genome.fa.s68.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  89  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18530107--18530223	61	1.9	61	89	0	180	51	13	11	23	1.73
18530162--18530358	43	4.6	43	75	5	182	45	13	14	26	1.82
18536792--18536836	23	1.9	24	82	13	58	31	6	6	55	1.52
18538202--18538246	19	2.4	19	88	0	63	35	26	4	33	1.77
18540037--18540525	211	2.2	219	82	7	552	24	12	8	54	1.66
18540532--18540580	24	2.1	24	81	11	57	24	4	6	65	1.33
18540537--18540589	24	2.2	25	83	10	65	22	7	3	66	1.34
18541649--18542118	249	1.9	253	84	5	639	27	12	8	50	1.70
18543225--18543267	10	4.0	11	82	11	54	69	0	0	30	0.88
18543253--18543293	21	2.0	21	85	0	55	53	0	0	46	1.00
18543335--18543376	16	2.6	16	84	0	66	57	4	0	38	1.20
18543368--18543411	21	2.0	22	95	4	81	47	2	0	50	1.13
18543405--18543453	7	6.9	7	81	9	55	57	0	2	40	1.10
18543740--18543782	16	2.6	16	85	7	59	32	0	0	67	0.91
18544119--18544150	3	10.7	3	93	0	55	68	28	0	3	1.04
18544116--18544156	18	2.3	18	95	0	73	68	21	0	9	1.18
18544122--18544153	15	2.1	15	100	0	64	68	25	0	6	1.12
18544149--18544189	3	13.7	3	100	0	82	68	0	0	31	0.90
18544360--18544384	13	1.9	13	100	0	50	48	0	0	52	1.00
18546392--18546438	19	2.5	19	86	6	60	78	4	4	12	1.04
18547223--18547316	3	33.0	3	70	21	60	63	3	2	30	1.21
18547242--18547352	5	21.2	5	77	11	82	56	7	1	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18547552--18547958	55	7.4	54	73	10	213	39	14	23	23	1.91
18547641--18547961	164	2.0	163	82	6	389	39	15	23	21	1.91
18547696--18547897	109	1.9	109	81	8	250	39	15	24	21	1.92
18548728--18548766	18	2.2	18	90	0	60	7	5	0	87	0.68
18548737--18548776	18	2.2	18	86	8	55	10	2	0	87	0.63
18553528--18553578	19	2.7	18	85	11	66	76	3	1	17	1.03
18553529--18553564	12	2.8	13	87	8	56	77	5	0	16	0.94
18553529--18553570	12	3.2	13	81	18	52	78	4	0	16	0.91
18554361--18554494	3	46.3	3	66	20	63	56	5	2	35	1.37
18554361--18554407	19	2.4	19	85	3	67	63	2	0	34	1.06
18554361--18554495	16	8.7	16	67	18	72	56	5	2	35	1.37
18554375--18554495	11	11.2	11	71	15	56	54	5	3	36	1.41
18558385--18558417	17	1.9	17	93	0	57	66	15	6	12	1.42
18558432--18558617	67	2.8	66	83	7	216	56	5	9	28	1.54
18559629--18559673	23	2.0	21	84	16	56	26	4	15	53	1.61
18559928--18560548	301	2.0	304	83	2	793	40	8	6	44	1.59
18562291--18562323	2	16.5	2	93	0	57	48	3	0	48	1.17
18566342--18566366	5	5.0	5	100	0	50	0	0	20	80	0.72
18566918--18566977	30	2.0	30	90	0	93	25	36	5	33	1.78
18571077--18571110	16	2.1	16	100	0	68	38	5	11	44	1.65
18571660--18571711	21	2.5	21	81	12	54	55	17	17	9	1.67
18571878--18571940	19	3.4	18	80	8	56	26	0	19	53	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18572163--18572352	73	2.6	72	81	11	199	46	6	11	34	1.67
18572487--18572579	48	1.9	49	84	2	125	27	13	8	49	1.72
18573586--18573625	16	2.4	16	87	4	53	77	10	2	10	1.08
18573706--18573756	25	2.0	25	81	7	59	23	1	9	64	1.34
18573698--18573741	20	2.3	18	80	7	52	25	2	6	65	1.28
18577271--18577482	107	2.0	106	85	5	284	34	22	15	27	1.94
18593980--18594021	21	2.0	21	95	0	75	78	9	0	11	0.96
18595263--18595311	3	16.3	3	95	0	89	67	2	0	30	1.02
18595451--18595492	16	2.6	16	85	11	50	40	40	0	19	1.51
18595450--18595506	18	3.4	17	80	9	64	45	35	0	19	1.50
18595501--18595535	15	2.4	15	85	4	54	57	17	0	25	1.40
18601743--18601873	55	2.4	55	80	0	154	28	12	12	47	1.77
18601848--18602426	50	11.6	49	76	13	466	31	13	14	40	1.85
18601844--18602386	201	2.7	197	81	7	553	31	13	14	40	1.85
18602302--18602425	49	2.5	50	81	5	135	33	15	13	37	1.87
