genome.fa.s68.2.7.7.80.10.50.1000.29.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  29  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9635201--9635281	35	2.2	38	89	8	125	12	11	0	76	1.02
9635344--9635381	17	2.3	17	90	4	60	63	0	2	34	1.09
9635617--9635657	21	1.9	21	85	14	57	21	9	0	68	1.18
9635617--9635658	22	1.9	23	85	9	61	21	9	0	69	1.17
9639491--9639550	30	2.0	31	87	9	88	51	0	0	48	1.00
9640226--9640251	9	2.9	9	100	0	52	69	0	0	30	0.89
9640917--9641232	156	2.0	157	93	1	546	45	10	6	37	1.64
9641712--9641757	14	3.4	14	79	11	51	54	4	2	39	1.32
9645162--9645191	16	1.9	16	93	6	53	63	10	0	26	1.26
9645593--9645636	23	2.0	22	86	4	61	47	0	0	52	1.00
9645598--9645683	23	3.9	22	72	14	61	40	1	0	58	1.06
9645623--9645689	22	3.0	22	79	12	75	37	1	0	61	1.05
9646954--9647036	30	2.9	30	82	8	93	24	0	28	46	1.52
9647027--9647097	17	4.2	17	77	10	65	16	0	30	52	1.45
9647044--9647114	33	2.2	33	84	5	90	21	1	26	50	1.57
9648119--9648159	9	4.6	9	82	17	50	0	7	2	90	0.54
9648131--9648159	8	3.8	8	95	4	51	0	6	0	93	0.36
9648119--9648158	21	1.9	21	89	0	62	0	7	2	90	0.55
9648119--9648159	18	2.3	18	88	12	66	0	7	2	90	0.54
9648648--9648688	22	1.9	21	95	5	73	48	0	0	51	1.00
9648960--9649033	22	3.3	22	77	7	76	37	18	17	25	1.93
9649070--9649379	87	3.6	87	83	3	390	38	21	20	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9649958--9650225	33	8.2	33	82	6	296	34	14	20	30	1.92
9649958--9650225	65	4.1	66	80	5	296	34	14	20	30	1.92
9655253--9655721	161	2.9	164	94	3	831	40	16	14	28	1.88
9655708--9655803	11	7.8	13	69	19	55	80	6	1	12	0.95
9655737--9655777	21	2.0	21	95	4	75	82	4	0	12	0.81
9655727--9655810	34	2.5	33	80	14	109	83	4	0	11	0.79
9655756--9655790	13	2.7	13	100	0	70	77	5	0	17	0.96
9655782--9655810	1	29.0	1	100	0	58	100	0	0	0	0.00
9657096--9657244	1	149.0	1	78	0	136	4	0	8	87	0.64
9657078--9657243	42	4.2	37	83	12	183	4	0	8	86	0.69
9657069--9657244	41	4.4	40	79	13	184	5	0	8	86	0.70
9657251--9657869	41	15.1	41	89	4	905	36	24	16	23	1.94
9657251--9657869	83	7.6	82	93	3	939	36	24	16	23	1.94
9659083--9659120	10	3.7	10	92	3	58	0	5	2	92	0.47
9659083--9659122	21	1.9	21	94	0	71	0	7	2	90	0.55
9659083--9659121	1	39.0	1	84	0	51	0	5	2	92	0.46
9662834--9663304	161	2.9	165	93	3	828	40	16	14	28	1.87
9663337--9663402	1	66.0	1	90	0	69	89	3	0	7	0.58
9663326--9663378	12	4.7	12	81	13	76	81	5	0	13	0.86
9663283--9663401	48	2.5	48	78	0	130	81	5	2	10	0.95
9663326--9663399	33	2.2	33	90	0	112	86	4	0	9	0.69
9664391--9664419	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9665099--9665319	59	3.7	60	85	4	313	33	14	7	44	1.74
9665101--9665319	119	1.8	118	90	2	350	33	14	6	44	1.72
9666322--9666365	18	2.4	19	84	3	63	68	4	9	18	1.34
9666422--9666460	3	12.7	3	84	15	53	66	0	0	33	0.92
9666414--9666448	16	2.2	16	89	0	52	74	0	0	25	0.82
9666421--9666499	10	7.6	10	75	13	63	63	3	0	32	1.12
9666732--9666765	9	3.8	9	92	0	59	0	0	11	88	0.52
9666774--9667187	84	5.0	83	86	8	567	37	22	17	22	1.94
9666774--9667187	41	10.0	42	87	7	557	37	22	17	22	1.94
9668397--9668457	32	1.9	32	86	6	88	8	16	0	75	1.03
9672252--9672471	59	3.7	59	87	4	327	34	14	7	44	1.73
9672252--9672471	119	1.9	118	92	2	370	34	14	7	44	1.73
9673041--9673114	31	2.4	31	86	4	96	24	18	28	28	1.98
9673123--9673176	25	2.2	25	83	6	65	37	18	5	38	1.74
9673580--9673614	3	11.7	3	88	11	54	65	0	0	34	0.93
9678543--9678583	20	2.0	21	95	4	75	46	0	0	53	1.00
