genome.fa.s68.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  24  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8282946--8282972	2	13.5	2	100	0	54	51	0	0	48	1.00
8283176--8283202	2	13.5	2	100	0	54	51	0	0	48	1.00
8292136--8292170	19	1.9	17	88	11	52	62	5	2	28	1.32
8298436--8298470	12	2.8	12	91	4	52	40	0	5	54	1.24
8298964--8298999	4	8.8	4	87	6	54	25	0	2	72	0.98
8299073--8299120	25	1.9	25	87	8	71	50	0	6	43	1.27
8299761--8300109	175	2.0	175	93	1	601	42	9	13	34	1.76
8303466--8303519	2	27.0	2	88	0	72	50	7	0	42	1.30
8303963--8304028	29	2.3	29	89	0	96	15	22	10	51	1.73
8304643--8304670	3	9.3	3	100	0	56	35	32	32	0	1.58
8312367--8312404	13	3.1	13	88	7	53	78	0	7	13	0.94
8314129--8314232	42	2.5	42	80	3	111	46	4	4	44	1.46
8314555--8314595	19	2.0	21	90	9	68	34	0	4	60	1.18
8314635--8314683	26	2.0	26	88	8	75	55	0	0	44	0.99
8321233--8321276	22	2.0	22	95	0	79	45	15	9	29	1.77
8325423--8325466	22	2.0	22	95	0	79	43	13	11	31	1.80
8332859--8332896	2	19.0	2	100	0	76	50	0	0	50	1.00
8335824--8335850	2	13.5	2	100	0	54	51	0	0	48	1.00
8339126--8339197	36	2.0	36	97	0	135	40	8	20	30	1.82
8341671--8341709	19	2.1	19	85	9	53	41	5	23	30	1.76
8343604--8343641	2	19.5	2	94	5	69	50	0	0	50	1.00
8344707--8344735	2	14.5	2	100	0	58	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8347315--8347349	17	2.0	18	88	5	54	62	0	0	37	0.95
8347602--8347642	18	2.2	19	91	4	66	29	0	2	68	1.03
8347680--8347719	13	3.1	13	81	0	53	55	2	0	42	1.13
8352825--8352858	17	2.0	17	88	0	50	26	2	29	41	1.70
8352891--8352982	28	3.2	28	75	10	78	19	0	28	52	1.47
8352866--8352982	14	7.9	15	65	13	55	21	0	28	50	1.49
8353284--8353340	21	2.7	21	81	7	62	29	0	3	66	1.08
8355451--8356085	333	1.9	331	84	2	853	31	15	14	39	1.87
8358787--8358827	10	4.1	10	100	0	82	41	9	19	29	1.83
8364539--8364563	13	1.9	13	100	0	50	24	12	8	56	1.62
8368431--8368496	34	1.9	34	90	0	105	31	16	18	33	1.93
8373969--8374011	18	2.4	18	88	0	59	37	16	16	30	1.91
8375803--8375870	18	3.8	18	75	7	66	39	5	14	39	1.71
8377633--8377702	4	18.5	4	75	19	62	48	1	0	50	1.09
8377644--8377712	24	2.9	22	74	17	75	47	1	0	50	1.09
8378805--8378912	34	3.2	33	78	10	112	41	6	8	43	1.60
8380147--8380179	15	2.1	17	88	11	52	15	6	18	60	1.54
8390377--8390401	3	8.3	3	100	0	50	32	0	0	68	0.90
8406599--8406631	17	1.9	18	88	11	52	30	0	0	69	0.88
8408387--8408428	2	21.5	2	95	4	77	0	47	0	52	1.00
8412894--8412936	19	2.3	19	87	0	59	51	0	0	48	1.00
8414699--8414847	22	6.7	22	70	6	68	42	6	6	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8415019--8415076	15	3.9	15	76	13	57	37	1	5	55	1.33
8414978--8415142	22	7.5	22	79	3	136	35	4	9	50	1.55
8415019--8415076	7	7.9	7	75	9	53	37	1	5	55	1.33
8415005--8415149	66	2.2	66	86	2	184	35	3	11	49	1.55
8415015--8415163	44	3.4	43	79	4	120	38	4	8	48	1.53
8415046--8415187	66	2.2	65	79	6	151	40	5	9	44	1.61
8415612--8415774	22	7.5	22	75	10	102	38	5	7	48	1.54
8415612--8415769	44	3.6	43	78	7	133	37	5	7	49	1.53
8415692--8415769	11	7.1	11	67	11	52	39	3	5	51	1.42
8415795--8415918	66	1.9	66	85	6	171	37	10	4	46	1.60
8415773--8415914	22	6.5	22	78	3	115	39	10	4	45	1.58
8415767--8415914	44	3.3	44	79	2	136	39	10	4	45	1.58
8415775--8416471	22	31.7	22	69	10	104	35	10	6	47	1.63
8416760--8417094	22	15.7	22	70	13	148	33	8	6	51	1.59
8419478--8419754	152	1.8	151	83	4	369	47	5	7	39	1.54
8419509--8419823	152	2.1	153	80	9	349	45	5	6	42	1.53
