genome.fa.s68.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  80  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16981180--16981215	18	2.0	18	88	0	54	30	11	2	55	1.49
16981181--16981223	18	2.4	18	84	0	50	34	6	2	55	1.39
16979570--16984754	356	14.4	352	71	12	1958	40	8	10	41	1.69
16982727--16982782	17	3.3	17	73	14	53	46	1	14	37	1.55
16982770--16984754	181	11.1	180	73	8	1339	40	8	10	40	1.70
16984255--16984551	162	1.8	163	82	5	386	40	7	9	42	1.66
16984724--16984802	34	2.3	35	88	4	124	43	3	12	40	1.61
16984545--16984960	215	1.9	214	80	3	487	40	8	10	40	1.70
16984760--16985177	180	2.3	181	80	4	461	40	7	10	41	1.68
16984761--16985524	181	4.2	181	75	7	475	40	9	10	40	1.71
16986207--16989286	181	17.2	181	73	8	1804	40	8	10	41	1.69
16987003--16989286	359	6.4	359	74	7	1732	39	8	9	41	1.69
16988182--16988515	172	1.9	176	80	7	394	38	8	9	42	1.68
16990396--16992743	181	13.1	178	77	5	1715	41	8	9	41	1.67
16990396--17000760	362	28.4	361	69	13	2926	40	8	9	41	1.67
16990312--17005922	539	28.7	536	70	12	3496	40	8	9	41	1.68
16992198--16992230	18	1.9	17	88	11	50	48	6	6	39	1.53
16992756--16993993	179	6.9	179	76	7	965	39	7	10	42	1.69
16992875--16993828	356	2.7	356	79	6	935	39	7	10	42	1.67
16992771--16993993	359	3.4	355	77	6	962	39	8	10	42	1.69
16993988--17000679	181	37.2	177	72	11	2169	40	7	9	42	1.67
16994030--17000680	718	9.2	703	73	11	2842	40	7	9	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16994030--17000752	899	7.5	890	74	10	3454	40	7	9	42	1.67
16998600--16998682	16	4.8	17	70	14	62	50	10	3	34	1.55
16998597--16998682	35	2.5	35	100	0	172	50	11	3	34	1.56
16998617--16998678	18	3.5	18	72	12	65	50	12	1	35	1.51
16998814--16998862	16	2.8	18	72	15	57	44	10	8	36	1.68
16996382--17000760	181	24.2	179	73	10	2277	39	8	9	42	1.68
17000977--17001278	147	2.1	139	82	10	360	41	6	7	44	1.57
17001170--17001495	179	1.8	180	84	5	444	41	7	8	42	1.64
17001186--17001825	331	1.9	331	82	5	810	40	8	9	41	1.68
17001517--17001914	180	2.2	180	79	7	430	40	8	8	42	1.66
17001981--17002990	179	5.6	179	73	12	423	39	8	10	41	1.70
17001975--17005930	181	22.0	179	75	7	2717	39	8	10	41	1.69
17001975--17006368	719	6.2	716	76	7	3094	39	8	10	41	1.69
17001985--17005919	900	4.4	888	75	7	2701	39	8	10	41	1.69
17006001--17006338	171	2.0	174	83	5	436	40	7	8	43	1.64
17006693--17006814	60	2.0	60	88	0	181	42	9	5	42	1.60
17006888--17007835	181	5.2	180	76	7	710	40	9	8	41	1.68
17007625--17008045	214	2.0	214	89	2	641	41	9	8	40	1.67
17007835--17009388	180	8.7	181	77	6	1275	43	9	7	39	1.65
17009058--17009663	326	1.9	323	81	5	749	41	10	7	40	1.68
17009375--17010040	181	3.7	178	80	6	690	40	9	7	41	1.67
17010064--17016749	181	37.1	178	74	10	4000	41	10	8	39	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17010216--17016749	718	9.1	712	74	9	4234	41	10	8	39	1.68
17012529--17012561	18	1.9	17	88	11	50	42	6	3	48	1.43
17012528--17012579	17	3.0	17	75	13	52	40	5	1	51	1.37
17013323--17015743	180	13.5	184	75	11	572	42	9	7	39	1.67
17015034--17015350	162	2.0	162	86	3	451	42	10	8	38	1.70
17013872--17016730	353	8.0	354	74	11	1660	41	10	8	39	1.68
17016774--17017321	177	3.1	178	78	8	531	42	9	8	39	1.69
17018118--17018151	15	2.1	16	89	10	52	52	0	0	47	1.00
17017754--17018416	357	1.9	358	82	4	847	39	10	9	41	1.71
17017338--17018615	176	7.2	176	75	8	820	39	9	8	42	1.67
17017369--17018624	180	7.0	178	75	7	728	39	9	8	42	1.67
17018512--17018743	119	1.9	120	84	0	304	34	9	7	47	1.65
17018626--17019298	180	3.7	179	80	4	708	40	9	8	41	1.67
17017994--17019228	660	1.9	654	81	5	1486	39	9	8	42	1.69
17018627--17019298	361	1.9	361	82	3	870	40	9	8	41	1.67
