genome.fa.s68.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  47  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12659072--12659111	20	2.0	21	85	5	55	40	0	10	50	1.36
12659100--12659173	32	2.3	32	88	2	105	47	0	1	51	1.09
12660532--12660616	26	3.2	26	75	21	102	38	14	17	29	1.89
12673114--12673154	12	3.3	12	83	6	55	56	0	0	43	0.99
12675487--12675527	17	2.4	18	80	12	50	36	7	2	53	1.42
12676015--12676071	28	2.0	28	100	0	114	42	3	17	36	1.67
12676983--12677030	17	2.6	19	81	18	66	25	0	14	60	1.34
12676994--12677029	17	2.1	17	100	0	72	27	0	13	58	1.36
12682780--12682834	27	2.2	25	84	12	69	65	14	1	18	1.36
12684155--12684221	18	3.9	16	78	16	71	61	5	1	31	1.29
12684151--12684218	35	1.9	35	88	5	102	58	5	1	33	1.31
12684230--12684276	20	2.3	20	85	7	60	65	2	0	31	1.04
12684301--12684375	19	3.9	19	92	0	114	52	0	1	46	1.09
12684417--12684499	17	4.8	17	79	7	78	33	3	6	56	1.41
12684417--12684493	16	4.6	16	80	9	73	33	3	6	55	1.44
12684411--12684499	34	2.6	34	77	7	90	33	3	6	56	1.42
12684512--12684581	19	3.7	19	84	0	86	32	2	7	57	1.41
12684510--12684583	38	1.9	39	88	2	114	32	2	6	58	1.39
12684510--12684645	10	14.0	9	70	12	65	33	3	6	56	1.43
12684535--12684621	29	3.0	29	77	14	81	32	3	6	57	1.42
12684510--12684634	19	6.5	18	72	14	81	32	3	7	56	1.42
12684510--12684646	9	14.0	10	69	15	65	33	3	6	56	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12684672--12684736	29	2.3	28	84	12	80	46	3	4	46	1.39
12684726--12684776	18	3.0	16	88	11	75	35	1	3	58	1.28
12684726--12684777	17	3.0	17	83	13	70	34	1	3	59	1.27
12684803--12684842	19	2.1	19	85	0	53	22	10	15	52	1.71
12691712--12691755	3	14.7	3	100	0	88	65	0	0	34	0.93
12703617--12703642	2	13.0	2	100	0	52	50	0	0	50	1.00
12713181--12713238	21	2.7	21	97	2	107	77	0	5	17	0.94
12713181--12713239	11	5.5	11	82	10	77	76	0	6	16	1.00
12713525--12713585	24	2.6	24	77	12	74	34	3	4	57	1.36
12713655--12713702	24	2.1	22	84	7	60	60	2	0	37	1.09
12715110--12715191	30	2.7	29	74	7	74	32	13	4	48	1.63
12715406--12715450	2	22.5	2	86	0	54	48	8	0	42	1.34
12716637--12716666	15	2.0	15	93	0	51	40	6	16	36	1.75
12720430--12720460	2	15.5	2	100	0	62	51	0	0	48	1.00
12722750--12722783	7	4.9	7	85	0	50	85	0	14	0	0.60
12725025--12725097	34	2.1	35	82	12	89	30	0	6	63	1.21
12725025--12725097	33	2.1	36	85	7	98	30	0	6	63	1.21
12725782--12725833	19	2.7	19	79	5	61	55	3	1	38	1.29
12725802--12725845	19	2.3	19	80	0	52	54	4	2	38	1.33
12725882--12725919	19	2.0	19	89	0	58	50	5	7	36	1.54
12725925--12725987	28	2.2	29	83	13	78	58	1	0	39	1.07
12725946--12725987	14	2.9	15	77	22	54	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12726016--12726073	25	2.3	25	80	19	68	46	0	0	53	1.00
12726093--12726156	31	2.0	33	85	11	89	45	4	4	45	1.45
12726181--12726210	14	2.1	15	93	6	53	33	0	0	66	0.92
12726181--12726214	14	2.5	13	81	9	50	35	0	0	64	0.94
12727368--12727409	21	2.0	21	100	0	84	23	9	28	38	1.86
12730902--12730935	2	17.0	2	100	0	68	50	0	0	50	1.00
12735244--12735309	33	2.1	29	81	15	71	37	10	18	33	1.85
12738368--12738428	22	2.8	22	87	9	81	49	1	0	49	1.10
12739950--12739993	12	3.8	12	81	6	54	43	2	0	54	1.12
12740207--12740290	32	2.4	33	78	13	89	48	0	3	47	1.19
12740227--12740281	16	3.5	16	73	11	51	52	0	0	47	1.00
12740894--12740938	8	5.6	8	82	7	56	46	2	0	51	1.13
12746279--12746424	72	2.0	72	100	0	292	32	9	21	35	1.86
12752426--12752459	13	2.6	13	95	0	59	50	0	0	50	1.00
12752453--12752496	15	2.9	15	82	3	61	43	4	4	47	1.44
12752548--12752607	18	3.4	17	76	13	59	41	0	5	53	1.23
