genome.fa.s68.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  72  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16466566--16467791	71	17.7	69	71	10	317	52	11	16	19	1.74
16467004--16467192	93	2.0	93	98	0	369	58	8	14	19	1.61
16468450--16468728	101	2.7	103	86	5	395	46	13	18	21	1.83
16470870--16470918	24	2.0	24	88	0	71	53	14	16	16	1.74
16471292--16471356	29	2.2	29	83	5	78	47	7	21	23	1.76
16471198--16471392	64	2.9	64	82	8	205	49	11	18	21	1.78
16472348--16472566	120	1.8	121	82	4	282	53	13	15	16	1.72
16474502--16474736	103	2.2	104	79	10	241	53	11	15	19	1.73
16475319--16475663	71	4.9	70	73	13	216	53	14	14	17	1.72
16472657--16501138	176	163.1	172	70	12	2767	52	12	15	19	1.75
16476859--16477112	135	1.9	134	80	8	293	53	12	16	18	1.73
16477151--16477271	41	3.0	41	78	7	133	55	13	11	19	1.68
16477874--16478266	107	3.7	104	73	6	268	53	11	15	19	1.72
16479285--16479470	102	1.8	102	82	9	245	52	12	17	17	1.75
16479700--16480218	177	3.0	173	77	5	497	50	11	16	20	1.76
16480210--16480326	30	3.6	31	72	12	110	56	14	11	17	1.67
16480832--16481085	135	1.9	135	82	6	318	48	11	17	23	1.79
16485615--16485672	18	3.2	18	72	18	57	56	8	17	17	1.64
16485690--16485740	15	2.9	17	71	23	52	60	13	9	15	1.58
16487174--16487723	142	3.9	140	76	5	387	53	10	16	19	1.72
16488647--16488886	129	1.9	128	79	4	277	51	10	16	21	1.74
16489862--16490053	100	1.9	100	88	0	285	51	12	16	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16491744--16492015	142	1.9	141	81	6	327	52	12	16	18	1.74
16491780--16491979	107	1.9	107	80	6	235	53	12	16	17	1.73
16491889--16492150	136	1.9	136	83	1	337	51	11	15	22	1.75
16491502--16492194	177	4.0	173	76	7	535	52	12	15	19	1.74
16495420--16495713	102	2.8	104	81	6	344	54	12	12	20	1.70
16495008--16495830	243	3.4	242	77	7	632	54	11	13	20	1.70
16496228--16496492	102	2.6	102	80	9	261	53	10	13	21	1.70
16496410--16496593	100	1.8	101	81	9	234	55	9	14	19	1.66
16496421--16496547	64	2.0	65	84	9	172	55	11	14	19	1.69
16496813--16497081	100	2.6	104	78	8	273	52	8	16	22	1.71
16498690--16498784	20	5.3	19	63	22	53	54	10	12	22	1.68
16499184--16499460	106	2.7	105	79	5	260	53	10	14	22	1.71
16501533--16501574	10	4.2	10	82	17	52	57	2	0	40	1.12
16501505--16501574	29	2.4	28	81	13	72	55	4	0	40	1.19
16501571--16501649	32	2.6	30	82	11	90	41	1	6	50	1.36
16501576--16501649	29	2.4	32	84	10	93	41	1	5	51	1.33
16501695--16501731	15	2.5	15	100	0	74	40	0	5	54	1.24
16501893--16501955	20	3.4	19	70	18	60	53	0	4	41	1.22
16502770--16502841	15	4.7	15	74	17	53	51	2	0	45	1.15
16503001--16503069	31	2.3	31	82	10	88	44	2	1	50	1.25
16503183--16503220	19	2.1	18	85	14	51	52	5	2	39	1.38
16503412--16503481	29	2.4	29	80	7	79	50	2	0	47	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16503490--16503542	17	3.1	17	79	12	56	54	1	0	43	1.11
16503492--16503547	22	2.6	23	86	8	73	55	1	0	42	1.10
16503829--16503913	23	3.7	22	72	21	68	51	0	2	45	1.13
16504034--16504635	180	3.4	179	78	6	494	40	6	9	43	1.63
16504965--16505044	28	2.7	29	79	12	74	48	2	2	46	1.29
16506392--16506434	18	2.5	17	85	14	61	44	4	2	48	1.36
16506898--16506938	16	2.5	17	88	7	59	39	0	2	58	1.11
16507096--16507133	17	2.2	18	85	4	51	47	0	0	52	1.00
16507164--16507213	20	2.4	21	80	6	57	44	2	2	52	1.24
16507191--16507233	11	3.8	11	84	6	59	53	0	2	44	1.13
16507220--16507258	16	2.4	16	86	0	60	48	0	0	51	1.00
16508125--16508174	19	2.5	20	81	9	59	50	0	0	50	1.00
16508157--16508186	12	2.4	13	94	5	53	50	0	0	50	1.00
16508316--16508366	3	17.0	3	100	0	102	66	0	0	33	0.92
16508728--16508759	14	2.3	14	94	0	55	53	9	0	37	1.34
