genome.fa.s68.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  88  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18283921--18283958	20	1.9	20	94	0	67	34	13	5	47	1.65
18284183--18284266	28	2.9	29	70	16	75	57	10	0	32	1.33
18284373--18284429	23	2.6	23	83	10	66	63	0	1	35	1.05
18293382--18293432	23	2.3	23	90	10	79	64	9	0	25	1.24
18293602--18293727	60	2.1	60	86	4	175	38	15	17	28	1.91
18294018--18294064	24	2.0	24	86	0	67	42	12	21	23	1.87
18297285--18297317	17	1.9	17	100	0	66	54	12	3	30	1.52
18297279--18297331	20	2.8	19	83	11	74	52	15	1	30	1.53
18311625--18311650	11	2.4	11	100	0	52	84	0	15	0	0.62
18311609--18311650	17	2.5	17	88	3	59	78	0	21	0	0.75
18311880--18312019	47	2.9	47	88	4	192	50	17	10	22	1.76
18311884--18312314	148	2.9	149	79	7	346	43	17	10	28	1.82
18311994--18312476	50	9.7	49	78	10	373	40	19	10	29	1.85
18311933--18312467	197	2.7	198	80	7	561	41	18	10	28	1.84
18318129--18318174	17	2.7	17	89	0	74	43	0	8	47	1.34
18319733--18319764	3	10.7	3	100	0	64	0	31	0	68	0.90
18324759--18324788	7	4.4	7	91	8	53	13	0	0	86	0.57
18324759--18324787	13	2.2	13	100	0	58	13	0	0	86	0.58
18331036--18331083	20	2.3	21	82	10	55	12	22	2	62	1.40
18331309--18331346	1	38.0	1	89	0	58	94	0	5	0	0.30
18331309--18331347	11	3.5	11	92	0	69	92	0	7	0	0.39
18331291--18331345	21	2.6	21	85	0	65	85	0	14	0	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18331340--18331471	44	2.9	45	87	5	178	47	18	10	23	1.79
18331388--18331921	96	5.4	94	76	14	433	40	20	10	28	1.86
18331388--18331926	147	3.7	146	81	6	558	40	20	10	28	1.86
18331407--18331926	50	10.6	49	77	13	352	40	20	10	29	1.85
18331387--18331917	196	2.7	197	81	8	568	40	19	10	28	1.86
18337723--18337761	20	1.9	21	84	5	53	10	10	7	71	1.30
18339834--18339878	23	2.0	23	95	0	81	26	17	15	40	1.90
18340005--18340066	24	2.6	24	79	2	72	79	0	17	3	0.87
18340048--18340095	6	7.7	6	83	6	51	79	0	2	18	0.84
18340190--18340234	8	5.9	8	82	10	58	77	2	2	17	0.97
18340569--18340611	11	3.8	12	84	9	54	46	0	0	53	1.00
18345269--18345296	12	2.3	12	100	0	56	42	7	42	7	1.59
18351172--18351298	46	2.8	46	77	0	155	31	14	17	37	1.89
18351647--18351719	5	14.6	5	76	11	53	23	5	0	71	1.07
18353842--18353878	3	12.0	3	94	5	65	64	2	0	32	1.07
18354029--18354098	29	2.5	28	77	13	72	32	1	2	62	1.18
18357257--18357320	26	2.4	27	84	5	76	42	0	3	54	1.16
18357299--18357397	41	2.3	43	81	10	116	50	0	3	46	1.16
18358797--18358841	22	2.0	23	82	8	56	44	8	8	37	1.67
18362781--18362837	21	2.5	23	83	8	73	26	0	3	70	1.03
18362887--18362921	17	2.1	17	89	10	54	68	0	0	31	0.90
18363383--18363427	24	1.9	23	86	13	65	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18363395--18363427	12	2.7	13	86	13	52	78	0	0	21	0.75
18365333--18365852	57	9.1	57	79	8	457	35	10	5	48	1.61
18365324--18365852	233	2.3	230	80	6	572	35	10	5	48	1.62
18365952--18366000	17	2.7	17	81	18	55	77	2	2	18	0.96
18365959--18365999	17	2.4	17	88	12	57	78	0	2	19	0.87
18365951--18366001	19	2.6	19	81	15	59	78	1	1	17	0.94
18366445--18366491	11	4.4	11	75	5	51	61	14	2	21	1.43
18367179--18367216	15	2.6	14	88	12	51	57	0	0	42	0.98
18371246--18371270	8	3.1	8	100	0	50	28	0	0	72	0.86
18374903--18374939	2	18.5	2	94	0	65	45	0	54	0	1.00
18376452--18376490	19	2.1	19	100	0	78	41	20	12	25	1.88
18377119--18377157	18	2.2	18	95	4	71	66	5	0	28	1.12
18397476--18397551	39	1.9	39	97	0	143	40	6	9	43	1.63
18399793--18399975	92	2.0	92	87	0	267	41	4	16	37	1.69
18401475--18401512	16	2.3	17	90	4	60	44	13	5	36	1.66
18404342--18404396	17	3.3	16	72	23	51	63	3	7	25	1.37
