genome.fa.s68.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  83  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17352647--17354014	388	3.5	380	75	10	1064	38	17	7	35	1.79
17353762--17354361	301	2.0	300	80	6	687	36	17	10	35	1.84
17354057--17354570	129	4.0	131	73	9	387	37	17	8	35	1.81
17354632--17355800	130	9.1	128	73	9	744	37	16	9	37	1.80
17354789--17354850	26	2.2	29	80	11	76	38	19	3	38	1.68
17354063--17355138	572	1.9	567	79	7	1207	38	16	8	36	1.80
17354615--17355487	259	3.4	256	77	9	654	37	15	9	37	1.80
17355820--17358657	130	22.0	128	74	10	1694	37	7	16	38	1.78
17355819--17358069	516	4.4	515	78	8	1953	37	8	16	37	1.79
17358622--17358702	26	3.2	26	64	22	71	39	2	12	45	1.55
17358605--17358728	51	2.4	51	95	2	221	41	1	13	43	1.54
17358684--17362157	129	26.9	128	75	7	2039	36	7	17	38	1.78
17358655--17362157	387	9.0	383	75	6	2592	36	7	17	38	1.78
17358671--17362148	517	6.7	518	74	9	1917	36	7	17	38	1.78
17362572--17362840	130	2.1	130	79	6	287	35	8	17	37	1.81
17362907--17363207	131	2.3	131	80	6	326	32	6	18	42	1.77
17362986--17363594	131	4.7	129	72	9	419	34	8	17	39	1.79
17364306--17364554	130	1.9	129	83	7	317	38	6	13	41	1.71
17365683--17365857	63	2.8	64	78	12	175	38	19	9	32	1.84
17369461--17369491	3	10.3	3	100	0	62	35	0	0	64	0.94
17371835--17371868	16	2.2	15	89	5	50	0	5	5	88	0.64
17371993--17372203	70	3.0	70	77	4	194	48	12	18	19	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17372219--17372312	35	2.7	34	73	4	98	52	11	14	21	1.74
17372184--17372364	70	2.6	70	83	1	229	50	12	16	20	1.77
17371916--17372470	245	2.3	244	82	5	620	48	12	18	21	1.80
17372184--17372399	70	3.1	68	79	5	218	49	12	17	21	1.79
17372293--17372630	105	3.2	105	79	4	326	47	14	17	20	1.82
17372387--17372665	105	2.7	104	82	4	310	47	14	17	20	1.83
17372711--17373204	70	7.1	70	71	5	284	53	13	13	19	1.73
17372706--17373204	105	4.8	104	78	5	409	53	13	13	19	1.73
17372723--17373225	35	14.4	35	69	5	221	53	12	13	19	1.72
17373474--17373539	18	3.7	18	89	0	105	42	10	19	27	1.84
17373724--17373812	42	2.2	40	82	8	99	32	10	22	34	1.88
17374013--17374722	67	10.7	67	74	8	270	26	15	20	38	1.92
17373902--17374706	34	24.3	32	71	13	226	26	16	20	37	1.93
17373905--17374722	101	8.2	101	74	8	498	26	16	19	37	1.93
17373902--17374717	33	24.6	33	73	9	505	26	16	20	37	1.93
17374960--17375026	18	3.7	18	97	0	125	34	11	28	25	1.91
17375044--17375589	80	6.7	81	74	12	350	32	8	12	46	1.72
17382673--17382712	20	2.0	20	90	0	62	15	5	60	20	1.53
17383466--17383704	64	3.8	62	74	8	171	36	11	9	42	1.73
17383472--17383817	189	1.8	187	82	1	440	35	10	10	43	1.74
17383980--17384107	67	2.0	64	80	9	143	31	10	11	46	1.73
17384509--17384546	3	13.0	3	94	5	69	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17386990--17387085	49	2.0	49	91	0	156	33	8	8	50	1.63
17395220--17395257	17	2.3	16	90	4	58	63	10	2	23	1.39
17400864--17400905	15	2.8	16	79	13	54	33	14	9	42	1.78
17417045--17417192	55	2.9	48	76	13	152	27	14	10	48	1.75
17417055--17417173	55	2.2	55	86	4	168	26	15	9	48	1.74
17417296--17417361	19	3.5	19	78	0	69	37	42	3	16	1.64
17417352--17417395	19	2.4	18	88	3	61	47	38	0	13	1.43
17417353--17417475	6	19.0	6	67	25	56	48	32	0	17	1.53
17417352--17417475	7	19.0	7	70	19	72	48	33	0	17	1.53
17417412--17417460	25	1.9	26	95	4	91	48	32	0	18	1.48
17419212--17419259	24	2.0	24	95	0	87	37	14	10	37	1.81
17419408--17419477	35	2.0	35	88	0	104	34	27	11	27	1.91
17419480--17419586	37	2.9	36	79	12	101	32	23	7	36	1.83
17419505--17419607	37	2.8	37	78	1	107	33	23	8	33	1.86
17423482--17423578	10	9.8	10	73	14	51	79	0	13	7	0.93
