genome.fa.s68.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  18  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6212566--6212613	9	5.6	9	76	18	57	85	2	10	2	0.77
6212560--6212613	17	3.2	16	82	12	72	83	1	11	3	0.85
6213012--6213053	22	2.0	21	81	13	50	80	0	11	7	0.88
6214395--6214662	79	3.4	78	85	2	356	40	8	14	35	1.78
6214550--6214790	122	2.0	122	86	0	338	41	9	12	36	1.76
6214178--6214711	21	25.9	21	69	13	240	39	8	14	36	1.77
6214669--6214827	79	2.0	82	86	3	225	38	10	16	35	1.82
6214741--6214788	20	2.3	20	82	13	62	41	10	10	37	1.74
6215330--6215487	43	3.6	44	74	4	133	27	10	13	48	1.75
6217164--6217211	23	2.1	23	100	0	96	62	0	0	37	0.95
6217421--6217481	2	32.0	2	77	9	65	54	0	3	42	1.17
6217423--6217480	29	2.0	29	89	3	73	55	0	3	41	1.17
6217421--6217481	17	3.6	18	82	8	74	54	0	3	42	1.17
6217725--6217786	5	11.6	5	77	19	63	19	1	1	77	0.94
6217735--6217783	13	3.7	14	81	10	50	18	2	2	77	0.96
6217725--6217786	27	2.3	27	83	8	81	19	1	1	77	0.94
6217736--6217793	27	2.1	27	81	6	64	22	1	3	72	1.09
6218050--6218103	21	2.5	22	79	11	58	25	3	12	57	1.52
6218808--6219030	60	4.0	54	81	13	256	44	3	11	40	1.56
6218862--6219081	58	3.7	59	81	9	248	45	4	12	38	1.62
6218790--6219077	118	2.5	111	85	8	355	46	3	10	39	1.56
6221903--6221947	21	2.1	21	84	8	56	75	6	0	17	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6223200--6223340	61	2.2	65	79	12	159	41	1	1	55	1.17
6230015--6230053	20	1.9	21	89	5	62	46	5	30	17	1.70
6231522--6231554	2	17.0	2	93	6	59	48	0	0	51	1.00
6231672--6231701	15	1.9	16	93	6	53	20	6	13	60	1.55
6236935--6236997	26	2.5	25	73	19	58	26	1	3	68	1.14
6237181--6237211	14	2.2	14	94	0	53	25	0	3	70	1.02
6238638--6239002	48	7.7	48	82	8	383	41	18	10	29	1.84
6238986--6239017	15	2.2	15	94	5	57	53	9	6	31	1.58
6238937--6239066	62	2.1	63	91	4	210	43	15	11	29	1.82
6238999--6239494	47	10.1	48	78	8	435	43	18	10	28	1.82
6238999--6239494	95	5.0	95	80	6	456	43	18	10	28	1.82
6239307--6239510	107	1.9	105	82	5	248	43	18	9	28	1.81
6239716--6240074	75	4.8	75	83	4	429	42	20	13	24	1.87
6239704--6240074	150	2.5	150	85	1	503	42	20	12	24	1.87
6240035--6240154	40	3.0	40	83	7	163	46	15	20	16	1.84
6240137--6240314	42	4.2	42	78	1	196	39	23	12	25	1.89
6240133--6240332	84	2.4	84	83	3	251	40	21	13	25	1.89
6240699--6240788	35	2.6	35	78	5	94	33	11	15	40	1.83
6246491--6246541	24	2.2	24	82	10	61	27	0	3	68	1.07
6246718--6246748	14	2.2	14	94	0	53	25	0	3	70	1.02
6255625--6255742	39	3.0	39	96	0	209	38	17	13	29	1.88
6257433--6257483	25	1.9	26	84	11	68	49	0	1	49	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6257531--6257987	63	7.4	58	69	16	192	45	7	6	40	1.58
6257784--6257986	61	3.3	61	75	14	159	49	8	4	37	1.55
6263206--6263246	21	2.0	21	85	0	55	46	4	0	48	1.23
6264608--6264649	13	3.4	13	77	12	52	57	2	0	40	1.12
6265701--6265743	19	2.3	19	88	8	61	41	0	0	58	0.98
6266669--6266706	16	2.4	16	87	12	53	26	0	5	68	1.11
6268241--6268299	25	2.3	26	80	11	68	47	6	3	42	1.46
6282404--6282434	3	10.3	3	100	0	62	0	35	0	64	0.94
6290406--6290451	23	2.0	23	91	0	74	26	26	2	45	1.65
6291637--6291702	35	1.9	35	90	3	107	39	21	3	36	1.69
6292098--6292166	33	2.2	33	82	12	92	60	10	0	28	1.29
6296011--6296281	148	1.8	149	81	8	336	17	37	25	19	1.93
6298863--6299371	253	2.0	253	100	0	1018	34	23	13	28	1.93
6310995--6311053	12	5.0	12	75	2	57	57	3	1	37	1.25
6311040--6311085	23	1.9	25	91	8	78	52	0	4	43	1.21
