genome.fa.s68.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  6  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1520602--1520655	18	3.2	17	84	7	74	55	0	0	44	0.99
1522075--1522100	13	2.0	13	100	0	52	30	23	0	46	1.53
1524262--1524439	91	2.0	91	92	2	295	30	12	21	34	1.91
1532457--1532850	211	1.9	203	91	5	637	27	24	25	22	2.00
1535082--1535309	114	2.0	113	89	0	348	29	5	21	43	1.75
1538048--1538089	17	2.3	19	80	12	52	61	2	0	35	1.09
1538226--1538308	29	2.7	32	85	7	93	54	6	0	39	1.25
1538256--1538315	29	2.1	29	96	0	111	48	6	0	45	1.29
1564228--1564260	11	2.8	12	90	4	50	48	3	3	45	1.33
1564411--1564475	19	3.2	20	80	16	80	61	0	0	38	0.96
1566757--1566790	14	2.2	16	90	10	54	79	0	0	20	0.73
1570767--1571128	179	2.0	178	83	2	449	30	14	18	37	1.90
1573118--1573155	2	19.0	2	100	0	76	50	0	0	50	1.00
1575343--1575379	2	18.5	2	100	0	74	51	0	0	48	1.00
1575952--1575981	14	2.1	14	93	0	51	13	20	36	30	1.90
1584369--1584430	29	2.1	29	96	0	115	22	11	3	62	1.42
1584381--1584443	29	2.2	29	82	0	72	22	12	4	60	1.51
1585517--1585555	2	19.5	2	94	0	69	51	2	46	0	1.14
1587944--1587970	2	13.5	2	100	0	54	51	0	0	48	1.00
1589608--1589642	15	2.2	16	90	5	54	62	0	0	37	0.95
1592586--1592619	2	17.0	2	93	0	59	50	2	0	47	1.16
1598454--1598622	85	2.0	85	92	2	286	28	13	9	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1605582--1605634	4	13.8	4	74	21	51	22	1	1	73	1.03
1605576--1605622	22	2.1	22	84	7	60	23	2	0	74	0.93
1606442--1606746	57	5.3	58	88	6	428	48	4	9	37	1.57
1606587--1606677	32	3.2	27	64	21	69	43	4	13	38	1.64
1606730--1606768	17	2.3	18	82	13	55	46	7	2	43	1.46
1606671--1606820	74	2.0	74	93	0	255	49	3	7	40	1.47
1606730--1606775	16	2.8	17	83	9	60	52	6	2	39	1.40
1606923--1606962	21	1.9	21	84	0	53	5	12	0	82	0.82
1610038--1610076	15	2.7	14	88	4	51	20	17	7	53	1.68
1618342--1618695	45	8.1	44	85	5	380	20	13	21	44	1.85
1618397--1618695	89	3.4	88	87	2	384	19	14	21	43	1.87
1618769--1618830	11	5.6	11	75	7	63	16	0	1	82	0.75
1618770--1618828	16	3.7	16	84	4	75	15	0	1	83	0.74
1618772--1618830	27	2.2	26	87	3	82	15	0	1	83	0.74
1618852--1618891	15	2.7	15	88	7	55	25	2	2	70	1.13
1618971--1619068	41	2.3	41	80	8	106	29	6	4	60	1.40
1619447--1619488	19	2.2	19	95	0	75	26	19	21	33	1.97
1619616--1619661	16	2.6	17	83	12	58	65	0	34	0	0.93
1620051--1620257	58	3.6	56	81	8	229	44	5	11	38	1.63
1624185--1624246	8	7.9	8	80	3	72	80	0	8	11	0.90
1624185--1624246	31	2.0	32	93	3	108	80	0	8	11	0.90
1625501--1625554	22	2.5	22	84	6	65	37	9	18	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625517--1625559	22	1.9	22	85	4	59	39	6	20	32	1.80
1626085--1626380	41	7.1	42	83	2	375	29	15	19	35	1.93
1626073--1626502	83	5.2	83	87	3	503	28	16	18	37	1.92
1626110--1626655	42	13.0	41	82	6	420	27	16	19	36	1.93
1626137--1626701	83	6.7	82	84	5	381	26	16	19	37	1.93
1626344--1626701	125	2.8	127	83	7	397	25	16	20	37	1.93
1626886--1626932	14	3.6	13	77	8	51	19	0	2	78	0.85
1626878--1626914	17	2.2	17	90	4	58	18	0	2	78	0.87
1626890--1627008	62	1.9	62	80	16	140	25	3	1	69	1.13
1627053--1627105	12	4.7	12	73	19	51	35	3	1	58	1.27
1627057--1627143	21	4.2	22	77	11	103	31	4	4	59	1.38
1627699--1627734	16	2.2	17	90	5	56	63	0	36	0	0.94
1627700--1627743	21	2.0	22	86	4	63	59	0	40	0	0.98
1628064--1628111	6	8.3	6	77	9	55	18	4	0	77	0.93
1628080--1628136	16	3.4	16	75	20	55	19	5	1	73	1.11
1628068--1628136	28	2.4	30	81	9	83	18	4	1	75	1.05
