genome.fa.s68.2.7.7.80.10.50.1000.56.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  56  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14069035--14069267	118	2.0	118	84	8	312	33	10	7	47	1.67
14069659--14069697	20	2.0	20	85	10	53	7	38	2	51	1.44
14070039--14070064	7	3.7	7	100	0	52	73	15	0	11	1.11
14070748--14070830	34	2.4	32	77	15	76	44	12	13	30	1.80
14070767--14070821	17	3.2	17	71	0	56	43	12	10	32	1.78
14070776--14070963	17	11.0	17	68	2	99	39	13	15	30	1.87
14070767--14070963	34	5.8	34	78	3	171	40	13	15	30	1.86
14070914--14070974	17	3.6	17	69	8	52	31	14	18	36	1.91
14070953--14071089	34	4.0	34	75	1	105	37	10	19	32	1.87
14070914--14071014	51	2.0	51	82	3	123	34	11	17	35	1.87
14070944--14071009	17	3.9	17	69	0	51	33	9	18	39	1.82
14070936--14071089	68	2.3	69	85	2	188	37	11	18	32	1.87
14071004--14071089	17	5.1	17	65	10	50	39	12	19	27	1.88
14072252--14072324	17	4.4	16	75	17	60	12	9	0	78	0.98
14072258--14072324	9	7.7	9	76	18	70	11	10	0	77	0.99
14073170--14073347	89	2.0	88	91	1	284	49	9	11	29	1.71
14076304--14076550	121	2.1	118	87	4	352	36	10	5	47	1.62
14076305--14076547	60	4.1	60	88	1	337	35	10	5	48	1.61
14078006--14078054	22	2.2	22	82	13	57	22	0	16	61	1.34
14080063--14080098	19	1.9	20	88	11	58	66	0	0	33	0.92
14080063--14080101	17	2.2	18	86	13	55	66	0	0	33	0.92
14080166--14080215	25	2.0	25	84	0	64	36	12	20	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14082483--14082520	16	2.4	17	86	8	53	71	2	0	26	1.00
14082494--14082544	20	2.5	19	82	17	59	70	1	0	27	0.98
14082495--14082544	21	2.4	21	81	18	61	70	2	0	28	0.99
14082488--14082552	19	3.5	19	74	14	57	64	3	0	32	1.09
14086885--14086915	2	15.5	2	100	0	62	48	0	0	51	1.00
14092072--14092107	3	12.0	3	93	0	63	30	0	2	66	1.06
14092896--14092965	12	5.8	12	78	9	70	45	8	2	42	1.49
14092889--14092966	2	39.5	2	71	2	59	46	7	2	43	1.46
14094383--14094426	20	2.1	20	87	8	61	50	2	2	45	1.27
14094382--14094433	27	1.9	27	88	7	79	48	3	1	46	1.31
14094754--14094785	3	10.7	3	100	0	64	68	0	0	31	0.90
14095449--14095484	16	2.2	17	90	5	56	63	5	0	30	1.17
14096359--14096391	15	2.1	16	88	5	50	42	0	6	51	1.26
14096466--14096509	23	2.0	22	86	4	61	47	6	4	40	1.50
14096591--14096633	21	2.0	21	82	8	52	69	9	2	18	1.26
14097251--14097303	21	2.5	21	77	17	56	54	3	0	41	1.18
14104288--14104314	2	13.5	2	100	0	54	51	0	0	48	1.00
14112145--14112180	1	36.0	1	88	0	54	94	5	0	0	0.31
14125431--14125489	24	2.4	24	83	8	66	25	3	1	69	1.13
14125609--14125655	18	2.8	17	78	12	53	31	2	10	55	1.46
14126103--14126145	22	2.0	22	86	9	61	37	4	2	55	1.33
14128421--14128481	29	2.1	28	96	0	86	52	19	4	22	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14128421--14128475	17	3.5	17	76	23	75	49	21	5	23	1.70
14128430--14128506	12	5.8	12	69	21	55	50	15	6	27	1.68
14128426--14128524	27	3.6	26	80	5	108	49	16	7	27	1.71
14128660--14128697	20	1.9	20	94	0	67	50	13	5	31	1.63
14128670--14128737	20	3.4	20	77	0	64	52	10	2	33	1.50
14128803--14128847	20	2.2	20	88	0	63	46	8	6	37	1.61
14130382--14130416	18	2.1	16	89	10	52	68	5	0	25	1.11
14130404--14130452	20	2.4	20	82	3	62	65	14	2	18	1.37
14135459--14135513	21	2.7	20	94	2	92	21	23	14	40	1.90
14139793--14139866	36	2.1	36	82	10	89	33	9	9	47	1.68
14140207--14140355	22	6.9	21	75	9	104	36	8	10	44	1.69
14140207--14140310	43	2.4	44	80	7	124	36	8	9	45	1.68
14140329--14140397	22	3.1	22	75	4	68	42	4	5	47	1.47
14140403--14140520	22	5.4	22	74	4	85	37	11	6	44	1.66
14140403--14140518	44	2.6	44	73	0	106	37	11	6	44	1.67
14152161--14152517	51	7.1	52	74	9	251	28	12	16	42	1.84