6330765--6330829	30	2.2	30	91	5	105	56	0	6	36	1.24
6330742--6330869	23	5.3	23	71	16	82	60	0	3	35	1.21
6330807--6330888	20	3.8	21	76	13	69	62	0	4	32	1.17
6330775--6330877	54	1.9	54	80	4	118	59	0	4	35	1.19
6338783--6338834	15	3.1	18	73	18	58	65	0	0	34	0.93
6338920--6338952	10	3.3	10	87	12	50	36	0	0	63	0.95
6338920--6338964	19	2.3	20	84	3	56	37	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6339686--6339756	30	2.4	29	88	6	99	26	5	11	56	1.56
6343513--6343951	221	2.0	222	89	1	684	29	14	16	39	1.88
6360916--6360946	8	3.9	8	95	0	53	38	32	12	16	1.86
6361867--6361898	2	16.0	2	100	0	64	50	0	0	50	1.00
6366219--6366258	2	20.0	2	94	0	71	50	2	0	47	1.14
6368174--6368213	18	2.2	18	91	8	64	15	10	2	72	1.21
6369092--6369172	39	2.1	39	90	0	126	20	11	6	61	1.50
6371852--6372239	193	2.0	193	94	0	686	37	13	15	32	1.87
6377229--6377312	23	3.6	22	71	23	73	73	2	2	21	1.06
6377231--6377305	15	5.1	15	75	16	68	73	2	2	21	1.08
6378220--6378479	21	12.1	21	71	18	157	37	13	9	40	1.76
6378218--6378394	21	7.7	25	76	13	161	37	12	10	40	1.77
6378218--6378392	71	2.6	67	85	8	253	37	12	9	40	1.76
6378218--6378394	46	3.9	47	80	10	197	37	12	10	40	1.77
6378317--6378472	78	2.0	80	85	5	217	35	14	8	41	1.76
6379712--6379759	19	2.3	21	86	13	73	4	20	0	75	0.97
6386669--6386693	10	2.5	10	100	0	50	60	8	0	32	1.26
6390361--6390493	12	11.3	12	76	15	84	35	4	3	56	1.38
6390405--6390513	3	37.3	3	82	12	111	31	3	1	63	1.22
6390438--6390524	20	3.8	24	80	14	73	27	1	2	68	1.08
6391310--6391390	18	4.6	18	70	20	64	18	4	3	72	1.17
6391310--6391390	17	4.6	19	69	26	61	18	4	3	72	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6391310--6391375	25	2.7	25	79	13	75	16	6	4	72	1.21
6391354--6391406	22	2.3	23	84	12	74	16	3	1	77	1.01
6396537--6396571	5	7.2	5	87	6	54	57	2	0	40	1.14
6396682--6396753	29	2.5	30	76	15	87	37	8	0	54	1.31
6396794--6396867	30	2.4	31	86	2	96	50	1	9	39	1.44
6398977--6399018	22	1.9	22	90	9	68	61	4	4	28	1.36
6404781--6404814	17	2.0	17	88	11	52	41	5	23	29	1.78
6406170--6406271	51	2.0	51	83	9	127	22	29	19	28	1.98
6406173--6406273	26	3.9	26	79	7	109	23	27	19	28	1.99
6406289--6406337	25	2.0	25	83	0	62	32	6	4	57	1.42
6407182--6407225	19	2.3	19	88	0	61	18	4	4	72	1.19
6407190--6407232	19	2.2	20	91	4	70	18	0	4	76	0.95
6407415--6407450	18	2.1	18	89	5	56	61	11	0	27	1.30
6407811--6407850	20	2.0	20	100	0	80	30	10	30	30	1.90
6409081--6409114	2	17.0	2	100	0	68	50	0	0	50	1.00
6410630--6410662	2	16.5	2	93	0	57	48	0	0	51	1.00
6411874--6411925	27	1.9	27	84	0	68	36	3	57	1	1.28
6413041--6413104	32	2.0	32	100	0	128	21	18	3	56	1.56
6416338--6416393	25	2.2	25	87	6	78	53	0	0	46	1.00
6430182--6430222	21	2.0	21	85	0	55	17	34	12	36	1.87
6434085--6434457	117	3.2	116	77	7	263	34	13	35	16	1.88
6434148--6434436	117	2.5	117	80	5	300	34	11	34	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6441922--6441972	25	2.0	25	92	0	84	37	7	11	43	1.71
6448192--6448244	21	2.6	21	88	11	83	47	0	0	52	1.00
6448192--6448243	22	2.5	22	93	6	90	48	0	0	51	1.00
6448560--6448604	2	22.5	2	100	0	90	51	0	0	48	1.00
6454106--6454163	29	2.0	29	93	0	98	43	15	5	36	1.69
6454370--6454425	26	2.2	26	87	9	80	55	3	1	39	1.28
6454615--6454722	55	1.9	56	88	1	164	40	21	13	24	1.89
6458066--6458095	6	5.0	6	100	0	60	16	50	16	16	1.79
6458610--6458642	17	2.1	16	88	11	50	48	0	0	51	1.00
6459506--6459554	18	2.8	17	78	6	53	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113