genome.fa.s68.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  94  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19382044--19382076	14	2.4	14	90	5	50	18	0	3	78	0.87
19382357--19382543	47	3.9	47	81	5	214	38	21	11	28	1.88
19382329--19382547	47	4.5	48	77	9	212	38	20	11	29	1.87
19382329--19382547	96	2.3	95	83	7	271	38	20	11	29	1.87
19384570--19384612	18	2.4	18	100	0	86	20	11	18	48	1.79
19386875--19386919	14	3.1	14	80	3	54	60	4	24	11	1.49
19395243--19395290	20	2.4	20	85	0	60	20	27	37	14	1.92
19406304--19406437	47	2.8	47	86	2	187	28	12	20	38	1.89
19406302--19406490	47	3.8	49	81	6	177	30	12	18	39	1.87
19406668--19406714	12	3.9	12	75	10	51	68	2	0	29	1.02
19406729--19406761	14	2.4	14	90	5	50	78	3	0	18	0.87
19408604--19408677	32	2.3	32	85	0	94	37	22	13	25	1.91
19408586--19408778	105	1.8	105	82	4	246	39	21	13	25	1.90
19412284--19412336	17	3.3	16	80	12	56	71	0	0	28	0.86
19415044--19415101	15	3.8	16	78	17	61	25	5	1	67	1.21
19415139--19415196	22	2.6	23	83	10	75	32	5	3	58	1.37
19416067--19416104	17	2.2	17	86	9	51	26	0	0	73	0.83
19416127--19416183	7	7.4	7	75	24	53	14	3	1	80	0.92
19416122--19416217	17	5.6	17	71	20	58	15	6	2	76	1.09
19416225--19416592	59	6.2	59	78	8	397	43	8	12	35	1.73
19416228--19416592	120	3.1	119	86	4	506	43	7	12	35	1.72
19416229--19416564	178	1.9	177	84	9	452	42	7	13	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19421308--19421727	55	7.8	54	84	10	531	36	11	7	44	1.69
19421308--19421726	108	3.9	108	89	8	599	36	11	7	44	1.69
19421740--19421806	18	3.8	17	74	18	57	76	1	7	14	1.08
19421740--19421843	23	4.2	24	75	18	79	75	1	5	17	1.10
19421740--19421829	17	5.3	16	70	19	58	76	2	5	15	1.07
19421741--19421830	29	3.1	27	79	14	76	76	2	6	14	1.08
19421852--19421889	17	2.2	17	86	9	51	73	0	0	26	0.83
19422730--19422782	22	2.4	22	84	9	72	58	3	5	32	1.39
19422825--19422882	15	3.8	16	78	17	61	67	1	5	25	1.21
19422827--19422886	7	8.6	7	77	15	54	68	1	5	25	1.19
19431148--19431172	13	1.9	13	100	0	50	28	0	0	72	0.86
19431164--19431230	20	3.6	19	78	7	66	28	0	2	68	1.04
19431427--19431596	49	3.4	49	80	10	177	40	18	12	28	1.88
19431458--19431595	49	2.8	48	85	4	179	38	19	13	28	1.90
19441141--19441169	8	3.8	8	95	4	51	82	0	10	6	0.83
19442324--19442475	40	3.5	43	79	10	150	23	13	22	40	1.89
19443766--19443848	5	16.6	5	70	14	55	16	6	1	75	1.06
19443780--19443853	16	4.9	15	78	16	66	14	6	1	77	1.05
19443779--19443853	21	3.5	21	79	15	73	14	8	1	76	1.08
19443824--19443848	13	1.9	13	100	0	50	20	0	0	80	0.72
19443861--19444115	61	4.2	60	82	8	255	43	7	11	37	1.68
19443936--19444158	67	3.5	65	88	6	307	39	5	14	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19445841--19445865	8	3.1	8	100	0	50	60	0	0	40	0.97
19446231--19446284	16	3.3	16	77	10	56	72	0	0	27	0.85
19449947--19449971	8	3.1	8	100	0	50	60	0	0	40	0.97
19450320--19450372	17	3.3	16	80	12	56	71	0	0	28	0.86
19455241--19455279	17	2.5	15	81	18	53	56	10	5	28	1.54
19455220--19455274	19	3.1	18	82	12	60	50	12	5	30	1.63
19455335--19455427	41	2.3	40	87	7	127	49	13	6	30	1.68
19455396--19455654	41	6.5	41	87	5	377	52	11	5	30	1.58
19455336--19455652	119	2.6	119	85	8	412	52	11	5	30	1.61
19455336--19455652	78	4.0	81	85	8	400	52	11	5	30	1.61
19455639--19455772	24	5.8	24	72	17	95	55	6	3	34	1.44
19455668--19455772	47	2.3	45	83	6	122	56	6	1	35	1.37
19455772--19455821	17	2.9	17	76	8	57	46	12	12	30	1.77
19456860--19457064	28	7.3	28	68	22	103	26	2	2	68	1.15
19456870--19456952	24	3.7	22	84	7	105	22	1	2	73	1.02
19456859--19457017	13	12.1	13	72	15	80	25	1	1	71	1.04