17423482--17423579	32	3.1	31	80	7	99	79	0	13	7	0.92
17423509--17423579	20	3.4	21	79	12	83	83	0	9	7	0.82
17423498--17423574	14	5.5	13	74	19	57	81	0	10	7	0.86
17423498--17423579	10	7.9	10	75	15	60	81	0	10	7	0.86
17423914--17423943	15	2.0	15	93	0	51	83	0	10	6	0.81
17425524--17425732	41	5.1	41	71	9	142	39	17	10	32	1.84
17425684--17425827	42	3.5	41	76	5	137	42	11	6	40	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17426134--17426159	2	13.0	2	100	0	52	50	0	0	50	1.00
17432332--17432420	24	3.8	24	72	15	71	50	1	1	47	1.15
17432369--17432420	24	2.1	26	85	7	72	53	1	0	44	1.11
17435410--17435439	2	15.0	2	100	0	60	0	50	0	50	1.00
17440626--17440669	19	2.4	18	84	3	61	54	0	0	45	0.99
17442973--17443055	38	2.2	39	78	10	91	50	1	6	42	1.34
17446569--17446622	17	3.2	16	84	10	63	20	0	27	51	1.47
17452724--17452780	28	2.0	28	93	0	96	31	10	7	50	1.63
17452938--17452991	17	3.2	16	84	10	63	20	0	27	51	1.47
17454401--17454450	23	2.2	23	92	0	82	14	14	58	14	1.65
17454516--17454563	3	15.3	3	79	16	53	37	0	0	62	0.95
17454501--17454553	26	2.1	25	86	10	72	35	0	0	64	0.94
17461765--17461815	26	2.0	26	84	7	68	9	19	1	68	1.27
17463550--17463587	6	6.3	6	90	0	58	86	10	0	2	0.66
17466661--17466688	2	14.0	2	100	0	56	0	50	0	50	1.00
17478858--17478928	22	3.2	21	76	7	61	39	7	14	39	1.73
17479085--17479133	22	2.2	22	85	0	62	30	14	14	40	1.85
17485854--17485893	18	2.3	17	91	4	62	7	7	0	85	0.76
17485950--17485978	11	2.5	12	94	5	51	31	0	0	68	0.89
17487556--17487612	23	2.5	23	94	0	105	42	12	15	29	1.84
17489571--17489613	19	2.3	19	87	0	59	13	9	0	76	1.01
17489554--17489617	12	4.9	12	77	11	56	12	10	0	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17494223--17494260	16	2.3	17	90	4	60	60	7	0	31	1.25
17495098--17495130	16	2.1	16	88	5	50	48	3	3	45	1.33
17495541--17495587	6	7.8	6	79	9	51	10	6	2	80	0.96
17495597--17495633	16	2.2	18	85	9	51	35	0	0	64	0.94
17495561--17495638	18	4.4	18	70	13	63	25	1	1	71	1.01
17507253--17507317	34	1.9	34	87	0	94	33	12	16	36	1.87
17507287--17507364	40	2.0	40	86	0	111	29	12	15	42	1.84
17512255--17512283	2	14.5	2	100	0	58	48	0	0	51	1.00
17518911--17518956	16	2.9	15	90	6	65	23	4	26	45	1.71
17519434--17519478	19	2.4	18	88	7	63	4	22	40	33	1.74
17520446--17520491	22	2.1	22	88	4	67	2	4	8	84	0.83
17520451--17520491	17	2.4	17	91	0	64	0	4	9	85	0.73
17520658--17521598	48	19.7	48	86	4	1235	35	23	11	29	1.90
17520658--17521598	143	6.6	143	87	4	1281	35	23	11	29	1.90
17520658--17521598	191	4.9	191	89	3	1369	35	23	11	29	1.90
17533583--17533645	16	3.8	17	81	6	76	23	4	26	44	1.73
17535620--17535671	27	1.9	27	92	0	86	32	26	5	34	1.80
17537775--17537815	10	4.0	10	83	3	55	24	0	4	70	1.06
17540652--17540910	144	1.8	143	79	5	308	47	8	9	33	1.68
17542444--17542544	51	2.0	51	92	0	166	23	18	10	46	1.81
17542536--17542585	19	2.6	19	83	0	64	44	38	0	18	1.50
17542573--17542622	13	3.9	13	79	10	50	42	38	2	18	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17542587--17542654	30	2.2	31	86	2	93	42	35	4	17	1.69
17547288--17547407	62	2.0	61	86	1	168	22	18	19	40	1.92
17547350--17547622	43	6.4	42	75	7	176	26	16	17	39	1.90
17547357--17547591	86	2.7	85	79	5	224	25	15	17	41	1.89
17548597--17548636	17	2.4	17	91	0	62	17	2	5	75	1.10
17559067--17559289	43	5.2	43	82	2	198	28	11	14	45	1.80
17559068--17559214	44	3.4	44	85	1	197	27	10	16	45	1.80
17559067--17559281	87	2.5	87	80	0	234	28	11	15	44	1.81
17559836--17559882	19	2.5	18	77	16	51	34	23	10	31	1.89
17567271--17567303	6	5.5	6	100	0	66	84	0	0	15	0.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113