8419787--8419816	13	2.3	13	94	0	51	50	0	3	46	1.18
8419509--8419789	152	1.8	151	81	6	352	45	5	6	41	1.54
8421517--8421579	28	2.2	28	83	10	76	55	1	4	38	1.31
8421714--8421846	64	2.1	64	87	2	187	45	3	9	41	1.53
8426479--8426530	24	2.1	26	89	7	81	38	0	0	61	0.96
8427255--8427318	24	2.7	23	76	13	58	79	7	3	9	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8427261--8427299	17	2.3	17	90	0	60	84	0	2	12	0.72
8427231--8427299	22	3.1	22	77	12	61	81	5	1	11	0.93
8427234--8427293	9	6.3	9	74	16	50	81	6	1	10	0.93
8429053--8429086	17	2.0	17	94	0	59	20	5	14	58	1.57
8460972--8461000	3	9.7	3	100	0	58	0	34	34	31	1.58
8477851--8477881	16	1.9	16	93	0	53	48	3	0	48	1.17
8481834--8481870	16	2.3	17	86	9	51	13	10	27	48	1.75
8482687--8482732	18	2.7	17	75	21	51	30	0	0	69	0.89
8482724--8482784	21	2.9	21	76	9	61	47	3	0	49	1.18
8483219--8483261	19	2.5	16	76	20	50	30	0	0	69	0.88
8485346--8485382	19	1.9	19	89	10	58	32	0	0	67	0.91
8485346--8485382	9	3.9	10	86	10	51	32	0	0	67	0.91
8487326--8487364	17	2.4	16	83	8	51	82	0	12	5	0.83
8487327--8487392	6	11.0	6	87	7	57	77	0	21	1	0.85
8487347--8487384	14	2.6	14	87	4	58	76	0	23	0	0.79
8487345--8487390	14	3.4	14	74	17	51	73	0	26	0	0.83
8496819--8496871	24	2.2	24	82	0	61	47	15	0	37	1.45
8497210--8497269	23	2.4	25	81	15	63	36	6	1	55	1.36
8501405--8501431	2	13.5	2	100	0	54	51	0	48	0	1.00
8512006--8512030	2	12.5	2	100	0	50	0	48	0	52	1.00
8516227--8516282	23	2.5	23	78	21	66	57	1	0	41	1.09
8516606--8516653	24	2.0	24	87	4	69	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8516605--8516667	25	2.5	24	79	5	72	49	0	0	50	1.00
8516758--8516797	17	2.5	17	92	8	66	70	0	0	30	0.88
8518488--8518546	27	2.2	27	87	0	82	49	5	15	30	1.66
8528296--8528350	18	2.8	21	76	21	64	52	0	0	47	1.00
8528281--8528332	24	2.2	24	82	0	59	51	1	0	46	1.12
8529347--8529491	78	1.9	78	92	0	245	33	12	13	40	1.83
8530822--8530884	19	3.0	21	73	21	62	20	0	6	73	1.05
8530882--8530921	18	2.2	18	86	0	53	47	2	5	45	1.38
8531384--8531417	15	2.3	15	100	0	68	76	5	0	17	0.98
8531656--8531692	14	2.5	15	82	8	58	62	0	0	37	0.96
8533893--8534188	78	3.8	78	93	0	504	28	24	18	29	1.98
8533894--8534188	155	1.9	156	94	0	520	27	24	18	29	1.98
8535769--8535797	15	1.9	15	100	0	58	6	3	0	89	0.57
8538943--8538982	17	2.5	17	88	8	57	27	0	2	70	1.01
8538943--8538982	16	2.5	16	84	11	55	27	0	2	70	1.01
8542689--8542719	13	2.5	12	94	5	53	90	0	9	0	0.46
8544189--8544223	17	2.0	18	88	5	54	34	5	0	60	1.21
8545451--8545650	69	2.9	69	93	0	328	32	14	14	39	1.86
8549279--8549310	16	2.0	16	93	0	55	9	6	0	84	0.78
8552454--8552493	16	2.5	15	84	11	53	27	2	2	67	1.16
8556654--8556684	13	2.5	12	94	5	53	90	0	9	0	0.46
8558164--8558198	17	2.0	18	88	5	54	34	5	0	60	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8559428--8559627	69	2.9	69	93	0	319	32	15	14	39	1.86
8569907--8569945	2	19.5	2	100	0	78	0	48	0	51	1.00
8570255--8570294	19	2.1	19	100	0	80	40	0	30	30	1.57
8571828--8571964	68	2.0	68	91	2	222	49	11	8	29	1.69
8572620--8572676	30	1.9	30	85	0	78	52	1	0	45	1.11
8574319--8574352	16	2.1	16	100	0	68	29	26	5	38	1.80
8580707--8580740	18	1.9	18	94	5	61	50	2	0	47	1.16
8581468--8581496	6	4.8	6	100	0	58	17	0	48	34	1.47
8593003--8593067	33	2.0	33	93	0	112	29	7	33	29	1.85
8599345--8599457	25	4.7	25	68	11	76	54	0	1	42	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113