genome.fa.s68.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  22  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7634365--7634474	46	2.3	48	87	7	152	56	8	9	26	1.58
7638502--7638549	21	2.3	21	85	7	62	79	0	16	4	0.89
7638523--7638570	15	3.1	15	82	8	53	77	2	16	4	1.03
7639983--7640085	28	3.6	28	72	11	93	33	12	18	35	1.89
7640301--7640448	41	3.6	42	83	8	207	23	10	20	45	1.82
7641521--7641565	12	3.5	13	80	14	58	17	0	8	73	1.08
7641510--7641566	13	4.7	12	79	10	62	17	0	8	73	1.07
7641766--7641801	18	2.0	18	94	0	63	80	5	0	13	0.88
7643689--7643718	8	3.8	8	100	0	60	90	0	0	10	0.47
7645158--7645198	19	2.0	21	86	9	59	39	2	2	56	1.26
7649721--7649745	11	2.3	11	100	0	50	28	0	40	32	1.57
7655361--7655420	27	2.2	28	79	8	70	51	1	1	45	1.21
7655477--7655547	30	2.3	30	78	4	79	53	5	0	40	1.24
7655779--7655814	17	2.0	19	89	10	58	66	0	13	19	1.24
7664237--7664320	26	3.0	28	79	10	100	45	7	13	34	1.70
7668083--7668142	27	2.2	28	78	3	68	50	0	5	45	1.23
7669237--7669296	28	2.1	28	84	6	77	53	0	0	46	1.00
7672963--7673001	19	2.1	18	85	4	51	64	10	2	23	1.37
7674163--7674215	16	3.7	16	72	27	64	41	11	16	30	1.84
7674156--7674213	26	2.2	26	100	0	116	36	12	18	32	1.88
7677033--7677111	26	2.9	28	79	9	99	46	7	13	31	1.72
7677034--7677121	26	3.1	27	80	11	97	47	7	11	32	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7693180--7693221	22	2.0	20	86	9	57	61	2	4	30	1.29
7696492--7696615	42	3.0	42	91	2	178	29	21	17	30	1.96
7700851--7700890	2	20.5	2	94	5	73	50	0	0	50	1.00
7702967--7703033	29	2.3	31	82	15	88	40	0	1	58	1.07
7704372--7704410	18	2.3	17	86	8	53	69	2	5	23	1.21
7704370--7704416	16	2.9	16	79	14	51	65	2	6	25	1.27
7704687--7704745	26	2.3	25	88	8	84	49	1	0	49	1.11
7704830--7704868	18	2.1	18	85	4	51	53	2	0	43	1.14
7706481--7706520	15	2.7	15	84	0	53	30	0	35	35	1.58
7711850--7711935	30	2.9	29	81	13	86	51	2	4	41	1.35
7713628--7713974	59	5.9	58	82	11	395	34	12	7	46	1.69
7713628--7713980	116	3.0	118	88	6	500	33	12	7	46	1.69
7713988--7714059	11	6.3	11	76	13	65	81	1	4	12	0.89
7713988--7714066	17	4.9	15	77	10	68	81	1	5	12	0.92
7713987--7714055	17	4.2	16	78	14	70	82	1	4	11	0.87
7713986--7714067	6	14.0	6	71	14	64	80	1	4	13	0.93
7713986--7714124	5	26.8	5	70	17	54	74	2	3	19	1.06
7713986--7714066	11	7.5	11	74	21	64	80	1	4	13	0.94
7713986--7714055	34	2.2	31	87	12	97	81	1	4	12	0.90
7715127--7715178	14	3.8	14	79	2	52	75	5	0	19	1.01
7715128--7715178	13	3.8	13	80	17	59	76	5	0	17	0.98
7715199--7715237	21	1.9	21	89	5	62	20	28	30	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7720724--7720750	6	4.5	6	100	0	54	70	0	0	29	0.88
7723416--7723473	29	2.0	29	82	0	71	53	20	6	18	1.67
7734344--7734368	4	6.2	4	100	0	50	0	0	24	76	0.80
7734989--7735022	17	1.9	17	88	5	50	64	0	2	32	1.08
7735010--7735082	12	5.4	14	75	21	59	56	0	1	42	1.08
7735042--7735073	14	2.3	15	89	10	50	56	0	0	43	0.99
7737115--7737185	36	2.0	36	88	0	106	52	19	8	19	1.72
7739809--7740286	144	3.4	145	91	2	767	31	18	22	27	1.97
7744815--7744851	18	2.0	19	85	15	51	48	10	8	32	1.67
7745005--7745049	22	2.0	23	86	4	65	53	0	2	44	1.13
7747250--7747293	3	14.7	3	100	0	88	65	0	0	34	0.93
7749089--7749128	16	2.5	16	91	0	62	40	22	2	35	1.68
7751167--7751201	18	1.9	18	88	0	52	31	31	5	31	1.81
7755628--7755669	20	2.0	20	82	13	50	71	0	2	26	0.98
7755725--7755767	15	2.9	15	76	13	52	53	0	0	46	1.00
7757889--7757938	26	1.9	26	83	0	64	54	0	4	42	1.19
