genome.fa.s68.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  68  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15833200--15833370	64	2.7	64	75	8	177	16	18	12	52	1.75
15833228--15833322	32	3.0	32	75	6	95	18	17	11	51	1.75
15833868--15833913	21	2.1	23	88	8	69	17	4	10	67	1.37
15833935--15833982	23	2.1	23	84	7	62	22	2	2	72	1.05
15833933--15834042	4	27.0	4	69	17	57	20	3	2	72	1.12
15833943--15834037	29	3.4	28	72	18	67	18	3	2	75	1.03
15833943--15834034	7	12.9	7	70	19	57	18	3	2	76	1.03
15834126--15834167	20	2.1	21	86	8	61	26	9	11	52	1.68
15835643--15835675	17	1.9	17	100	0	66	60	0	0	39	0.97
15835866--15835936	37	1.9	37	85	0	97	46	9	8	35	1.67
15841101--15841127	8	3.4	8	100	0	54	77	0	11	11	0.99
15851160--15851198	2	20.0	2	94	5	71	51	0	0	48	1.00
15855049--15855109	31	2.0	31	87	6	88	45	18	1	34	1.59
15856830--15856878	25	2.0	25	87	0	71	32	20	10	36	1.86
15859598--15860674	355	3.0	354	86	3	1422	37	12	12	38	1.81
15866169--15866200	9	3.7	9	91	8	57	21	9	0	68	1.17
15866890--15867184	101	2.9	101	82	4	362	43	10	8	37	1.69
15874820--15875002	84	2.2	84	81	5	201	31	16	18	33	1.93
15875873--15875945	26	2.8	26	91	0	119	16	8	35	39	1.78
15876180--15876501	101	3.2	100	81	9	359	43	9	8	38	1.67
15876533--15876575	21	2.0	21	100	0	86	37	18	18	25	1.94
15882676--15882721	2	23.0	2	95	0	83	47	0	2	50	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15887496--15887525	3	10.0	3	100	0	60	33	0	0	66	0.92
15904233--15904258	9	2.9	9	100	0	52	23	7	11	57	1.59
15904439--15904493	11	4.7	11	78	10	56	18	3	3	74	1.11
15906093--15906127	17	2.0	18	88	5	54	77	0	5	17	0.96
15916223--15916275	6	8.8	6	85	0	61	50	13	35	0	1.41
15918174--15918200	3	9.0	3	100	0	54	33	33	0	33	1.58
15922079--15922111	3	11.0	3	100	0	66	66	0	0	33	0.92
15923751--15923779	13	2.2	13	100	0	58	37	13	27	20	1.91
15932138--15932205	34	2.0	33	83	8	84	20	19	13	47	1.82
15937022--15937113	47	2.0	47	82	4	114	29	10	7	52	1.64
15937729--15937780	4	13.2	4	77	18	56	75	1	0	23	0.91
15938686--15938732	19	2.5	19	82	6	60	29	8	2	59	1.39
15940368--15940420	17	3.3	15	82	12	52	20	3	1	73	1.08
15948052--15948238	71	2.7	69	80	8	200	34	11	6	47	1.65
15948191--15948308	62	1.9	61	88	8	177	35	11	4	49	1.58
15948462--15948530	23	3.0	23	89	0	102	68	1	1	28	1.07
15948462--15948533	6	12.3	6	85	5	103	68	1	1	29	1.07
15948551--15948592	21	2.0	22	86	9	61	73	0	0	26	0.83
15949192--15949225	17	1.9	17	88	5	50	0	17	11	70	1.16
15949418--15949534	20	5.7	21	80	11	111	70	0	5	23	1.13
15949427--15949530	11	10.1	10	68	22	56	68	0	4	25	1.16
15949533--15949566	5	6.4	5	87	12	50	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15949425--15949550	64	2.0	63	83	10	159	67	0	4	26	1.16
15949771--15949898	45	2.9	44	80	2	148	42	17	14	25	1.87
15949771--15949903	44	3.0	44	82	1	149	42	16	15	25	1.87
15949809--15949991	45	4.2	45	73	7	135	46	17	10	25	1.80
15949844--15950006	87	1.9	87	82	7	206	46	18	9	25	1.80
15950036--15950119	41	2.1	41	84	2	107	40	21	14	23	1.90
15962046--15962097	23	2.3	22	93	6	95	71	0	13	15	1.15
15962094--15962149	6	9.3	6	88	0	85	66	3	1	28	1.19
15962907--15963037	3	42.3	3	69	18	65	65	2	3	28	1.22
15962920--15963011	24	3.9	24	82	7	125	63	2	4	30	1.26
15962905--15963011	22	4.8	22	80	13	121	65	1	4	28	1.23
15962907--15963003	46	2.1	47	84	9	137	65	2	4	27	1.21
15962905--15963037	22	6.0	22	77	14	114	65	2	4	27	1.24
15963037--15963072	10	3.3	11	88	11	56	66	0	0	33	0.92
15964293--15964332	21	2.0	20	90	5	62	57	15	7	20	1.61
15966861--15966892	16	2.0	16	100	0	64	56	0	0	43	0.99
