genome.fa.s68.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  75  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16611272--16611597	181	1.8	177	80	9	392	45	10	5	38	1.62
16611995--16612024	11	2.7	11	94	0	51	43	6	3	46	1.46
16612073--16612165	18	5.1	18	66	20	59	39	4	0	55	1.19
16612978--16613110	63	2.1	63	92	0	221	39	12	6	42	1.67
16613201--16613269	25	2.7	26	80	14	65	53	0	2	43	1.15
16613209--16613261	19	2.9	18	81	13	63	56	0	3	39	1.17
16613539--16613610	12	5.9	12	69	19	51	47	0	4	48	1.21
16613520--16613598	36	2.2	36	97	2	151	48	0	5	46	1.24
16614595--16614700	49	2.2	47	85	13	144	54	0	0	44	1.06
16614914--16615375	176	2.6	176	79	5	457	41	9	8	40	1.68
16614914--16615436	176	2.9	177	78	7	418	41	10	8	39	1.69
16615555--16615613	26	2.3	24	80	13	64	44	3	3	49	1.36
16615607--16615695	7	11.1	8	73	20	55	41	1	1	56	1.14
16615704--16615744	21	1.9	22	90	5	66	51	0	2	46	1.14
16616273--16616318	14	3.0	15	87	9	58	45	0	0	54	0.99
16616799--16617110	160	1.9	160	79	4	342	45	9	7	37	1.64
16617527--16617568	14	3.1	14	86	3	50	42	0	2	54	1.13
16617745--16617769	13	1.9	13	100	0	50	52	0	8	40	1.31
16617900--16618066	23	7.8	23	67	16	92	47	0	2	48	1.21
16618524--16618703	92	2.0	92	82	2	218	43	11	11	33	1.77
16618611--16619233	179	3.5	180	80	4	625	41	9	9	39	1.70
16620374--16620425	27	1.9	27	84	0	68	48	3	1	46	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16620777--16620825	22	2.2	22	78	7	55	42	0	6	51	1.27
16620896--16620946	22	2.3	22	86	0	66	35	1	1	60	1.19
16620896--16620945	19	2.6	20	81	9	59	36	2	2	60	1.20
16621727--16621802	17	4.3	18	75	21	72	52	5	1	40	1.32
16621752--16621791	18	2.2	19	86	13	57	55	0	2	42	1.13
16621930--16622067	12	11.3	13	66	24	61	54	0	0	44	1.05
16622269--16622297	9	3.3	9	90	9	51	44	0	0	55	0.99
16622808--16622852	21	2.0	22	87	8	65	44	4	0	51	1.21
16622989--16623329	181	1.9	181	82	2	425	40	9	10	39	1.71
16623842--16623896	14	3.9	14	73	17	51	54	0	3	41	1.18
16624704--16624728	13	1.9	13	100	0	50	64	0	4	32	1.12
16624805--16624854	13	3.8	13	76	15	50	56	0	2	42	1.11
16624954--16624990	12	3.2	12	88	11	51	37	0	0	62	0.96
16624951--16624995	20	2.5	17	82	10	54	37	0	0	62	0.96
16625249--16625308	29	2.1	29	81	6	68	46	5	5	43	1.47
16625943--16625985	17	2.4	19	80	11	54	46	0	2	51	1.13
16627482--16627517	15	2.5	14	86	4	54	52	2	0	44	1.15
16627534--16627577	19	2.2	20	88	4	63	52	4	2	40	1.34
16627634--16627675	22	1.9	22	85	0	57	54	0	2	42	1.13
16627592--16627676	37	2.4	36	73	13	86	51	1	4	42	1.30
16627736--16627778	19	2.3	19	84	8	52	53	0	0	46	1.00
16627764--16627833	27	2.5	26	76	21	63	47	2	2	47	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16627790--16627831	17	2.4	18	80	7	52	52	2	2	42	1.27
16627809--16627898	10	8.8	10	72	20	62	53	2	4	40	1.33
16627810--16627896	41	2.1	41	83	12	108	52	2	4	40	1.34
16627975--16628032	24	2.4	23	75	16	55	48	6	3	41	1.47
16628163--16629099	181	5.2	179	78	7	806	39	8	9	42	1.68
16628192--16629113	362	2.5	360	80	5	957	39	8	9	42	1.68
16634819--16634874	26	2.2	26	84	15	73	76	8	1	12	1.08
16635929--16635969	21	1.9	22	85	5	57	68	4	2	24	1.22
16637583--16637650	21	3.2	22	76	15	72	79	16	0	4	0.89
16637615--16637647	13	2.3	15	85	15	52	78	18	0	3	0.87
16639511--16639575	28	2.3	28	80	15	80	32	3	4	60	1.33
16639808--16639881	14	5.2	14	75	18	64	44	0	1	54	1.08
16639737--16639879	55	2.6	57	72	18	126	44	0	2	53	1.17
16640032--16641207	180	6.5	178	72	11	612	43	10	8	38	1.68
16639984--16641207	539	2.3	539	80	4	1342	42	9	8	39	1.68
16639982--16641304	180	7.4	177	72	11	526	42	10	8	39	1.69
