genome.fa.s68.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  66  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15515090--15515235	43	3.4	43	91	0	229	39	14	8	36	1.77
15515690--15515802	60	1.9	60	88	0	172	30	26	9	33	1.89
15516464--15516561	7	14.0	7	77	16	71	4	14	0	81	0.83
15516468--15516553	5	16.8	5	74	18	56	3	15	0	81	0.82
15516461--15516549	30	3.1	29	78	18	87	3	16	0	79	0.86
15516466--15516562	16	5.8	16	77	10	86	4	14	0	81	0.83
15516447--15516562	35	3.4	33	76	15	101	4	16	0	79	0.89
15522063--15522130	18	3.8	19	81	13	65	17	4	1	76	1.03
15522090--15522134	8	5.6	8	86	7	65	20	0	0	80	0.72
15522071--15522117	16	2.9	16	87	3	58	17	2	2	78	0.94
15522073--15522133	24	2.5	25	82	12	74	18	1	1	78	0.91
15522071--15522135	17	3.9	16	82	9	76	16	1	1	80	0.88
15522482--15522715	121	1.9	120	89	4	364	28	25	15	30	1.96
15523015--15523041	2	13.5	2	100	0	54	51	0	0	48	1.00
15523340--15523391	18	2.9	18	70	13	54	48	0	3	48	1.20
15523366--15523482	30	3.9	30	74	9	114	52	0	8	38	1.32
15523483--15523536	28	1.9	29	85	7	76	35	1	1	61	1.18
15525832--15525864	16	2.0	17	94	5	59	24	6	15	54	1.63
15528439--15528481	20	2.2	20	87	4	61	30	9	9	51	1.65
15529597--15529634	14	2.7	15	88	8	53	42	2	0	55	1.14
15529597--15529639	15	3.1	14	83	9	52	39	2	0	58	1.11
15535213--15535425	113	1.9	111	80	4	248	40	12	16	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15537466--15537520	22	2.5	22	90	0	83	32	30	14	21	1.93
15543083--15543118	5	7.2	5	100	0	72	61	0	0	38	0.96
15554827--15554856	7	4.3	7	100	0	60	83	0	0	16	0.65
15558328--15558440	53	2.2	53	88	4	167	53	6	7	31	1.55
15558445--15558603	56	2.8	57	78	11	166	46	6	10	35	1.66
15562600--15562667	15	4.3	15	75	10	57	75	0	13	11	1.06
15562599--15562668	24	2.9	24	74	4	70	74	0	14	11	1.08
15562608--15562667	15	3.9	15	77	12	59	73	0	13	13	1.10
15562591--15562667	8	9.6	8	77	16	61	76	0	12	10	1.02
15563446--15563483	12	3.1	13	77	14	53	18	21	18	42	1.90
15564065--15564116	17	3.0	17	77	2	50	32	1	13	51	1.52
15564116--15564245	17	7.6	17	69	10	68	41	15	7	35	1.76
15564181--15564245	34	1.9	33	84	3	85	38	13	7	40	1.74
15564200--15564255	17	3.4	16	78	7	51	26	17	12	42	1.85
15565096--15565124	14	2.0	15	93	6	51	82	13	0	3	0.79
15566191--15566311	52	2.3	52	81	6	149	53	5	8	32	1.54
15566263--15566525	57	4.5	57	83	6	309	47	6	9	36	1.63
15566263--15566525	115	2.3	114	84	7	327	47	6	9	36	1.63
15566987--15567056	35	2.0	35	97	0	131	28	10	17	44	1.81
15567763--15567886	64	1.9	64	80	3	142	33	7	23	35	1.82
15571389--15571522	64	2.1	64	87	2	189	37	5	22	34	1.79
15577998--15578033	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15579430--15579463	14	2.4	14	90	5	50	88	0	8	2	0.62
15584051--15584161	53	2.0	53	84	5	141	46	9	10	32	1.72
15588326--15588432	52	2.2	47	82	12	128	35	16	1	45	1.59
15588346--15588449	52	2.0	51	98	1	199	35	18	1	44	1.61
15588429--15588523	34	2.9	32	78	10	95	44	5	9	41	1.59
15590863--15590901	13	3.1	13	85	3	53	71	2	0	25	0.98
15591165--15591217	18	2.8	19	80	5	54	41	26	13	18	1.87
15594437--15594483	24	2.0	24	87	4	69	48	10	10	29	1.71
15599793--15599826	3	11.3	3	87	0	50	0	26	0	73	0.83
15609638--15609689	21	2.5	21	75	6	52	50	0	3	46	1.20
15610306--15610339	14	2.4	14	90	9	52	73	0	11	14	1.10
15615880--15615949	31	2.3	31	84	0	86	27	18	21	32	1.97
15616247--15616389	71	2.0	71	97	0	268	32	32	6	27	1.82
15616516--15616659	52	2.8	52	87	2	191	27	17	7	47	1.75
15616685--15616726	11	3.8	11	80	0	57	50	23	0	26	1.50
15621933--15621964	2	16.0	2	100	0	64	50	0	0	50	1.00
