genome.fa.s68.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  7  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1813248--1813288	12	3.4	12	83	16	50	65	0	0	34	0.93
1815648--1815722	34	2.2	34	92	0	123	14	20	25	40	1.90
1819147--1819179	2	17.0	2	87	6	50	54	0	0	45	0.99
1819308--1819334	2	13.5	2	100	0	54	0	0	48	51	1.00
1820688--1820879	106	1.8	106	83	6	255	38	8	10	42	1.69
1822498--1822720	82	2.7	83	81	4	245	36	14	14	33	1.88
1827940--1827998	21	2.9	21	82	9	70	47	3	22	27	1.67
1828435--1828485	21	2.5	20	83	6	57	66	5	3	23	1.30
1830359--1830401	23	2.0	22	86	13	63	34	4	4	55	1.41
1830469--1830515	16	2.9	16	75	12	51	72	4	0	23	1.02
1831420--1831462	2	21.5	2	85	0	50	51	4	2	41	1.35
1834422--1834449	2	14.0	2	100	0	56	50	0	0	50	1.00
1837332--1837359	3	9.3	3	100	0	56	67	0	32	0	0.91
1841677--1841704	6	4.7	6	100	0	56	0	14	35	50	1.43
1845417--1845456	19	2.1	19	85	4	53	77	7	12	2	1.07
1852493--1852588	49	2.0	48	83	8	122	47	6	5	40	1.51
1852611--1852681	35	2.1	35	89	7	110	45	2	2	49	1.31
1853318--1853343	2	13.0	2	100	0	52	50	0	0	50	1.00
1857934--1857966	16	2.1	16	94	0	57	54	12	3	30	1.52
1859517--1859585	33	2.1	33	84	10	88	56	1	0	42	1.08
1860125--1860157	17	2.0	17	88	5	50	27	0	0	72	0.85
1861033--1861080	25	1.9	25	83	8	62	50	2	4	43	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1861025--1861123	38	2.6	38	79	3	110	48	1	2	48	1.19
1861094--1861128	18	2.0	17	94	5	61	57	0	0	42	0.99
1861071--1861136	20	3.4	19	78	15	64	50	0	0	50	1.00
1865771--1865825	28	2.0	27	89	10	85	36	0	7	56	1.27
1868399--1868437	13	2.9	13	80	3	51	25	0	2	71	0.98
1868615--1868817	101	2.0	101	97	0	379	22	23	13	41	1.88
1872896--1872924	11	2.6	11	100	0	58	41	10	0	48	1.37
1878189--1878315	57	2.2	57	94	0	218	29	34	7	27	1.85
1880900--1880965	33	2.0	33	96	0	123	34	6	13	45	1.68
1887040--1887243	102	2.0	102	99	0	399	37	23	9	29	1.87
1891261--1891316	12	4.8	12	78	14	64	66	0	0	33	0.92
1891256--1891311	17	3.3	17	73	14	53	62	0	0	37	0.95
1896598--1896638	20	2.0	20	85	9	55	26	2	0	70	0.99
1897141--1897167	2	13.5	2	100	0	54	0	48	0	51	1.00
1904080--1904116	2	19.0	2	94	5	67	51	0	0	48	1.00
1904080--1904113	17	2.0	17	100	0	68	52	0	0	47	1.00
1918909--1918993	32	2.6	33	80	12	95	48	3	1	47	1.26
1919140--1919230	6	15.5	6	73	15	66	51	0	0	48	1.00
1919144--1919185	11	3.9	11	82	11	52	45	0	0	54	0.99
1919140--1919226	38	2.3	39	82	11	117	51	0	0	48	1.00
1920125--1920164	20	2.0	21	90	5	64	30	0	15	55	1.41
1921254--1921295	2	21.5	2	95	4	77	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1929943--1929979	2	18.5	2	100	0	74	48	0	0	51	1.00
1929979--1930009	1	31.0	1	93	0	53	3	0	0	96	0.21
1930074--1930465	195	2.0	195	97	0	748	23	20	19	36	1.95
1937258--1937302	21	2.1	21	87	0	63	42	0	6	51	1.28
1940273--1940302	2	15.5	2	93	6	53	53	0	0	46	1.00
1959373--1959397	9	2.8	9	100	0	50	92	0	0	8	0.40
1969527--1969551	12	2.1	12	100	0	50	48	40	0	12	1.40
1970739--1971205	233	2.0	233	99	0	925	32	16	17	33	1.93
1972551--1972620	36	1.9	36	85	5	97	34	2	4	58	1.32
1973389--1973431	2	21.5	2	100	0	86	51	0	0	48	1.00
1974027--1974070	24	2.0	23	82	13	56	45	2	0	52	1.13
1974099--1974168	32	2.2	31	87	7	97	41	0	0	58	0.98
1974601--1974636	18	2.1	17	90	10	56	58	0	0	41	0.98
1975302--1975383	29	2.9	29	92	3	132	47	0	0	52	1.00
1975297--1975391	29	3.3	27	81	12	93	49	0	0	50	1.00
1979522--1979568	22	2.1	22	100	0	94	40	8	4	46	1.54
