genome.fa.s68.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  82  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17242112--17242162	12	4.6	11	78	14	52	0	21	1	76	0.88
17242127--17242167	18	2.2	18	91	8	64	0	14	0	85	0.60
17246339--17246376	20	1.9	20	94	0	67	55	36	0	7	1.29
17249141--17249186	21	2.2	20	85	11	58	21	0	6	71	1.08
17249140--17249199	29	2.1	28	81	9	68	20	0	8	71	1.11
17257736--17257826	47	1.9	47	100	0	182	41	10	4	42	1.60
17261603--17261656	19	2.5	22	77	11	60	46	0	1	51	1.11
17261637--17261683	14	3.3	14	78	21	53	44	0	0	55	0.99
17261637--17261683	21	2.2	22	85	11	62	44	0	0	55	0.99
17264343--17264385	12	3.5	12	87	9	52	62	0	4	32	1.15
17264343--17264385	13	3.4	12	83	6	50	62	0	4	32	1.15
17265042--17265084	10	4.5	10	81	18	56	69	2	0	27	1.00
17266532--17266569	6	6.3	6	88	11	60	50	2	0	47	1.15
17266539--17266574	18	1.9	18	94	5	63	47	2	0	50	1.15
17270658--17270767	58	1.9	58	85	7	152	56	9	10	24	1.61
17277714--17277766	16	3.2	16	81	10	54	67	0	0	32	0.91
17277721--17277766	16	2.9	16	90	3	67	67	0	0	32	0.91
17278255--17278291	18	2.1	18	89	0	56	32	0	0	67	0.91
17278568--17278612	19	2.4	18	81	7	54	57	0	4	37	1.19
17278568--17278607	18	2.2	19	86	4	55	60	0	2	37	1.11
17279123--17279178	23	2.4	23	84	3	67	21	3	1	73	1.08
17279143--17279185	15	3.0	15	86	6	54	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17281001--17281089	29	3.1	27	73	12	74	50	1	1	47	1.15
17281115--17281159	22	2.0	22	84	16	58	57	2	0	40	1.11
17281123--17281164	18	2.3	19	84	8	52	54	2	0	42	1.13
17281134--17281182	15	2.9	19	72	27	56	53	0	0	46	1.00
17282036--17282063	12	2.3	12	100	0	56	92	7	0	0	0.37
17285767--17286135	9	38.6	9	68	16	149	54	4	2	38	1.32
17285910--17285951	11	3.9	11	87	6	59	52	2	4	40	1.35
17285767--17286134	19	19.1	20	66	17	140	54	4	2	38	1.32
17286500--17286546	21	2.2	21	85	7	60	29	2	2	65	1.15
17286500--17286546	22	2.2	20	85	11	58	29	2	2	65	1.15
17286631--17286753	10	12.3	10	67	10	56	38	4	4	52	1.45
17290517--17290564	15	3.2	14	75	13	51	81	4	14	0	0.84
17290909--17290978	10	7.0	10	69	6	52	80	0	14	5	0.89
17290911--17290985	27	2.9	24	73	13	69	78	0	16	5	0.92
17292185--17292255	21	3.3	21	84	2	88	36	5	15	42	1.71
17292193--17292272	21	3.8	21	86	3	97	36	6	15	42	1.72
17292220--17292272	22	2.5	21	90	6	88	33	7	16	41	1.77
17292199--17292283	43	2.0	43	83	4	109	36	7	16	40	1.76
17292560--17292590	16	1.9	16	93	0	53	35	19	6	38	1.77
17292747--17293087	43	7.9	43	78	9	309	23	12	17	46	1.82
17292747--17293066	87	3.7	87	81	7	355	24	11	16	47	1.79
17292747--17293074	130	2.5	129	79	7	369	24	11	16	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17293369--17293407	16	2.5	15	84	8	51	25	5	2	66	1.25
17293435--17293485	26	2.0	26	92	7	86	19	11	1	66	1.33
17294061--17294095	13	2.8	12	87	8	52	71	0	28	0	0.86
17294359--17294411	23	2.3	24	81	12	67	20	1	3	73	1.08
17294380--17294416	18	2.1	17	90	10	56	24	0	5	70	1.08
17294839--17294888	25	2.0	26	84	7	68	40	6	16	38	1.73
17296691--17296738	23	2.0	24	88	8	71	29	10	0	60	1.30
17296689--17296741	24	2.3	22	84	12	70	26	9	0	64	1.24
17298990--17299981	494	2.0	494	100	0	1984	35	20	14	29	1.92
17301704--17301898	94	2.1	94	89	4	295	35	9	10	44	1.71
17301995--17302038	9	4.9	9	88	0	61	68	11	0	20	1.20
17304367--17304410	22	2.0	22	82	4	54	43	15	6	34	1.74
17305906--17305970	29	2.2	30	91	5	105	41	1	0	56	1.08
17308493--17309360	181	4.8	180	76	3	726	42	8	8	39	1.67
17308531--17309360	361	2.3	360	80	3	925	42	8	8	40	1.66
17309243--17309490	123	2.0	125	86	3	349	38	7	9	44	1.65
17309086--17309661	301	1.9	303	82	5	727	40	8	9	41	1.67