15631353--15631397	22	2.1	21	83	4	54	77	6	11	4	1.09
15632765--15632923	56	2.8	57	77	8	180	47	6	8	37	1.60
15632779--15632920	55	2.5	56	80	7	153	47	7	8	37	1.61
15633515--15633554	4	10.0	4	88	0	62	25	0	0	75	0.81
15633967--15633992	12	2.2	12	100	0	52	42	0	23	34	1.54
15636910--15636979	8	8.6	8	73	17	56	74	1	12	11	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15636909--15636980	25	2.9	25	77	6	76	73	1	13	11	1.16
15636935--15636979	15	2.8	16	80	6	56	73	0	13	13	1.10
15637180--15637595	60	6.9	59	85	6	568	32	13	7	46	1.70
15637180--15637594	121	3.5	119	93	3	674	33	13	7	46	1.70
15637614--15637732	10	11.6	10	68	20	59	73	2	5	19	1.14
15637603--15637648	24	1.9	24	86	8	67	76	0	8	15	1.02
15637628--15637732	46	2.3	46	80	9	115	73	2	3	20	1.12
15637628--15637695	19	3.3	21	78	13	54	77	1	5	14	1.02
15638709--15638739	8	3.8	8	91	8	53	87	0	12	0	0.55
15638775--15638848	20	3.8	20	66	21	59	18	28	29	22	1.98
15638760--15638851	36	2.6	36	91	1	141	17	28	29	25	1.97
15639787--15639880	22	4.2	22	68	6	73	35	6	15	42	1.73
15640017--15640067	17	3.0	17	79	0	57	31	3	13	50	1.60
15640111--15640149	17	2.4	16	87	12	53	51	7	5	35	1.53
15642162--15642264	53	1.9	54	86	5	147	49	6	7	35	1.58
15642222--15642487	57	4.5	58	82	5	295	46	6	10	36	1.65
15642222--15642487	115	2.3	115	82	5	302	46	6	10	36	1.65
15643703--15643822	64	1.9	64	80	3	143	36	6	22	34	1.80
15648438--15648556	63	1.9	63	89	3	186	35	5	26	33	1.78
15654905--15654934	2	15.0	2	100	0	60	50	0	0	50	1.00
15656637--15656680	21	2.0	22	86	8	63	75	2	2	20	1.03
15658441--15658480	13	3.2	12	85	3	53	70	2	0	27	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15658458--15658503	16	2.9	16	75	15	51	67	0	2	30	1.03
15658526--15658571	24	1.9	24	86	8	67	71	0	2	26	0.97
15659218--15659251	2	17.0	2	87	0	50	47	2	0	50	1.16
15671504--15671583	37	2.1	38	93	2	135	13	26	7	52	1.67
15672356--15672541	92	2.0	92	95	0	336	32	20	13	33	1.92
15677951--15678008	19	3.1	18	76	14	55	8	6	6	77	1.12
15679952--15679980	12	2.3	13	94	5	51	0	24	0	75	0.80
15686926--15686999	29	2.5	31	80	4	89	45	4	0	50	1.20
15687237--15687271	17	2.1	18	89	10	56	62	0	2	34	1.10
15688974--15689010	14	2.6	14	91	4	56	24	2	8	64	1.34
15689031--15689071	21	1.9	22	85	5	57	46	0	4	48	1.23
15689137--15689178	5	8.8	5	89	10	70	80	0	0	19	0.70
15689137--15689171	18	1.9	18	100	0	70	80	0	0	20	0.72
15689137--15689180	23	2.0	22	95	4	79	81	0	0	18	0.68
15689310--15689377	31	2.2	31	100	0	136	25	32	7	35	1.83
15690420--15690556	56	2.4	56	80	2	159	41	14	21	21	1.89
15690493--15690942	115	3.9	114	76	5	368	43	13	22	20	1.86
15696236--15696349	59	1.9	59	82	7	142	30	1	11	56	1.45
15696316--15696347	15	2.1	15	100	0	64	31	0	12	56	1.37
15696432--15696527	44	2.2	44	83	7	115	70	4	3	21	1.18
15696491--15696542	5	10.8	5	84	13	65	82	1	0	15	0.75
15699076--15699127	18	2.9	18	72	13	54	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15699086--15699112	14	1.9	14	100	0	54	37	0	0	62	0.95
15699167--15699197	3	10.3	3	100	0	62	67	0	0	32	0.91
15699196--15699239	3	14.7	3	100	0	88	34	0	0	65	0.93
15702880--15702910	15	2.0	16	93	6	55	70	0	0	29	0.87
15707158--15707212	3	18.3	3	100	0	110	32	0	0	67	0.91
15707968--15707997	13	2.3	13	100	0	60	6	6	6	80	1.04
15708017--15708045	5	5.8	5	100	0	58	20	0	0	79	0.74
15714276--15714360	5	17.0	5	72	16	61	21	2	3	72	1.10
15714275--15714371	32	3.2	29	79	13	99	21	3	3	72	1.13
15716051--15716075	12	2.1	12	100	0	50	16	0	0	84	0.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113