15967176--15967222	24	2.0	24	86	0	67	40	4	17	38	1.69
15967176--15967234	24	2.5	24	82	0	64	37	6	16	38	1.76
15968154--15968200	15	3.1	15	75	9	51	23	2	0	74	0.93
15970851--15970891	2	20.5	2	89	0	55	43	0	4	51	1.23
15971786--15971821	18	1.9	19	88	5	56	52	0	2	44	1.15
15971925--15971984	32	1.9	31	89	3	93	53	8	1	36	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15971858--15971981	64	2.0	63	80	7	144	55	9	2	32	1.45
15972593--15972626	17	1.9	17	88	5	50	55	8	5	29	1.54
15975363--15975394	5	6.4	5	92	0	55	0	18	0	81	0.70
15977653--15977686	2	17.0	2	100	0	68	50	0	0	50	1.00
15979148--15979190	22	1.9	23	85	4	61	13	23	4	58	1.55
15987181--15987291	11	9.1	11	72	17	60	17	3	1	77	1.00
15987202--15987291	6	14.8	6	75	11	85	18	2	2	76	0.99
15987202--15987291	13	7.4	12	74	10	85	18	2	2	76	0.99
15987429--15987464	14	2.5	15	90	4	56	13	2	5	77	1.05
15988293--15988360	11	6.7	10	77	14	52	13	4	2	79	1.00
15988293--15988360	5	13.4	5	73	17	52	13	4	2	79	1.00
15988293--15988343	17	3.2	17	72	10	54	11	5	1	80	0.97
15988304--15988370	17	3.9	18	73	26	58	13	4	2	79	1.01
15988300--15988360	13	4.5	13	74	15	52	13	3	3	80	0.96
15988385--15989014	59	10.7	59	83	6	737	44	7	13	34	1.72
15988385--15989014	176	3.6	175	87	5	855	44	7	13	34	1.72
15988947--15988986	16	2.4	17	83	8	55	50	5	0	45	1.23
15992630--15992667	15	2.5	15	84	16	51	55	5	34	5	1.45
15996619--15996669	8	6.8	8	84	13	72	80	0	7	11	0.90
15997682--15998062	42	9.1	41	88	2	501	23	16	23	36	1.94
15997682--15998062	124	3.0	124	86	3	505	23	16	23	36	1.94
15998072--15998114	12	3.2	13	83	12	52	83	4	2	9	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15998275--15998344	6	12.6	5	77	19	52	17	1	1	80	0.87
15998284--15998348	6	11.0	6	82	12	82	16	1	1	80	0.88
15999436--15999492	11	5.5	10	83	8	53	12	5	1	80	0.95
15999443--15999517	28	2.7	29	78	15	79	13	5	2	78	1.02
15999447--15999528	25	3.1	24	74	16	58	12	7	2	78	1.06
15999549--16000109	59	9.6	58	84	8	683	43	8	13	34	1.74
15999541--16000109	176	3.2	175	88	6	832	43	8	13	34	1.74
16000139--16000171	14	2.4	14	94	0	57	12	3	0	84	0.72
16000769--16000814	24	1.9	24	82	8	58	58	0	2	39	1.10
16000908--16001046	55	2.5	55	80	4	165	45	13	11	29	1.79
16007166--16008286	515	2.2	507	87	4	1331	36	14	15	34	1.87
16011973--16012025	12	4.3	12	80	4	61	45	30	7	16	1.75
16011958--16012009	25	2.1	25	92	0	86	46	28	7	17	1.75
16012602--16012948	184	1.9	187	86	4	497	40	12	13	32	1.83
16012813--16013072	125	2.1	124	83	2	324	38	15	14	32	1.87
16012878--16013809	180	5.1	181	73	12	695	40	12	13	34	1.82
16012602--16013183	311	1.9	308	88	3	884	39	13	14	32	1.85
16012629--16013266	311	2.0	309	85	5	865	40	13	13	32	1.84
16013098--16013825	180	4.0	175	77	7	697	40	11	13	34	1.81
16012910--16013870	364	2.6	364	87	3	1376	39	11	14	34	1.82
16021506--16021615	34	3.2	33	76	10	114	38	18	13	30	1.89
16021553--16021636	34	2.5	34	80	0	96	38	20	14	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16022715--16022852	66	2.0	68	88	5	208	42	14	9	34	1.78
16022737--16022867	66	2.0	66	83	0	163	45	11	9	33	1.74
16024972--16025029	27	2.1	28	83	6	73	18	18	1	60	1.45
16026422--16026459	3	12.7	3	100	0	76	68	0	0	31	0.90
16026676--16026709	18	1.9	17	88	5	50	35	14	0	50	1.44
16027553--16027597	21	2.1	21	84	8	56	68	11	0	20	1.19
16032181--16032213	12	2.8	12	86	13	50	84	9	6	0	0.76
16035158--16035198	20	2.1	19	86	4	55	63	2	2	31	1.20
16035157--16035199	19	2.3	19	80	12	52	60	2	2	34	1.22
16039505--16039579	14	5.6	14	74	14	61	77	1	2	18	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113