--16773231	26	2.9	25	76	13	62	43	0	1	55	1.08
16773323--16773400	32	2.4	32	79	8	88	48	1	1	48	1.17
16773823--16773861	19	2.1	19	85	0	51	51	0	0	48	1.00
16774950--16775044	22	4.4	22	75	19	78	53	0	1	45	1.07
16774950--16775001	17	3.1	18	78	13	58	57	0	0	42	0.98
16774984--16775062	21	3.7	21	81	11	72	53	0	1	45	1.08
16774961--16775062	24	4.4	24	74	18	74	52	0	0	46	1.07
16774950--16775068	22	5.4	20	73	20	73	54	0	1	43	1.10
16775079--16775150	14	5.9	13	68	23	50	40	4	0	55	1.19
16775076--16775149	35	2.1	35	82	9	89	39	4	0	56	1.18
16775524--16775566	23	2.0	23	86	9	63	46	2	6	44	1.43
16776035--16776096	20	2.9	21	83	9	81	46	1	0	51	1.10
16776039--16776210	19	8.8	20	67	16	69	44	2	2	51	1.27
16776237--16776294	20	2.7	22	76	17	59	48	5	0	46	1.24
16776726--16776802	28	2.8	28	73	11	77	49	1	0	49	1.09
16776733--16776815	22	3.7	22	80	17	91	51	1	0	46	1.08
16776734--16776806	12	6.1	13	72	18	68	50	1	0	47	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16776941--16776996	27	2.1	27	84	15	73	39	0	3	57	1.16
16777199--16777267	11	5.7	12	75	21	56	47	0	1	50	1.09
16778025--16778087	31	2.0	33	84	12	87	53	1	1	42	1.19
16778307--16778354	19	2.5	18	76	23	53	47	4	4	43	1.41
16778304--16778356	21	2.5	21	79	14	56	49	3	3	43	1.38
16778314--16778367	24	2.3	25	81	15	71	44	3	3	48	1.38
16778714--16778772	19	3.1	20	74	18	63	45	3	0	50	1.18
16779226--16779271	9	4.9	9	80	19	58	56	0	0	43	0.99
16779220--16779283	20	2.8	24	75	22	75	54	1	0	43	1.09
16779361--16779401	15	2.6	16	75	21	50	46	0	2	51	1.14
16779890--16779976	31	2.8	30	79	17	90	39	2	2	56	1.25
16780014--16780057	20	2.1	21	88	12	65	45	0	0	54	0.99
16780022--16780093	30	2.4	29	78	13	76	48	1	1	48	1.18
16779924--16780093	88	1.9	88	79	13	190	47	2	0	48	1.21
16780118--16780151	18	1.9	17	88	5	50	41	2	5	50	1.42
16780122--16780160	18	2.2	18	85	0	51	46	2	5	46	1.38
16780650--16780697	21	2.2	22	88	3	71	56	0	2	41	1.11
16781221--16781297	23	3.5	22	81	16	90	48	2	2	46	1.29
16782745--16782802	17	3.4	17	81	9	57	46	3	0	50	1.18
16782745--16782794	23	2.2	23	82	13	59	48	4	0	48	1.20
16783473--16783522	10	4.9	10	80	9	57	56	0	2	42	1.11
16783651--16783714	24	2.8	24	84	13	73	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16783814--16783871	13	4.5	13	70	20	50	50	1	0	48	1.11
16783802--16783870	18	3.7	18	76	14	68	49	2	0	47	1.16
16785176--16785721	279	2.0	279	91	0	894	28	13	12	45	1.80
16786256--16786285	15	2.1	14	93	6	51	56	0	0	43	0.99
16786255--16786303	16	3.1	16	82	11	57	51	2	0	46	1.12
16786801--16786848	24	2.0	24	83	4	60	54	0	2	43	1.12
16787202--16787246	24	1.9	23	86	4	63	42	2	2	53	1.25
16787346--16787400	17	3.2	17	80	12	60	54	1	0	43	1.10
16787354--16787407	22	2.5	22	82	8	58	55	1	0	42	1.10
16788105--16788134	14	2.1	14	93	0	51	50	0	3	46	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113