17309366--17314715	361	14.7	359	70	13	1789	41	8	8	41	1.65
17309366--17310440	180	6.0	179	78	6	1012	40	9	8	41	1.68
17310344--17310725	142	2.7	142	91	3	615	42	7	7	43	1.59
17310651--17310689	20	2.0	20	85	10	53	61	2	0	35	1.10
17310675--17311257	324	1.8	322	81	3	742	44	8	7	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17310965--17312338	180	7.6	179	76	6	1072	43	8	8	40	1.65
17311272--17312671	544	2.6	528	79	6	1545	43	7	8	40	1.64
17312345--17314713	181	13.2	180	76	7	1682	41	8	7	41	1.65
17314718--17317719	180	16.7	181	76	7	2210	41	9	9	40	1.69
17314718--17317719	543	5.6	539	76	8	2444	41	9	9	40	1.69
17318221--17318262	20	2.1	20	91	8	68	54	9	4	30	1.53
17317753--17318892	177	6.4	180	78	6	852	42	8	8	40	1.65
17318064--17318794	359	2.0	361	80	5	818	42	8	8	41	1.64
17320635--17320661	6	4.5	6	100	0	54	29	0	0	70	0.88
17326774--17326811	19	1.9	19	89	5	58	76	0	18	5	0.97
17326781--17327074	134	2.2	132	79	6	331	55	6	17	20	1.63
17328002--17328091	42	2.1	42	100	0	180	42	7	20	30	1.80
17328100--17328369	89	3.1	90	65	21	183	46	15	11	26	1.79
17328160--17328307	77	1.9	81	83	5	196	48	15	10	25	1.76
17328100--17328461	170	2.1	176	86	5	504	47	14	11	26	1.79
17328942--17328972	9	3.3	9	91	8	53	70	0	19	9	1.14
17328941--17328973	10	3.4	10	91	8	59	72	0	18	9	1.10
17329371--17329480	23	4.9	22	78	2	94	27	23	19	30	1.98
17329371--17329474	45	2.3	45	83	3	120	27	24	18	29	1.98
17329517--17329557	22	1.9	22	85	5	57	29	19	21	29	1.98
17329632--17329699	22	3.1	22	82	0	73	30	20	19	29	1.97
17329509--17329971	148	3.1	148	83	1	525	32	16	16	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17329769--17329843	22	3.4	22	69	7	62	32	21	13	33	1.92
17329791--17330061	126	2.1	125	77	4	283	32	15	16	35	1.91
17330229--17330293	14	4.7	13	79	11	67	84	6	1	7	0.83
17330228--17330293	28	2.4	28	80	10	82	83	6	1	9	0.87
17330247--17330287	17	2.2	19	87	12	59	85	7	0	7	0.75
17330549--17330604	3	18.7	3	92	0	94	28	0	1	69	0.98
17333578--17334021	181	2.5	181	81	2	493	41	9	9	39	1.70
17334040--17334852	181	4.6	180	74	10	553	40	8	10	40	1.69
17334025--17334958	179	5.2	178	74	9	726	40	7	10	41	1.68
17335044--17336091	181	5.8	180	79	5	931	40	10	8	41	1.69
17335049--17336098	361	2.9	358	80	7	1031	40	10	8	41	1.68
17336137--17336187	25	2.0	26	88	3	77	33	3	13	49	1.61
17336935--17336990	24	2.4	24	83	16	73	41	1	0	57	1.09
17337192--17338170	180	5.5	176	74	11	505	42	6	8	42	1.62
17338132--17338188	16	3.4	16	77	13	69	49	7	8	35	1.61
17338121--17338203	35	2.4	35	100	0	166	45	8	8	37	1.65
17338121--17338205	18	4.9	16	70	12	62	45	8	8	37	1.64
17337941--17338383	215	2.1	213	82	7	522	42	6	9	41	1.63
17338153--17346606	181	47.1	179	72	9	3458	40	8	9	41	1.68
17338153--17346601	539	15.7	532	72	12	2124	40	8	9	41	1.68
17338153--17352606	362	40.0	361	71	11	6820	40	8	9	41	1.68
17340055--17340093	20	2.0	20	90	10	62	48	5	10	35	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17340932--17341240	163	1.9	162	80	4	363	42	8	7	42	1.62
17340446--17352599	537	22.4	540	74	9	6622	40	8	9	41	1.68
17345312--17345350	19	1.9	20	85	15	53	41	10	17	30	1.83
17346605--17352606	181	33.4	180	72	10	2845	39	8	9	42	1.68
17348110--17350352	180	12.5	177	77	8	1655	40	8	9	41	1.68
17350372--17350428	24	2.4	25	91	5	91	54	7	12	26	1.63
17350619--17350657	18	2.2	17	86	13	53	41	2	5	51	1.38
17350580--17351384	180	4.4	182	75	9	506	39	8	8	43	1.66
17352606--17352706	53	1.9	53	85	4	141	37	15	3	42	1.66
17352647--17354060	129	11.0	129	74	7	860	38	17	8	35	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113