16640968--16641304	181	1.9	180	83	6	439	41	11	7	39	1.70
16641336--16641366	11	2.8	11	95	0	53	58	0	0	41	0.98
16641319--16641373	29	1.9	28	85	10	76	56	0	0	43	0.99
16641330--16641386	11	4.9	12	81	16	50	59	0	1	38	1.08
16641343--16641392	18	2.7	19	81	9	59	60	0	2	38	1.09
16641306--16641450	76	1.9	76	79	10	163	52	0	2	44	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16642514--16642543	15	2.1	15	93	6	53	66	6	0	26	1.16
16642623--16642665	16	2.9	15	86	13	63	48	0	0	51	1.00
16642714--16642767	12	4.6	12	73	13	58	46	1	0	51	1.11
16643733--16643771	15	2.4	17	87	8	55	64	0	2	33	1.08
16643911--16643964	17	3.2	17	75	17	58	40	0	3	55	1.17
16645137--16645179	22	2.0	22	86	9	61	53	6	0	39	1.28
16646853--16646894	13	3.2	13	86	13	59	40	0	7	52	1.29
16646845--16646912	25	2.7	27	80	8	72	44	0	4	51	1.21
16646880--16646914	18	1.9	18	88	0	52	42	0	2	54	1.15
16647292--16647339	13	3.5	13	80	5	51	52	0	0	47	1.00
16647443--16647534	41	2.2	42	80	16	104	48	1	2	47	1.20
16647473--16647583	20	5.6	19	74	15	82	52	1	1	44	1.22
16647463--16647581	40	3.0	39	77	12	116	52	1	2	43	1.24
16647542--16647610	32	2.2	32	84	10	88	52	1	2	43	1.25
16647654--16647696	20	2.2	18	84	12	50	46	2	0	51	1.13
16647661--16647696	20	1.9	20	88	11	58	47	2	0	50	1.15
16652408--16652461	21	2.6	21	93	0	90	16	11	11	61	1.57
16652498--16654518	181	11.2	178	74	8	1211	42	9	7	39	1.68
16652484--16654050	543	2.9	538	78	5	1426	42	9	8	39	1.67
16652498--16654033	724	2.1	723	81	3	1768	43	9	8	39	1.67
16654702--16654737	16	2.1	17	90	10	56	41	5	8	44	1.58
16654542--16654826	156	1.8	156	84	4	387	36	10	7	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16654486--16654838	156	2.2	156	79	5	381	39	10	6	43	1.64
16654684--16657311	180	14.6	179	74	8	1703	40	9	8	40	1.68
16654691--16657150	362	6.8	359	73	11	875	41	9	8	40	1.68
16654718--16657310	538	4.8	532	73	11	1355	40	9	8	40	1.68
16657327--16657809	181	2.7	181	76	8	462	41	10	7	40	1.68
16657842--16658456	176	3.4	176	76	11	497	43	9	6	40	1.65
16657900--16658453	181	3.1	179	73	12	483	43	10	6	39	1.65
16658667--16658712	25	1.9	23	86	8	65	34	10	10	43	1.75
16658681--16659266	181	3.2	178	77	6	579	38	10	10	41	1.72
16659168--16659393	120	1.9	119	84	4	303	33	12	8	46	1.72
16658997--16659546	301	1.8	301	83	3	721	38	10	8	42	1.71
16659284--16660864	181	8.8	181	79	6	1559	41	9	8	40	1.68
16659837--16659869	18	1.9	17	88	11	50	39	6	6	48	1.53
16659271--16660864	360	4.4	362	80	6	1646	41	9	8	40	1.67
16660978--16661378	182	2.2	179	81	5	468	44	9	7	38	1.65
16661435--16661566	67	2.0	67	87	3	194	34	9	9	45	1.71
16662349--16662381	18	1.9	17	88	11	50	39	6	6	48	1.53
16661743--16662982	181	6.9	178	74	7	873	40	10	8	40	1.71
16663565--16663721	52	3.0	52	86	1	190	26	26	8	38	1.85
16663746--16663788	22	2.0	22	95	0	77	46	34	0	18	1.50
16663854--16665268	181	7.8	179	76	7	1065	42	9	8	39	1.69
16665293--16677868	181	69.7	181	69	12	3455	41	10	7	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16665310--16666506	357	3.3	354	77	7	1136	40	11	8	39	1.71
16665293--16666506	538	2.3	536	79	4	1334	41	11	8	39	1.71
16667196--16670335	355	8.7	362	73	9	908	42	10	7	39	1.69
16667060--16677868	181	60.0	182	71	11	4680	42	10	7	39	1.68
16667193--16670784	182	20.1	174	72	11	730	42	10	8	39	1.68
16673381--16673697	169	1.9	168	83	7	419	41	11	6	39	1.69
16675374--16675422	20	2.6	18	72	12	53	53	6	4	36	1.45
16677950--16678458	180	2.8	179	77	7	519	42	9	8	40	1.68
16678940--16679031	6	15.8	6	84	8	102	18	0	2	79	0.84
16679855--16680232	186	2.0	186	84	9	488	45	7	11	34	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113