genome.fa.s68.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  35  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10469445--10469487	16	2.7	16	88	0	59	39	27	2	30	1.69
10469627--10469795	29	5.8	29	75	10	157	49	27	0	23	1.55
10469625--10469736	13	7.9	13	68	15	53	50	26	0	22	1.49
10469684--10469736	14	3.7	14	76	14	63	56	26	0	16	1.41
10469773--10469841	13	4.9	14	72	11	52	53	33	0	13	1.39
10469815--10469857	22	1.9	23	85	4	61	53	30	0	16	1.43
10469892--10469940	7	6.7	7	78	17	55	57	26	0	16	1.40
10469899--10469956	15	3.8	16	84	6	75	56	25	0	17	1.40
10469863--10469957	16	6.0	16	73	11	70	53	25	0	21	1.46
10476507--10476545	16	2.4	16	91	4	60	89	7	0	2	0.56
10478273--10478314	22	1.9	22	90	0	66	30	14	16	38	1.89
10478308--10478534	110	2.1	110	85	6	300	24	18	15	41	1.89
10478484--10478543	22	2.7	22	84	2	75	30	20	15	35	1.93
10478492--10478557	22	3.0	22	78	8	71	31	21	13	33	1.92
10478418--10478664	132	1.9	130	85	5	345	23	18	17	40	1.91
10478267--10478740	240	2.0	242	85	1	639	23	18	16	41	1.90
10478550--10478753	108	1.9	110	83	2	268	19	19	18	42	1.89
10478410--10479082	329	2.0	328	86	1	927	23	18	16	41	1.90
10478842--10479104	110	2.4	110	80	1	305	25	18	16	39	1.91
10478985--10479224	132	1.8	132	83	5	324	25	19	15	39	1.91
10478763--10479365	242	2.5	242	79	2	575	25	19	16	39	1.91
10479076--10479332	110	2.3	110	80	4	270	25	21	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10479296--10479376	22	3.7	21	77	8	72	29	18	16	35	1.92
10479623--10479647	3	8.3	3	100	0	50	68	0	0	32	0.90
10480849--10480896	20	2.5	20	80	6	55	70	0	0	29	0.87
10481209--10481263	16	3.7	16	81	18	82	50	29	0	20	1.48
10481205--10481299	28	3.4	28	91	1	136	49	26	1	23	1.57
10481205--10481275	12	5.2	12	75	22	61	53	25	0	21	1.46
10481205--10481319	28	4.1	29	87	4	85	48	27	0	22	1.56
10481310--10481386	30	2.7	29	83	4	102	46	31	2	19	1.63
10481337--10481439	46	2.2	46	82	0	125	45	28	2	23	1.67
10481451--10481511	14	4.4	14	77	6	70	54	26	0	19	1.45
10481592--10481738	16	9.7	15	76	14	74	45	31	0	21	1.57
10481556--10481739	30	6.2	29	75	9	124	45	32	1	20	1.58
10481609--10481687	14	5.5	14	74	16	81	51	31	0	16	1.44
10481697--10481786	45	2.0	45	82	8	112	44	26	2	26	1.66
10481778--10481849	22	3.3	22	69	11	58	51	31	2	13	1.56
10481772--10481863	14	6.4	14	70	9	60	52	32	2	13	1.52
10481845--10481923	41	1.9	41	87	5	115	54	22	0	22	1.45
10498656--10498681	2	13.0	2	100	0	52	50	0	0	50	1.00
10498681--10498708	2	14.0	2	100	0	56	50	0	50	0	1.00
10505173--10505230	25	2.3	24	82	11	64	41	1	1	55	1.20
10505453--10505485	14	2.4	14	90	10	50	66	0	3	30	1.06
10514842--10514876	13	2.6	14	86	9	54	65	2	0	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10516395--10516446	16	3.6	16	65	24	51	55	3	0	40	1.18
10516391--10516465	27	2.9	26	88	5	109	58	2	0	38	1.12
10516858--10516904	12	3.5	13	75	16	51	59	0	2	38	1.09
10517244--10517280	2	18.5	2	100	0	74	48	0	0	51	1.00
10517881--10517915	17	2.1	17	88	0	52	37	0	2	60	1.12
10517943--10518022	25	3.1	24	74	16	72	50	1	0	48	1.08
10517943--10518027	23	3.2	27	70	16	79	50	1	0	48	1.08
10517969--10518032	27	2.5	25	78	9	65	51	1	0	46	1.10
10519930--10519984	9	6.1	9	78	0	56	43	5	1	49	1.36
10523030--10523070	17	2.6	16	82	17	50	82	4	0	12	0.81
10524596--10524637	14	3.2	13	86	6	50	71	0	0	28	0.86
10524887--10524934	24	2.0	24	84	8	62	66	4	0	29	1.10
10530656--10530699	21	2.1	21	82	0	52	27	0	11	61	1.30
10530906--10530970	34	1.9	34	93	0	112	43	7	7	41	1.62
10531284--10531316	16	2.1	16	100	0	66	33	0	24	42	1.55