18404597--18404692	39	2.5	37	80	8	111	46	16	12	23	1.81
18405050--18405237	103	1.8	102	85	3	261	28	13	12	45	1.80
18406390--18406491	50	2.0	51	98	1	197	40	9	23	26	1.86
18410032--18410140	44	2.4	43	73	13	112	57	9	10	22	1.59
18415028--18415075	24	2.1	24	85	14	66	72	2	16	8	1.18
18423614--18423650	16	2.2	17	90	4	58	45	13	5	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18424931--18424994	33	1.9	33	96	0	119	29	20	12	37	1.89
18426548--18426588	21	2.0	21	85	9	57	53	4	7	34	1.50
18427399--18427436	3	12.7	3	100	0	76	31	0	0	68	0.90
18429329--18429411	37	2.4	35	80	8	89	44	1	0	54	1.08
18429349--18429419	29	2.4	30	72	6	74	39	2	0	57	1.13
18429593--18429699	30	3.6	30	74	3	83	56	2	6	34	1.40
18437807--18438107	10	30.6	10	66	12	72	54	7	3	34	1.45
18437797--18437854	30	1.9	30	85	0	80	58	5	1	34	1.30
18438010--18438107	9	9.9	10	75	15	71	56	5	3	35	1.37
18438023--18438085	19	3.3	19	78	12	65	55	7	3	33	1.45
18438062--18438107	11	4.3	11	86	10	60	60	2	2	34	1.21
18438090--18438145	26	2.1	27	83	6	69	58	3	10	26	1.48
18438268--18438330	19	3.3	19	80	6	65	52	1	1	44	1.20
18438640--18438724	29	3.0	27	75	10	80	31	1	8	58	1.35
18438964--18439008	23	1.9	22	82	13	54	35	11	2	51	1.50
18439092--18439154	29	2.2	29	88	2	92	52	3	0	44	1.17
18444237--18444262	8	3.2	8	100	0	52	76	0	0	23	0.78
18444355--18444459	52	2.0	52	88	3	158	42	9	22	24	1.83
18446004--18446049	6	7.7	6	90	0	74	17	19	28	34	1.94
18446004--18446059	18	3.1	18	84	5	69	19	17	28	33	1.95
18447329--18447367	2	19.5	2	100	0	78	48	0	0	51	1.00
18447855--18447901	22	2.1	22	88	4	67	36	6	17	40	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18447939--18448071	61	2.2	61	79	4	153	40	2	14	42	1.58
18448151--18448476	127	2.5	126	81	5	350	42	3	9	44	1.54
18448975--18449191	108	2.0	105	85	6	285	45	2	12	39	1.55
18452662--18452704	22	2.0	22	100	0	86	39	23	4	32	1.75
18457108--18457192	31	2.7	31	90	0	143	25	23	18	31	1.97
18457132--18457184	17	3.3	17	69	15	58	30	28	13	28	1.94
18457996--18458071	33	2.3	32	80	4	89	30	6	9	53	1.58
18458008--18458090	33	2.6	33	78	3	89	30	7	8	54	1.58
18458032--18458194	65	2.5	64	72	13	145	28	12	6	52	1.65
18458357--18458418	22	2.8	22	78	14	65	38	9	6	45	1.63
18458960--18459009	21	2.3	22	86	3	66	72	2	8	18	1.19
18460796--18460834	17	2.3	17	86	0	51	23	2	30	43	1.67
18467745--18467817	33	2.1	37	87	10	109	58	9	2	28	1.43
18476053--18476097	17	2.6	17	89	0	63	57	11	20	11	1.63
18476349--18476376	2	14.0	2	100	0	56	50	0	0	50	1.00
18478042--18478069	2	14.0	2	100	0	56	50	0	0	50	1.00
18478625--18478686	2	32.0	2	83	6	74	50	4	1	43	1.33
18491988--18492040	19	2.7	20	77	16	65	24	7	20	47	1.76
18492257--18492289	3	11.0	3	100	0	66	33	0	0	66	0.92
18492489--18492520	3	10.7	3	100	0	64	65	0	0	34	0.93
18492586--18492641	22	2.5	22	97	0	103	17	19	1	60	1.45
18496322--18496377	18	3.1	18	78	0	58	30	25	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18505528--18505576	21	2.3	21	100	0	98	22	28	4	44	1.71
18511792--18511835	22	2.0	22	90	0	70	34	11	11	43	1.77
18516028--18516068	21	2.0	21	90	0	64	36	12	4	46	1.63
18516215--18516262	26	1.9	26	83	8	64	22	12	2	62	1.40
18516263--18517372	584	1.9	586	89	1	1746	34	21	11	31	1.90
18521379--18521405	1	27.0	1	100	0	54	0	0	0	100	0.00
18528155--18528254	51	2.0	51	90	4	157	27	10	8	55	1.61
18529904--18530159	43	6.1	41	75	12	166	45	16	13	24	1.83
18529897--18530163	44	6.3	43	76	9	226	46	16	12	24	1.82
18530144--18530180	18	2.1	18	100	0	74	62	5	5	27	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113