14152282--14152377	43	2.3	42	83	7	131	26	14	16	42	1.87
14152215--14152484	146	1.8	146	81	6	332	30	11	15	42	1.83
14152338--14152522	52	3.6	53	78	6	193	28	12	17	42	1.85
14154015--14154050	18	2.1	18	90	10	58	69	0	2	27	1.02
14154145--14154228	10	8.2	10	76	19	52	77	10	1	10	1.05
14154163--14154228	17	4.1	16	79	13	64	80	9	0	10	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14154162--14154227	33	2.0	33	82	11	82	78	10	0	10	0.96
14154191--14154228	18	2.1	19	85	5	51	84	10	0	5	0.77
14155207--14155258	18	2.8	19	78	18	65	25	0	3	71	1.03
14155648--14155681	17	2.0	17	88	0	50	47	35	0	17	1.48
14166320--14166354	17	2.1	17	94	0	61	25	5	5	62	1.40
14171811--14171852	8	5.5	8	77	11	52	73	11	2	11	1.18
14171811--14171852	15	2.8	15	81	0	57	73	11	2	11	1.18
14172686--14172714	13	2.3	13	94	5	51	79	6	0	13	0.93
14174505--14174685	22	8.3	22	69	12	104	49	7	8	34	1.61
14174527--14174622	44	2.2	44	86	0	129	46	5	12	35	1.64
14174617--14174664	24	2.1	22	85	14	62	54	12	4	29	1.56
14174786--14174914	22	6.0	22	72	8	95	46	6	12	34	1.67
14174826--14174914	44	2.0	44	82	4	108	44	5	11	38	1.64
14175047--14175099	22	2.4	22	84	6	63	49	3	11	35	1.57
14175061--14175110	22	2.3	22	86	6	66	50	4	10	36	1.55
14175136--14175210	22	3.4	22	70	7	71	50	4	12	33	1.58
14175301--14175554	22	11.5	22	71	6	86	45	8	9	37	1.67
14176192--14176288	15	6.3	15	74	11	65	17	4	29	48	1.66
14176192--14176328	8	17.5	8	65	13	61	16	4	30	48	1.65
14176192--14176288	46	2.1	46	83	7	117	17	4	29	48	1.66
14176277--14176330	17	3.2	17	78	5	56	14	3	29	51	1.60
14182533--14182577	21	2.1	21	83	0	54	35	0	11	53	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14187756--14187804	15	3.3	15	85	8	64	32	4	0	63	1.13
14187706--14187852	71	2.1	70	82	10	183	39	3	0	56	1.21
14189470--14189533	26	2.5	26	81	16	73	15	3	6	75	1.14
14190536--14190601	23	2.9	23	83	0	78	31	18	19	30	1.96
14190492--14190682	52	3.8	50	71	13	124	30	16	20	32	1.95
14190543--14190660	23	4.9	23	71	17	87	30	17	20	31	1.96
14190683--14190742	30	2.0	31	83	3	77	33	21	13	31	1.92
14193991--14194084	44	2.1	44	84	3	127	50	6	5	38	1.51
14194011--14194086	22	3.5	22	66	0	53	52	3	5	38	1.43
14194383--14194432	22	2.3	22	89	6	75	50	8	16	26	1.72
14194670--14194704	3	12.0	3	90	6	54	28	0	0	71	0.86
14197925--14198095	33	5.2	33	67	17	84	28	15	21	35	1.93
14197840--14198314	134	3.6	128	80	6	465	26	14	21	37	1.92
14207574--14207625	22	2.3	23	96	3	97	34	3	15	46	1.64
14208382--14208422	13	2.9	15	75	14	50	17	4	24	53	1.63
14208319--14208450	40	3.3	39	69	18	119	20	9	28	41	1.84
14208427--14208481	25	2.2	25	83	3	67	27	10	23	38	1.88
14208131--14208456	79	4.2	79	85	3	419	23	9	24	42	1.83
14211841--14212481	303	2.1	301	80	5	736	36	16	13	32	1.88
14214443--14214484	21	2.0	21	95	0	75	54	2	0	42	1.13
14214668--14214769	20	5.0	20	78	12	118	33	8	7	50	1.63
14214664--14214768	10	10.3	10	74	11	88	35	7	7	49	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14214668--14214769	41	2.5	41	78	13	120	33	8	7	50	1.63
14214999--14215310	158	2.0	158	83	2	394	35	17	15	31	1.91
14215294--14215591	120	2.5	121	76	6	298	40	14	11	33	1.82
14215346--14215628	120	2.4	120	78	5	279	40	12	13	34	1.81
14215575--14215699	60	2.1	59	82	10	148	46	8	16	28	1.76
14215772--14216189	182	2.3	181	80	6	482	38	13	13	33	1.85
14216163--14216248	43	2.0	43	97	0	163	48	15	13	22	1.79
14217555--14217625	34	2.1	34	91	0	115	30	18	9	40	1.83
14217832--14217896	21	3.1	21	82	2	69	36	4	10	47	1.59
14217904--14217944	21	2.0	21	85	9	57	39	4	7	48	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113