10531780--10531818	21	1.9	19	85	10	51	61	0	10	28	1.28
10534856--10534889	13	2.7	13	90	4	52	55	0	2	41	1.15
10534857--10534890	6	5.5	6	86	6	50	52	0	2	44	1.16
10537712--10537741	15	2.0	15	93	0	51	30	23	0	46	1.52
10540177--10540227	26	2.0	26	84	3	68	45	0	3	50	1.20
10540349--10540438	44	2.0	44	81	8	103	45	3	3	47	1.35
10540407--10540449	17	2.7	16	89	10	70	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10540578--10540708	39	3.1	43	80	12	116	51	2	1	45	1.23
10541722--10541768	22	2.3	22	89	10	73	55	0	0	44	0.99
10541746--10541812	31	2.2	30	84	7	82	53	1	1	43	1.19
10541751--10541975	14	15.6	15	67	23	87	52	2	1	43	1.24
10541833--10542027	13	14.5	13	68	20	73	55	1	1	42	1.16
10541993--10542040	20	2.4	20	89	6	71	54	2	2	41	1.24
10542234--10542281	17	2.8	16	76	14	51	52	0	0	47	1.00
10546693--10546835	32	4.6	32	75	12	111	48	1	0	48	1.15
10546714--10546773	20	3.0	20	75	4	59	48	0	0	51	1.00
10546818--10546858	22	1.9	21	85	5	55	48	2	0	48	1.14
10547606--10547640	16	2.1	17	89	5	54	31	8	2	57	1.44
10547603--10547643	17	2.4	18	84	12	59	34	7	2	56	1.40
10548780--10548855	39	1.9	39	97	0	143	15	13	23	47	1.81
10559097--10559128	11	3.1	11	86	13	50	59	0	0	40	0.97
10559688--10559743	29	1.9	29	82	7	69	41	10	10	37	1.75
10560671--10560732	20	3.0	20	80	2	70	54	0	4	40	1.22
10560816--10560875	28	2.2	27	80	11	68	53	1	1	43	1.20
10561023--10561075	24	2.1	27	86	10	76	52	1	0	45	1.11
10567135--10567261	61	2.1	61	95	0	227	34	37	6	22	1.79
10568566--10568654	32	2.8	33	81	8	112	47	0	2	50	1.13
10568566--10568672	32	3.3	32	79	11	103	48	0	2	47	1.22
10573604--10573636	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10579736--10579811	24	3.0	24	77	17	75	46	1	0	52	1.08
10579720--10579793	28	2.8	27	82	11	91	47	0	0	52	1.00
10581146--10581179	3	11.3	3	100	0	68	32	0	0	67	0.91
10583177--10583316	58	2.4	60	87	3	203	20	10	30	38	1.87
10583337--10583464	60	2.1	60	94	0	220	25	10	25	38	1.88
10583196--10583459	143	1.9	141	90	1	420	21	10	28	38	1.87
10584952--10584984	2	17.0	2	93	6	59	51	0	0	48	1.00
10586952--10587004	26	2.2	24	86	10	72	33	7	3	54	1.46
10587150--10587192	23	2.0	22	86	13	63	34	0	4	60	1.17
10587161--10587211	22	2.2	24	82	6	61	29	1	7	60	1.36
10587159--10587211	23	2.2	24	83	9	65	30	1	7	60	1.35
10587823--10587852	9	3.3	9	90	0	51	23	0	0	76	0.78
10587821--10587862	18	2.3	18	87	0	57	28	2	0	69	1.01
10593952--10594021	30	2.4	30	83	11	83	38	2	0	58	1.13
10593997--10594030	17	1.9	18	94	5	61	50	5	0	44	1.26
10595093--10595206	39	2.9	40	77	11	94	50	1	1	45	1.22
10595103--10595151	21	2.3	21	80	13	64	46	0	2	51	1.12
10595116--10595162	21	2.2	21	82	14	53	44	0	0	55	0.99
10595671--10595728	26	2.3	26	84	3	73	48	0	3	48	1.18
10595705--10595782	16	4.6	16	74	15	68	52	0	0	47	1.00
10595705--10595785	15	4.9	15	76	15	63	51	0	0	48	1.00
10595847--10595965	15	7.5	15	76	12	112	45	1	0	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10595850--10595965	18	7.1	18	73	21	112	45	1	0	51	1.17
10595847--10595965	33	3.7	33	81	12	138	45	1	0	52	1.16
10595835--10595978	18	8.2	18	70	21	69	45	1	1	52	1.18
10598380--10598414	18	1.9	18	88	11	54	42	2	0	54	1.15
10617671--10617888	57	3.7	58	89	4	332	34	13	7	43	1.73
10617970--10618027	8	7.4	8	81	7	57	84	1	3	10	0.81
10618094--10618126	5	6.6	5	92	0	57	0	36	42	21	1.53
10618347--10618392	20	2.3	20	92	3	76	23	21	28	26	1.99
10618438--10618503	31	2.1	31	83	10	82	27	22	22	27	1.99
10618878--10618931	22	2.4	24	73	17	62	68	5	3	22	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113