17019729--17019753	13	1.9	13	100	0	50	88	0	12	0	0.53
17019770--17020071	58	5.0	59	77	9	288	37	11	7	42	1.71
17019770--17020063	119	2.4	119	88	6	412	38	12	8	41	1.72
17020081--17020121	16	2.5	16	88	4	55	75	0	7	17	1.02
17019864--17020107	119	2.0	120	79	6	255	43	9	7	39	1.67
17020071--17020141	20	3.8	18	75	14	63	74	1	8	15	1.12
17020699--17020737	19	2.0	19	85	5	51	20	33	5	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17020944--17020993	21	2.3	22	82	3	66	82	6	2	10	0.92
17020943--17020993	22	2.4	21	78	9	59	82	5	1	9	0.91
17021031--17021064	16	2.1	16	88	0	50	64	2	5	26	1.30
17021060--17021098	20	1.9	21	89	5	62	58	5	5	30	1.41
17021160--17021252	22	4.1	22	76	20	68	72	2	2	23	1.07
17021184--17021255	31	2.3	31	92	4	119	75	1	0	23	0.89
17021189--17021252	12	5.6	12	70	15	55	76	1	0	21	0.87
17022500--17022565	18	3.4	19	81	18	82	13	10	0	75	1.04
17022498--17022562	34	1.9	33	87	9	96	12	9	0	78	0.96
17022499--17022553	8	6.8	8	73	19	51	12	9	0	78	0.97
17032859--17033138	58	4.7	58	80	8	305	36	13	7	42	1.73
17033041--17033129	27	3.2	27	63	25	67	37	16	5	40	1.73
17032860--17033137	122	2.4	116	86	7	357	36	13	7	42	1.72
17033156--17033218	17	3.8	16	76	12	56	79	1	4	14	0.97
17033163--17033273	10	10.9	10	71	14	68	74	2	2	19	1.06
17033238--17033284	15	3.2	15	88	8	62	80	0	2	17	0.80
17034208--17034362	4	38.5	4	67	19	56	66	3	3	26	1.24
17034199--17034275	26	3.0	25	85	9	86	64	2	2	29	1.20
17034171--17034245	14	5.3	16	68	28	55	61	4	5	29	1.36
17034206--17034369	77	2.1	78	78	10	172	66	3	3	26	1.23
17034333--17034404	19	3.8	20	75	15	66	77	2	0	19	0.88
17034339--17034403	29	2.2	29	83	5	87	78	1	0	20	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17034331--17034399	7	10.1	7	77	16	65	75	2	0	21	0.93
17034339--17034404	14	4.9	13	81	13	73	78	1	0	19	0.82
17035183--17037423	181	12.5	181	77	6	1851	41	10	8	39	1.69
17035611--17037395	902	2.0	898	80	5	2012	41	9	8	40	1.68
17035198--17037411	720	3.1	714	78	7	1923	41	10	8	39	1.69
17037259--17037561	145	2.1	140	83	6	367	42	9	7	39	1.66
17037427--17040094	179	15.1	180	73	10	1627	41	10	8	39	1.69
17037642--17040094	355	6.9	354	74	10	1049	42	9	8	39	1.69
17038961--17038998	19	2.0	19	89	0	58	44	7	2	44	1.47
17040196--17043625	181	19.1	181	75	6	2344	41	10	8	39	1.70
17043622--17045348	181	9.7	178	75	8	1097	42	9	7	39	1.67
17045439--17045488	18	2.8	18	90	3	75	44	16	0	40	1.47
17046645--17049624	180	16.6	181	76	6	2148	40	7	10	42	1.68
17049494--17049772	148	1.9	146	87	2	407	39	4	8	47	1.55
17049634--17050008	176	2.1	180	80	4	429	39	8	9	42	1.67
17050088--17051817	361	4.8	355	77	8	1306	41	9	8	40	1.68
17050088--17052057	180	11.0	181	76	8	1470	41	9	8	40	1.68
17052581--17053236	181	3.6	180	74	5	554	43	10	7	39	1.66
17052971--17053024	17	3.1	18	75	20	51	46	11	1	40	1.50
17052614--17053327	362	2.0	360	82	4	882	43	10	6	39	1.65
17053425--17053835	181	2.3	177	77	7	416	38	10	9	40	1.73
17054074--17067946	181	77.7	178	69	13	3558	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17056456--17056739	155	1.8	155	86	2	410	41	10	8	40	1.69
17060485--17060794	155	2.0	153	81	2	361	40	9	8	41	1.68
17061554--17062348	354	2.2	356	78	7	826	42	10	7	39	1.68
17062301--17062627	176	1.8	176	82	7	417	38	11	7	42	1.69
17062104--17062627	182	2.9	180	79	8	430	41	10	7	40	1.68
17062827--17062857	16	1.9	16	100	0	62	51	0	12	35	1.40
17063379--17067926	538	8.5	533	74	9	2659	41	9	8	40	1.67
17065412--17065450	21	2.0	21	90	10	64	30	10	15	43	1.80
17066250--17066282	18	1.9	17	88	11	50	39	6	6	48	1.53
17063400--17067926	357	12.7	357	73	9	2487	41	9	8	40	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113