18603104--18603426	144	2.2	144	81	3	373	31	13	12	43	1.81
18605002--18605053	9	6.1	9	78	17	58	32	19	7	40	1.80
18607226--18607281	16	3.2	16	82	14	51	42	0	5	51	1.24
18607139--18607386	123	2.1	118	86	5	345	35	6	5	52	1.51
18607139--18607386	59	4.1	57	80	11	255	35	6	5	52	1.51
18607508--18607564	22	2.6	22	94	0	105	19	29	24	26	1.98
18608672--18608918	42	6.3	40	84	10	245	40	24	12	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18608745--18608885	33	4.0	33	82	13	183	37	27	10	24	1.88
18608811--18608922	41	2.7	42	91	1	172	41	24	10	24	1.86
18608870--18608977	55	2.0	55	90	3	173	44	21	13	20	1.86
18609315--18609354	21	1.9	21	90	10	64	32	17	10	40	1.83
18609424--18609540	58	2.0	58	88	0	171	35	22	10	32	1.88
18610686--18610725	9	4.9	8	85	14	55	2	12	0	85	0.71
18611614--18611663	22	2.5	19	77	22	57	46	22	6	26	1.74
18611622--18611664	22	2.0	22	90	9	70	48	20	4	25	1.69
18614667--18614710	23	1.9	23	85	0	61	50	6	9	34	1.61
18615792--18615817	3	8.7	3	100	0	52	69	0	0	30	0.89
18616334--18616538	43	4.9	43	74	9	145	31	17	24	26	1.97
18616506--18616560	22	2.5	21	74	8	56	30	20	21	27	1.98
18619254--18619306	8	6.9	8	80	8	56	50	5	3	39	1.44
18619254--18619300	10	4.7	10	89	0	58	51	6	2	40	1.39
18619256--18619311	6	9.3	6	90	0	67	50	3	5	41	1.43
18619826--18619927	49	2.1	50	87	5	145	37	5	6	50	1.54
18620295--18620346	27	1.9	27	96	0	95	63	0	1	34	1.06
18622258--18622289	12	2.4	14	90	10	50	65	3	3	28	1.23
18622692--18622752	30	2.0	30	83	0	77	37	11	4	45	1.62
18622770--18622860	29	3.1	28	77	14	96	60	5	3	30	1.35
18622777--18622874	29	3.3	29	76	12	92	57	6	3	33	1.39
18623686--18623725	2	20.0	2	100	0	80	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18627307--18627352	24	1.9	24	95	0	83	19	8	17	54	1.68
18631969--18632010	20	2.1	20	95	0	75	9	16	19	54	1.69
18635264--18635577	158	2.0	155	93	3	533	30	14	10	43	1.80
18637751--18637800	22	2.3	22	89	3	75	30	4	18	48	1.66
18645172--18645205	17	2.0	17	100	0	68	23	0	41	35	1.55
18657292--18657343	22	2.4	22	80	3	61	21	5	1	71	1.17
18657511--18657759	135	1.8	135	87	0	372	32	17	10	39	1.83
18657858--18657892	18	1.9	18	100	0	70	57	0	0	42	0.99
18659757--18659823	3	22.3	3	100	0	134	34	0	0	65	0.93
18660143--18660187	18	2.5	19	79	13	51	24	0	2	73	0.95
18660606--18660663	14	4.4	14	71	20	61	72	0	5	22	1.04
18660605--18660658	20	2.7	20	78	16	58	72	0	5	22	1.05
18661533--18661572	3	13.3	3	94	0	71	67	2	0	30	1.04
18661533--18661580	9	5.3	9	94	0	60	64	4	2	29	1.23
18666670--18666969	144	2.1	145	81	4	351	34	13	12	40	1.81
18671901--18671932	2	16.0	2	100	0	64	50	0	0	50	1.00
18673122--18673159	20	1.9	19	89	5	58	42	0	0	57	0.98
18673450--18673488	11	3.5	11	86	13	53	30	2	2	64	1.21
18673768--18673819	18	2.9	17	80	11	59	51	1	3	42	1.31
18673768--18673821	19	2.8	19	75	8	56	50	1	5	42	1.36
18673871--18673930	25	2.4	25	83	8	86	48	1	0	50	1.11
18673898--18673956	15	3.8	16	77	6	68	49	3	0	47	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18673902--18673956	16	3.6	15	78	9	58	49	3	0	47	1.19
18673905--18673973	31	2.2	31	82	5	77	52	2	1	43	1.25
18673944--18673999	21	2.8	20	86	5	69	55	0	1	42	1.10
18674838--18674888	7	7.6	7	85	12	63	23	0	1	74	0.92
18675612--18675636	7	3.6	7	100	0	50	84	0	0	16	0.63
18676856--18676913	29	2.0	29	83	6	73	50	5	8	36	1.56
18680879--18680936	30	1.9	30	82	0	71	20	12	29	37	1.89
18690071--18690111	20	2.0	21	90	4	66	51	2	0	46	1.14
18690069--18690127	12	5.2	12	73	19	54	52	1	0	45	1.10
18701383--18701704	62	5.2	63	76	11	229	37	12	13	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113