7758148--7758201	20	2.6	21	77	17	58	64	5	0	29	1.16
7758194--7758263	36	1.9	36	85	0	95	60	18	2	18	1.49
7760878--7761281	144	2.8	145	80	13	477	32	18	21	27	1.97
7786142--7786190	4	12.2	4	91	0	53	59	18	0	22	1.38
7792093--7792147	25	2.3	23	81	12	65	40	10	1	47	1.49
7797179--7797203	2	12.5	2	100	0	50	48	52	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7802167--7802310	72	2.0	72	90	0	225	31	18	34	15	1.93
7804670--7804803	64	2.1	63	81	13	150	44	5	6	43	1.53
7805018--7805148	61	2.1	61	84	4	165	47	5	4	42	1.46
7805342--7805391	24	2.1	24	92	0	82	40	6	2	52	1.38
7806054--7806205	79	1.9	82	83	6	204	44	7	7	41	1.60
7806053--7806221	79	2.1	81	80	7	193	42	7	7	42	1.60
7808571--7808633	16	3.8	16	75	6	63	66	0	1	31	1.01
7808573--7808633	25	2.5	25	76	12	72	67	0	1	31	1.01
7816608--7816680	21	3.5	20	76	10	67	46	0	2	50	1.15
7816611--7816687	5	15.4	5	76	10	52	42	0	2	54	1.14
7827527--7827572	6	7.7	6	95	0	83	32	34	30	2	1.70
7829740--7829775	15	2.4	15	85	0	54	0	5	11	83	0.80
7830550--7830614	33	2.0	33	87	6	96	44	0	6	49	1.27
7847237--7847626	196	2.0	195	96	0	717	33	10	19	36	1.86
7847493--7847667	93	1.9	92	87	6	257	33	10	18	37	1.85
7848010--7848083	24	3.0	24	79	11	96	37	22	9	29	1.86
7848013--7848083	25	2.9	24	83	6	97	38	23	8	29	1.85
7851197--7851244	21	2.3	21	89	3	71	47	8	22	20	1.77
7852617--7852664	22	2.1	23	84	3	62	39	2	4	54	1.32
7852629--7852681	21	2.4	21	81	12	54	39	3	0	56	1.17
7853296--7853324	2	14.5	2	100	0	58	51	0	0	48	1.00
7869066--7869103	17	2.3	17	86	4	51	44	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7879459--7879488	13	2.3	13	94	0	51	33	3	0	63	1.11
7880232--7880290	24	2.5	25	84	10	72	44	6	0	49	1.29
7880251--7880307	24	2.3	25	78	6	62	49	5	0	45	1.24
7880530--7880578	24	2.0	24	100	0	98	20	20	20	38	1.93
7882744--7882769	2	13.0	2	100	0	52	50	0	0	50	1.00
7886384--7886633	125	2.0	126	89	2	387	28	20	14	36	1.92
7904813--7904852	21	1.9	21	89	0	62	50	2	5	42	1.37
7906310--7906349	15	2.7	15	81	14	55	42	0	0	57	0.98
7906319--7906349	14	2.1	15	94	5	55	48	0	0	51	1.00
7906747--7906786	15	2.7	15	88	0	62	60	0	0	40	0.97
7906698--7906794	35	2.7	36	71	24	87	54	0	1	44	1.06
7906733--7906792	21	2.9	21	74	13	61	55	0	0	45	0.99
7907538--7907564	13	2.1	13	100	0	54	44	0	0	55	0.99
7920886--7920920	18	1.9	18	88	0	52	62	0	0	37	0.95
7921308--7921355	21	2.3	22	78	10	55	33	0	2	64	1.05
7921339--7921377	20	1.9	21	89	5	62	51	0	0	48	1.00
7930162--7930186	2	12.5	2	100	0	50	52	48	0	0	1.00
7939071--7939121	23	2.1	23	82	7	57	52	5	23	17	1.66
7940476--7940605	30	4.3	31	76	7	99	52	0	5	41	1.30
7941716--7941746	2	15.5	2	100	0	62	48	0	0	51	1.00
7941938--7942000	23	2.7	22	78	9	63	52	6	1	39	1.37
7945492--7945543	27	1.9	27	84	7	70	44	15	9	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7948595--7948699	52	2.0	52	96	0	192	38	16	12	33	1.86
7948615--7948697	26	3.2	25	67	13	69	38	16	10	33	1.84
7954371--7954424	20	2.7	19	77	8	63	57	3	0	38	1.17
7954640--7954680	12	3.7	12	81	18	52	68	0	4	26	1.10
7954656--7954719	27	2.4	26	77	10	67	62	0	0	37	0.95
7959321--7959346	12	2.2	12	100	0	52	30	30	23	15	1.95
7964038--7964104	30	2.2	32	77	17	81	38	1	0	59	1.06
7964097--7964147	23	2.3	23	82	3	59	54	0	0	45	0.99
7964113--7964146	17	1.9	17	88	5	50	50	0	0	50	1.00
7967562--7967595	17	2.1	16	88	5	50	85	8	5	0	0.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113