12753275--12753304	15	1.9	16	93	6	53	16	0	13	70	1.18
12754015--12754069	26	2.1	25	83	12	67	47	0	3	49	1.19
12754006--12754096	25	3.6	25	76	18	73	43	0	4	51	1.21
12765897--12765953	24	2.3	26	78	6	64	50	21	7	21	1.71
12766188--12766453	51	5.2	51	83	6	322	38	17	7	36	1.78
12766188--12766453	103	2.6	103	91	3	428	38	17	7	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12767241--12767428	55	3.4	55	77	3	182	43	14	19	21	1.87
12768159--12768192	5	7.0	5	90	6	52	0	0	14	85	0.60
12772818--12772866	22	2.3	20	86	6	62	26	0	4	69	1.06
12772973--12773023	15	3.3	15	82	15	59	72	1	0	25	0.95
12772973--12773034	25	2.4	25	84	7	81	75	1	0	22	0.88
12772974--12773035	19	3.2	19	79	4	70	77	1	0	20	0.85
12773508--12773668	51	3.1	50	78	8	171	36	17	7	38	1.78
12773937--12774045	51	2.1	51	83	3	130	40	12	4	42	1.64
12782886--12782976	9	10.2	9	69	19	50	54	2	2	40	1.24
12782932--12782983	23	2.3	24	80	12	65	57	1	0	40	1.10
12782953--12782994	16	2.4	18	84	15	70	52	0	0	47	1.00
12790875--12790909	17	2.0	17	88	5	52	85	0	11	2	0.69
12790875--12790909	6	6.0	6	90	6	54	85	0	11	2	0.69
12800065--12800093	14	2.1	14	93	6	51	62	6	0	31	1.22
12800001--12800141	76	1.9	72	85	8	194	55	3	6	34	1.43
12801391--12801430	19	2.1	19	100	0	80	22	20	10	47	1.79
12804185--12804229	16	2.7	17	82	3	56	73	0	11	15	1.10
12804177--12804230	7	6.8	8	76	19	51	74	0	11	14	1.08
12804178--12804203	7	3.7	7	100	0	52	76	0	11	11	1.01
12804168--12804253	25	3.5	26	82	7	90	70	0	16	12	1.16
12805483--12805593	22	4.8	23	67	16	77	39	7	11	41	1.69
12805439--12805601	47	3.6	45	76	9	127	38	7	12	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12805811--12805865	16	3.2	17	79	7	67	52	9	7	30	1.60
12805897--12806008	17	6.5	18	79	7	72	34	16	7	41	1.75
12805897--12805950	18	3.1	18	86	2	74	42	14	9	33	1.78
12805959--12806006	17	2.8	17	96	0	87	33	18	0	47	1.49
12811838--12812229	122	3.2	122	77	8	305	34	13	13	38	1.85
12811838--12812254	121	3.4	122	77	8	386	34	14	13	38	1.85
12814655--12814743	46	1.9	47	88	2	135	50	1	8	39	1.41
12814795--12814850	24	2.3	24	75	6	60	57	3	1	37	1.27
12819017--12819100	22	3.7	22	76	12	89	38	2	1	58	1.19
12819017--12819103	45	2.0	41	82	14	104	36	2	1	59	1.17
12820070--12820135	33	2.0	33	88	2	98	53	4	1	40	1.31
12823083--12823111	14	2.0	15	93	6	51	51	0	0	48	1.00
12833018--12833056	18	2.2	18	95	0	69	28	20	15	35	1.93
12834031--12834092	26	2.4	26	94	0	106	27	14	19	38	1.90
12840258--12840286	14	2.1	14	93	6	51	62	6	0	31	1.22
12842121--12842361	121	2.0	120	82	7	292	33	14	14	37	1.87
12842989--12843027	13	3.2	13	82	14	55	76	2	5	15	1.06
12845013--12845071	24	2.4	24	83	8	66	59	3	1	35	1.24
12845966--12845998	14	2.3	15	94	5	59	9	18	12	60	1.57
12845992--12846022	7	4.4	7	95	0	53	22	16	16	45	1.85
12845992--12846026	14	2.6	14	86	4	54	20	14	17	48	1.81
12850340--12850405	33	2.0	33	88	2	98	53	4	1	40	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12851919--12851957	20	1.9	19	90	10	60	56	2	2	38	1.27
12853498--12853546	14	3.3	15	78	18	57	38	4	0	57	1.18
12853696--12853755	31	1.9	31	86	0	84	35	8	3	53	1.48
12854243--12854312	33	2.1	35	86	5	99	61	1	4	32	1.24
12856963--12857019	2	28.5	2	100	0	114	50	0	49	0	1.00
12857333--12857363	2	15.5	2	100	0	62	51	0	0	48	1.00
12859489--12859513	8	3.1	8	100	0	50	24	12	12	52	1.72
12861982--12862014	12	2.6	13	85	4	50	3	9	6	81	0.95
12863095--12863134	20	2.0	21	85	5	55	2	10	7	80	1.00
12865331--12865358	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113