9680317--9680695	198	1.9	195	82	4	476	42	8	5	43	1.58
9681007--9681074	28	2.4	27	76	9	66	25	2	1	70	1.09
9681281--9681330	24	2.0	24	88	7	73	18	6	2	74	1.12
9681277--9681310	18	1.9	18	88	5	52	14	2	5	76	1.09
9681636--9681694	23	2.4	23	75	16	57	50	1	0	47	1.11
9684323--9684348	3	8.7	3	100	0	52	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9686574--9686769	98	2.0	97	92	1	329	38	9	9	42	1.71
9688701--9688759	12	5.0	13	79	20	60	32	0	0	67	0.91
9688753--9688801	21	2.5	20	90	9	66	46	0	0	53	1.00
9688753--9688801	20	2.5	20	90	9	75	46	0	0	53	1.00
9689471--9689545	36	2.1	37	85	7	100	46	8	4	41	1.52
9690026--9690060	17	2.1	16	89	5	52	68	2	25	2	1.17
9692340--9692388	16	2.7	19	78	15	59	32	0	6	61	1.21
9692848--9692901	25	2.2	25	83	6	65	35	3	20	40	1.70
9693465--9693589	59	2.1	59	85	4	173	48	8	12	30	1.72
9697414--9697453	18	2.4	17	87	8	55	82	0	12	5	0.82
9697427--9697486	8	7.1	9	80	19	60	81	0	10	8	0.87
9697414--9697486	17	4.6	16	75	14	62	80	0	10	8	0.89
9698722--9699294	40	14.0	40	89	8	813	22	17	21	38	1.94
9698722--9699294	123	4.7	121	88	8	842	22	17	21	38	1.94
9698722--9699294	82	7.0	82	95	3	937	22	17	21	38	1.94
9699302--9699415	15	7.4	15	80	7	131	85	11	0	2	0.68
9699301--9699415	8	13.8	8	84	13	126	86	11	0	2	0.68
9699301--9699407	1	107.0	1	73	0	88	86	10	0	2	0.66
9699614--9699662	16	2.7	19	78	15	59	32	0	6	61	1.21
9699689--9699794	53	2.0	53	80	10	119	26	4	3	65	1.30
9701392--9701495	16	6.6	16	67	22	51	62	6	2	27	1.35
9701720--9702496	41	19.0	40	86	8	986	38	20	17	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9701720--9702496	82	9.5	82	91	4	1225	38	20	17	22	1.93
9705618--9706150	59	8.9	59	80	10	570	33	12	7	46	1.71
9705631--9706151	120	4.4	118	88	7	668	33	13	7	45	1.71
9706052--9706141	27	3.2	27	64	20	67	38	13	5	42	1.67
9705631--9706179	119	4.6	118	87	6	609	33	12	7	46	1.70
9706676--9706723	19	2.5	19	82	0	60	22	27	29	20	1.99
9706696--9706766	31	2.3	31	83	11	92	26	23	22	26	2.00
9707223--9707266	18	2.4	19	81	11	56	61	6	0	31	1.22
9708469--9708534	23	3.0	23	77	22	79	43	1	3	51	1.26
9709528--9709552	4	6.2	4	100	0	50	24	0	0	76	0.80
9709618--9709685	6	10.7	6	77	17	66	8	13	0	77	0.98
9709608--9709691	37	2.2	39	89	10	131	11	10	0	77	1.00
9709754--9709791	17	2.3	17	90	4	60	63	0	2	34	1.09
9710027--9710067	21	1.9	21	85	14	57	21	9	0	68	1.18
9710027--9710068	22	1.9	23	85	9	61	21	9	0	69	1.17
9711384--9711414	5	6.2	5	92	0	53	80	0	19	0	0.71
9713016--9713065	13	4.0	13	75	14	52	22	2	2	74	1.03
9713275--9713320	16	2.9	16	83	0	56	15	2	6	76	1.09
9713725--9714039	155	2.0	156	95	0	569	45	11	6	37	1.65
9714518--9714563	14	3.4	14	79	11	51	54	4	2	39	1.32
9715206--9715252	2	23.5	2	100	0	94	0	48	0	51	1.00
9716116--9716166	18	2.9	16	78	16	57	27	3	1	66	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9717086--9717118	14	2.4	14	90	5	50	15	6	3	75	1.11
9719123--9719152	4	7.5	4	92	0	51	23	3	0	73	0.98
9719486--9719524	19	2.0	19	90	5	60	20	2	10	66	1.33
9720129--9720159	8	3.8	8	91	8	53	87	0	0	12	0.55
9720185--9720233	25	2.0	25	84	8	64	42	0	8	48	1.32
9726036--9726074	21	1.9	20	89	5	60	79	0	10	10	0.94
9726044--9726091	14	3.4	14	91	5	78	79	0	12	8	0.94
9726066--9726109	19	2.2	21	88	8	65	81	2	13	2	0.88
9727103--9727401	42	7.1	41	78	8	228	26	14	19	39	1.90
9727103--9727401	41	7.1	42	81	6	270	26	14	19	39	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113