1628833--1628896	10	6.7	9	81	12	58	25	0	0	75	0.81
1628837--1628895	21	2.9	18	76	18	55	25	0	0	74	0.82
1628833--1628898	24	2.9	23	80	14	75	25	0	0	74	0.82
1628849--1628895	18	2.8	18	75	15	55	29	0	0	70	0.88
1629652--1629696	10	3.9	11	81	18	56	17	2	0	80	0.82
1629647--1629695	24	2.0	24	84	7	64	18	2	0	79	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1629711--1629959	58	4.3	57	86	7	326	48	3	10	37	1.54
1629728--1629961	114	2.1	113	88	5	348	47	3	10	38	1.55
1629934--1629972	15	2.5	15	95	4	69	53	7	0	38	1.30
1629728--1629961	56	4.1	56	87	7	321	47	3	10	38	1.55
1629883--1630019	72	1.9	72	85	8	190	50	5	6	37	1.51
1630126--1630168	17	2.4	18	80	3	52	4	11	0	83	0.78
1632639--1632681	22	2.0	21	90	4	68	48	13	0	37	1.43
1632640--1632691	22	2.4	22	81	9	63	46	13	1	38	1.54
1654277--1654329	22	2.4	22	87	6	72	67	0	30	1	1.01
1662642--1663144	254	2.0	253	96	1	918	25	23	11	40	1.88
1663231--1663274	22	2.0	21	83	12	54	54	11	9	25	1.65
1667716--1667745	3	10.0	3	100	0	60	33	0	0	66	0.92
1673270--1673324	18	3.0	19	81	7	60	29	3	32	34	1.75
1676887--1676966	21	3.8	21	72	11	65	62	0	0	37	0.95
1676886--1676949	29	2.2	28	81	13	76	65	0	0	34	0.93
1677129--1677169	22	1.9	21	85	5	55	60	0	0	39	0.96
1677185--1677327	50	2.9	49	83	7	166	23	55	2	17	1.55
1677753--1677789	18	2.1	18	89	0	56	2	8	13	75	1.13
1685722--1685756	16	2.1	17	94	5	63	2	11	0	85	0.69
1688270--1688339	33	2.0	33	83	8	86	42	2	17	37	1.64
1698054--1698092	10	3.9	10	79	0	51	33	12	0	53	1.39
1698058--1698112	16	3.6	16	85	7	69	38	7	1	52	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1698058--1698100	20	2.2	20	95	0	77	37	9	0	53	1.33
1698058--1698112	4	13.8	4	86	0	56	38	7	1	52	1.40
1698054--1698112	14	4.1	14	80	8	64	37	8	1	52	1.42
1704050--1704118	34	2.0	34	94	0	120	30	14	24	30	1.95
1704114--1704287	86	2.0	87	95	1	314	43	20	18	18	1.89
1707384--1707425	18	2.4	19	80	15	54	35	4	0	59	1.19
1712097--1712126	16	1.9	15	93	6	51	23	0	0	76	0.78
1722519--1722570	19	2.6	21	81	6	72	57	0	7	34	1.27
1730025--1730082	29	2.0	29	93	0	98	32	22	17	27	1.96
1732853--1733014	84	1.9	84	85	0	225	27	17	17	36	1.93
1746372--1746413	16	2.6	16	75	14	50	50	0	0	50	1.00
1752159--1752247	33	2.7	33	89	0	133	13	8	42	34	1.76
1756421--1756671	72	3.5	72	80	2	227	47	5	6	39	1.54
1756484--1756694	73	2.9	73	83	1	217	50	6	5	37	1.50
1757372--1757460	38	2.3	40	73	23	91	37	7	1	53	1.37
1760669--1760711	21	2.0	22	82	13	54	32	20	2	44	1.65
1763870--1763966	22	4.6	20	72	11	70	52	4	1	42	1.27
1763869--1763979	18	5.8	18	69	22	59	53	3	0	42	1.24
1763879--1763960	42	2.0	41	85	7	112	53	3	1	41	1.26
1763947--1763981	17	2.1	17	94	0	61	57	2	0	40	1.14
1774352--1774377	1	26.0	1	100	0	52	0	0	0	100	0.00
1778372--1778424	26	2.0	26	92	0	88	41	1	1	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1779686--1779729	6	7.3	6	97	0	79	47	36	15	0	1.46
1784989--1785038	7	7.7	7	95	4	72	40	0	0	60	0.97
1784988--1785038	3	16.0	3	84	11	66	39	0	0	60	0.97
1791896--1791922	6	4.5	6	100	0	54	51	14	0	33	1.43
1794201--1794249	22	2.2	22	85	7	64	26	2	4	67	1.19
1795859--1795891	2	16.5	2	100	0	66	51	0	0	48	1.00
1799023--1799108	42	2.0	42	88	4	129	29	11	26	32	1.92
1803426--1803461	1	36.0	1	94	0	54	0	5	0	94	0.31
1804008--1804280	140	2.0	140	91	1	440	36	22	18	23	1.95
1808946--1808990	20	2.2	21	84	11	58	46	2	0	51	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113