19456859--19457120	7	36.1	7	67	24	88	28	3	1	66	1.20
19456936--19457096	4	40.5	4	67	15	59	29	4	2	63	1.27
19457006--19457074	30	2.3	29	80	9	68	28	4	4	62	1.34
19457033--19457096	24	2.8	24	95	4	114	29	7	0	62	1.23
19457885--19457930	16	2.9	16	84	9	51	21	2	0	76	0.90
19457974--19458007	6	5.5	6	86	6	50	17	2	0	79	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19458023--19458295	58	4.7	59	78	7	290	44	6	13	35	1.70
19458023--19458295	117	2.3	117	86	3	381	44	6	13	35	1.70
19458032--19458297	59	4.5	59	78	8	276	42	6	14	36	1.72
19462211--19462282	18	3.8	18	74	15	65	76	0	12	11	1.02
19462204--19462282	10	8.2	10	72	13	76	75	0	12	11	1.04
19462660--19462703	20	2.2	20	100	0	88	40	4	25	29	1.75
19463966--19464360	41	9.6	41	82	3	393	25	14	22	38	1.91
19463966--19464357	83	4.8	82	82	4	441	25	14	21	38	1.91
19463966--19464229	124	2.1	124	87	2	370	25	14	22	38	1.91
19463966--19464421	41	11.1	41	78	5	278	25	14	22	37	1.92
19464456--19464597	45	3.2	44	82	6	189	23	15	23	38	1.93
19464799--19464872	7	11.1	7	83	13	86	21	1	1	75	0.95
19464877--19465081	3	63.3	3	69	23	73	29	4	1	64	1.23
19464877--19465020	28	5.2	28	79	15	124	30	4	2	63	1.25
19464869--19465052	26	6.9	24	75	19	111	30	4	2	61	1.28
19464956--19465053	20	5.0	19	77	14	67	34	5	1	59	1.26
19464957--19465056	48	2.0	48	84	9	130	33	6	1	60	1.28
19465045--19465090	16	3.1	15	76	23	53	17	4	0	78	0.91
19465897--19465930	16	2.1	17	88	5	52	17	5	0	76	0.98
19465935--19465972	19	2.0	19	85	10	51	31	0	5	63	1.17
19465995--19466033	6	6.3	6	88	5	60	17	2	0	79	0.84
19466029--19466325	58	5.1	58	81	6	341	42	8	12	36	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19466052--19466325	118	2.3	116	90	5	419	43	8	13	35	1.74
19470255--19470340	30	2.9	29	81	13	86	76	0	16	6	0.99
19470259--19470351	20	4.8	20	72	27	78	78	0	15	6	0.94
19470259--19470349	18	5.2	18	74	18	77	79	0	14	6	0.93
19470255--19470348	28	3.4	27	79	19	88	76	0	15	7	1.00
19470259--19470351	38	2.4	39	81	15	113	78	0	15	6	0.94
19470266--19470340	30	2.5	31	83	12	88	80	0	14	5	0.89
19472015--19472434	41	10.1	41	84	5	450	25	14	21	38	1.91
19472015--19472328	128	2.5	123	85	7	443	25	14	21	38	1.91
19472015--19472413	83	4.8	81	84	5	451	25	14	21	39	1.91
19472470--19472599	42	3.0	45	82	6	194	23	14	19	42	1.88
19472799--19472939	6	22.2	6	68	21	67	22	2	0	74	0.97
19472802--19472878	28	2.7	28	85	2	91	18	1	1	79	0.88
19472799--19472883	33	2.5	33	85	12	111	17	2	1	78	0.91
19472799--19472929	17	7.6	17	70	16	85	22	2	0	74	0.97
19472799--19472937	33	4.4	31	72	17	99	22	2	0	74	0.97
19472805--19472987	17	9.7	18	69	25	80	25	2	2	69	1.13
19472869--19473012	27	5.3	27	75	15	104	31	3	2	62	1.23
19472951--19473012	24	2.5	24	89	5	88	35	3	1	59	1.23
19472808--19472991	74	2.5	73	76	18	182	26	2	2	69	1.14
19472873--19473045	54	3.3	52	73	16	146	28	4	1	65	1.22
19473341--19473653	42	7.3	41	75	14	276	26	14	21	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19473698--19473816	41	2.9	39	80	9	132	25	19	21	34	1.96
19474089--19474183	22	4.3	21	85	11	120	23	1	2	73	1.00
19474106--19474195	11	8.1	11	70	9	58	23	2	2	72	1.07
19474173--19474354	18	10.5	17	67	22	62	30	4	1	62	1.26
19474145--19474317	4	44.5	4	67	13	60	29	4	2	64	1.24
19474089--19474341	7	34.3	7	70	19	114	28	3	1	65	1.20
19474192--19474318	55	2.4	51	77	18	93	32	3	2	61	1.27
19474101--19474345	81	3.2	80	76	16	191	29	4	2	64	1.23
19474098--19474345	53	4.8	52	72	19	168	29	4	2	64	1.23
19474334--19474385	24	2.1	25	82	7	61	13	9	0	76	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113