1980856--1980894	10	3.8	10	86	3	51	41	0	2	56	1.13
1980856--1980894	20	1.9	21	89	5	62	41	0	2	56	1.13
1985585--1985616	2	16.0	2	100	0	64	50	0	0	50	1.00
1986774--1986803	15	2.0	15	93	0	51	36	0	0	63	0.95
1986831--1986859	2	14.5	2	100	0	58	51	0	0	48	1.00
1986859--1986883	2	12.5	2	100	0	50	52	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1987036--1987070	2	17.5	2	100	0	70	51	0	0	48	1.00
1992628--1992680	18	2.9	19	78	10	58	52	0	0	47	1.00
1995138--1995190	23	2.3	23	83	3	61	58	1	5	33	1.32
1997082--1997129	18	2.6	18	83	6	60	77	4	4	14	1.08
1997571--1997621	11	4.7	11	75	4	50	52	0	0	47	1.00
2007047--2007108	20	3.1	21	81	6	76	33	0	0	66	0.92
2007041--2007111	28	2.4	29	81	4	81	38	0	0	61	0.96
2007612--2007641	13	2.3	13	94	0	51	36	6	3	53	1.44
2009976--2010042	25	2.7	25	81	6	66	53	2	0	43	1.16
2009999--2010045	25	1.9	25	95	4	87	51	0	0	48	1.00
2010591--2010902	173	1.8	173	85	4	450	19	31	30	18	1.96
2011494--2011535	18	2.4	18	92	4	68	30	0	0	69	0.89
2011641--2011707	32	2.1	33	83	13	86	53	4	0	41	1.21
2022932--2022965	16	2.0	18	88	11	54	38	0	5	55	1.24
2022932--2022966	17	2.0	18	88	5	54	40	0	5	54	1.24
2023125--2023161	19	1.9	19	88	0	56	56	5	0	37	1.22
2032427--2032454	2	14.0	2	100	0	56	50	0	0	50	1.00
2032956--2032980	12	2.1	12	100	0	50	24	8	28	40	1.83
2043657--2043682	2	13.0	2	100	0	52	0	50	0	50	1.00
2047034--2047088	29	2.0	28	89	7	85	41	0	0	58	0.98
2047053--2047134	21	3.5	21	69	26	58	46	1	1	51	1.16
2047054--2047135	27	3.3	24	71	18	69	46	1	1	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2047052--2047150	51	2.0	49	81	15	114	47	3	1	48	1.24
2051420--2051446	1	27.0	1	100	0	54	100	0	0	0	0.00
2058018--2058047	13	2.4	12	94	5	51	0	13	0	86	0.57
2062006--2062043	18	2.1	19	90	5	60	7	47	23	21	1.77
2069308--2069355	22	2.2	22	85	7	62	60	0	0	39	0.97
2070950--2070984	16	2.1	18	89	10	56	45	0	0	54	0.99
2070965--2071005	19	2.1	20	86	4	57	56	0	0	43	0.99
2113761--2113790	13	2.2	14	94	5	53	60	0	0	40	0.97
2122758--2122798	16	2.5	16	96	4	73	39	14	29	17	1.89
2130838--2130900	16	3.9	16	73	21	60	34	0	0	65	0.93
2130919--2130953	17	2.1	17	88	0	52	40	5	0	54	1.24
2130931--2131008	25	3.1	25	73	17	72	50	0	0	50	1.00
2130933--2131010	23	3.2	23	70	18	59	50	0	0	50	1.00
2131598--2131643	24	1.9	24	83	16	60	54	0	0	45	0.99
2139798--2139864	29	2.4	29	82	7	77	44	0	0	55	0.99
2139891--2139917	10	2.7	10	100	0	54	51	0	0	48	1.00
2145778--2145881	29	3.6	29	85	3	120	54	1	3	39	1.30
2145769--2145889	29	4.2	28	79	10	118	56	1	4	37	1.31
2152946--2152989	22	2.0	24	86	13	67	45	0	0	54	0.99
2158757--2158790	2	17.0	2	93	0	50	44	0	5	50	1.26
2161367--2161409	17	2.5	17	80	0	50	51	0	2	46	1.13
2161384--2161487	29	3.5	30	79	7	106	46	0	8	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2166214--2166263	18	3.0	17	85	8	59	54	6	2	38	1.37
2176835--2176859	2	12.5	2	100	0	50	52	0	0	48	1.00
2177376--2177429	26	2.0	27	96	3	101	33	0	0	66	0.92
2177828--2177864	8	4.6	8	86	0	56	43	0	0	56	0.99
2177828--2177883	16	3.6	16	80	9	62	46	0	0	53	1.00
2178186--2178222	18	2.1	18	89	0	56	62	0	0	37	0.96
2198653--2198730	23	3.4	23	94	0	138	14	8	19	57	1.63
2200038--2200071	13	2.4	15	90	9	54	67	11	8	11	1.42
2208449--2208473	13	1.9	13	100	0	50	72	8	8	12	1.29
2230873--2230931	21	2.8	21	82	12	68	69	1	1	27	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113