16508979--16509039	25	2.4	26	76	20	67	49	4	0	45	1.23
16509188--16509226	19	2.0	20	85	5	53	53	2	0	43	1.14
16509903--16509958	19	3.1	18	76	20	55	51	3	0	44	1.18
16509907--16509954	19	2.5	20	80	16	57	54	4	0	41	1.20
16509949--16509992	19	2.3	19	80	7	54	54	4	0	40	1.21
16510072--16510110	10	3.9	10	87	9	53	53	0	0	46	1.00
16510025--16510113	14	6.4	14	73	12	67	53	2	1	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16511062--16511088	14	1.9	14	100	0	54	51	0	3	44	1.19
16511162--16511211	9	5.7	9	76	4	57	48	4	0	48	1.20
16511152--16511212	26	2.3	25	81	10	68	50	3	0	45	1.17
16511492--16511586	7	13.9	7	72	20	60	44	1	1	53	1.14
16511672--16511728	21	2.7	21	75	0	60	47	1	0	50	1.11
16512171--16512204	16	2.1	16	94	0	59	47	0	0	52	1.00
16512253--16512293	14	3.1	14	83	13	52	48	0	0	51	1.00
16513780--16515320	181	8.7	176	74	8	991	40	10	8	40	1.70
16513781--16515042	537	2.4	535	79	6	1281	41	11	7	39	1.70
16515568--16515624	24	2.3	26	82	11	75	49	3	5	42	1.42
16515626--16515660	17	2.1	17	94	0	61	48	0	0	51	1.00
16515782--16515856	15	4.9	15	71	18	64	45	1	5	48	1.33
16516152--16516220	30	2.3	31	85	10	97	46	2	0	50	1.16
16516331--16516371	16	2.4	18	81	18	52	51	7	2	39	1.43
16516642--16516694	17	3.1	17	79	12	56	54	1	0	43	1.11
16516644--16516699	22	2.6	23	86	8	73	55	1	0	42	1.10
16519638--16519664	9	3.0	9	100	0	54	44	0	0	55	0.99
16519675--16519703	9	3.3	9	95	4	51	48	0	6	44	1.29
16521646--16521697	20	2.6	19	79	8	59	42	3	5	48	1.45
16521891--16521981	41	2.2	43	81	13	120	48	0	0	51	1.00
16521918--16521963	16	2.8	16	86	3	65	50	0	0	50	1.00
16522748--16522780	15	2.2	15	94	0	57	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16522751--16522788	20	1.9	20	88	0	58	52	0	0	47	1.00
16522793--16522842	14	3.6	14	76	15	50	50	0	0	50	1.00
16522804--16522859	19	3.1	19	73	14	55	51	0	0	48	1.00
16522822--16522860	15	2.5	15	83	4	51	48	0	0	51	1.00
16522836--16522865	12	2.4	13	94	5	53	50	0	0	50	1.00
16522999--16523038	3	13.0	3	89	5	62	62	0	2	35	1.09
16523048--16523103	17	3.4	16	76	16	53	48	0	0	51	1.00
16523034--16523103	31	2.3	32	80	9	83	45	0	1	52	1.09
16523049--16523096	23	2.1	23	88	7	71	47	0	0	52	1.00
16523041--16523108	25	2.8	23	82	17	77	45	0	1	52	1.09
16523624--16523684	25	2.4	26	76	20	67	49	4	0	45	1.23
16523833--16523871	19	2.0	20	85	5	53	53	2	0	43	1.14
16524552--16524607	19	3.1	18	76	20	55	51	3	0	44	1.18
16524556--16524603	19	2.5	20	80	16	57	54	4	0	41	1.20
16524598--16524641	19	2.3	19	80	7	54	54	4	0	40	1.21
16525426--16525475	24	2.0	25	84	3	66	48	0	2	50	1.12
16525533--16525590	28	2.0	29	83	9	75	62	3	1	32	1.22
16525798--16525847	9	5.7	9	76	4	57	50	2	2	46	1.24
16525788--16525848	27	2.3	25	81	10	68	52	1	1	44	1.20
16526125--16526241	6	19.0	6	70	20	66	47	0	1	49	1.17
16526125--16526230	55	1.9	56	85	12	148	48	0	0	50	1.13
16526138--16526215	31	2.5	31	78	14	72	47	0	1	51	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16526094--16526242	62	2.4	61	77	17	139	45	0	2	51	1.20
16526343--16526394	16	3.6	15	80	15	56	48	0	0	51	1.00
16526333--16526394	13	4.5	13	77	16	54	46	1	0	51	1.10
16526346--16526407	22	2.9	21	81	13	72	48	1	0	50	1.10
16527459--16528100	177	3.6	176	76	9	500	43	9	7	39	1.65
16526994--16528407	180	7.9	179	72	9	815	43	10	7	39	1.66
16528511--16529472	179	5.4	177	76	6	768	41	11	7	40	1.68
16529175--16529207	17	1.9	17	88	11	50	42	9	6	42	1.61
16528508--16529472	177	5.4	177	75	8	646	41	11	7	40	1.68
16528508--16529472	357	2.7	350	79	7	1032	41	11	7	40	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113