genome.fa.s68.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  101  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20172797--20172844	10	4.7	10	79	5	51	2	14	0	83	0.74
20173673--20173717	18	2.5	17	82	13	54	2	20	4	73	1.11
20173674--20173717	20	2.3	19	88	7	63	2	18	4	75	1.09
20176981--20177483	200	2.5	199	84	3	618	41	9	13	35	1.77
20180902--20180939	8	4.9	8	87	3	51	42	0	2	55	1.14
20181716--20181762	16	2.8	17	75	18	53	46	6	0	46	1.28
20182242--20182908	235	2.8	235	79	6	706	45	12	9	32	1.74
20184352--20184542	102	1.9	102	85	2	267	34	8	13	43	1.73
20187148--20187214	20	3.4	19	75	19	57	32	0	0	67	0.91
20187662--20187868	103	2.0	101	89	1	315	47	12	18	21	1.82
20187733--20187802	34	2.1	34	83	0	86	48	11	22	17	1.79
20187766--20187988	68	3.3	68	68	7	202	45	13	18	22	1.84
20187844--20188055	66	3.2	66	66	10	178	43	13	21	21	1.86
20187744--20188129	134	2.9	134	90	0	576	44	13	19	22	1.86
20188908--20188961	18	3.3	18	70	24	64	59	11	7	22	1.56
20188906--20188969	31	2.1	31	100	0	128	62	12	6	18	1.50
20189638--20189664	2	13.5	2	100	0	54	51	0	0	48	1.00
20191334--20191372	21	1.9	20	84	5	51	10	2	10	76	1.10
20192197--20192224	2	14.0	2	100	0	56	50	0	0	50	1.00
20193977--20194121	62	2.4	62	80	3	168	33	6	13	47	1.67
20194617--20194641	11	2.3	11	100	0	50	0	16	0	84	0.63
20195458--20195672	84	2.5	83	79	6	236	37	20	14	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20195729--20195788	31	1.9	31	86	0	84	31	15	20	33	1.93
20195755--20195909	84	1.8	84	87	2	231	38	15	15	30	1.89
20197238--20197284	10	4.7	10	82	17	62	0	19	0	80	0.70
20197237--20197287	18	2.9	18	85	8	61	0	19	0	80	0.71
20197244--20197287	13	3.5	13	84	12	56	0	18	0	81	0.68
20197238--20197285	21	2.4	20	89	6	71	0	18	0	81	0.70
20202209--20202254	17	2.6	18	82	6	58	71	2	8	17	1.21
20202209--20202246	9	4.3	9	83	6	51	71	2	7	18	1.23
20202514--20202553	20	1.9	21	85	10	55	5	17	2	75	1.10
20203161--20203212	21	2.4	21	84	12	70	0	9	9	80	0.90
20204548--20204586	18	2.2	17	86	13	53	76	0	5	17	0.96
20204553--20204593	18	2.2	19	83	12	50	75	0	9	14	1.04
20207525--20207559	2	18.0	2	94	5	63	48	0	0	51	1.00
20208375--20208420	24	1.9	24	82	8	58	43	4	8	43	1.55
20212314--20212470	52	3.0	52	85	3	183	26	26	8	38	1.85
20213388--20213544	52	3.0	51	83	3	188	26	26	9	38	1.87
20213569--20213610	11	3.8	11	93	0	75	50	28	0	21	1.49
20213569--20213611	22	2.0	22	100	0	86	48	27	0	23	1.51
20213704--20213848	52	2.8	52	80	6	152	25	22	8	42	1.82
20213873--20213914	11	3.8	11	93	0	75	50	28	0	21	1.49
20213873--20213915	22	2.0	22	100	0	86	48	27	0	23	1.51
20214818--20214857	21	2.0	20	95	5	71	45	10	15	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20214798--20214909	53	2.1	56	91	5	185	41	9	17	31	1.82
20214859--20214907	24	2.0	24	100	0	98	38	12	20	28	1.89
20215110--20215167	31	1.9	30	92	3	98	43	18	13	24	1.87
20215510--20215571	20	3.1	20	79	9	81	62	0	8	29	1.23
20215519--20215667	4	39.0	4	70	12	52	65	0	4	30	1.13
20215567--20215660	3	28.7	3	77	18	73	65	0	3	30	1.08
20215505--20215618	41	2.9	38	82	12	124	64	0	6	29	1.18
20215518--20215660	20	7.0	20	72	14	96	64	0	4	30	1.15
20215652--20215710	27	2.1	28	84	9	77	74	8	0	16	1.05
20215663--20215701	18	2.3	16	86	8	51	74	10	0	15	1.07
20215892--20216181	45	6.6	44	80	6	286	38	20	16	25	1.92
20215942--20216282	85	4.0	84	76	10	237	37	19	15	27	1.92
20216032--20216288	41	6.1	41	79	8	207	34	19	16	29	1.94
20217295--20217356	9	7.1	9	73	14	58	6	12	0	80	0.89
20217299--20217352	16	3.3	16	82	10	65	7	11	0	81	0.87
20224570--20224600	15	2.1	15	93	0	53	45	6	29	19	1.75
20227822--20227965	74	1.9	74	87	5	211	40	14	4	40	1.67
20227896--20228201	57	5.3	58	87	7	442	39	13	6	41	1.70
20227893--20228201	115	2.7	116	90	4	505	38	12	6	41	1.69
20227896--20228201	58	5.3	58	87	5	458	39	13	6	41	1.70
20228224--20228265	6	7.2	6	94	5	77	83	0	0	16	0.65
20228306--20228337	4	8.5	4	93	6	50	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20228711--20228747	12	3.1	12	96	0	65	51	21	8	18	1.72
20229103--20229171	20	3.4	19	70	18	59	62	0	8	28	1.25
20229102--20229171	22	3.3	21	69	23	65	62	0	8	28	1.24
20229085--20229165	42	1.9	42	85	9	112	64	2	8	24	1.35
20229167--20229225	17	3.6	17	73	19	63	64	0	5	30	1.15
20230040--20230069	10	2.9	10	95	5	51	70	0	10	20	1.16
20230014--20230065	25	2.2	22	83	10	59	69	1	7	21	1.24
20230282--20230332	22	2.3	22	86	6	68	33	21	17	27	1.96
20230444--20230800	84	4.3	84	78	4	346	37	18	14	29	1.90
20230476--20230777	167	1.8	167	82	5	394	39	18	11	29	1.86
20230788--20230852	31	2.1	31	91	0	103	27	12	23	36	1.90
20232314--20232351	16	2.5	15	83	8	51	0	18	0	81	0.69
20232305--20232356	26	2.0	26	92	3	88	0	21	0	78	0.74
20232307--20232356	13	4.1	13	83	16	63	0	20	0	80	0.72
20232839--20232895	21	2.7	20	77	20	62	29	5	7	57	1.47
20233037--20233080	5	8.2	5	80	14	52	79	0	2	18	0.83
20233035--20233092	17	3.4	17	81	11	66	79	0	5	15	0.90
20233042--20233090	23	2.2	22	85	10	64	79	0	6	14	0.91
20236854--20236884	2	15.5	2	100	0	62	51	0	0	48	1.00
20237869--20237893	1	25.0	1	100	0	50	0	0	0	100	0.00
20239442--20239472	2	15.5	2	100	0	62	51	0	0	48	1.00
20241233--20241354	63	2.0	63	85	3	167	36	3	13	47	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20242218--20242262	22	2.0	24	86	8	67	71	4	6	17	1.25
20242654--20243032	84	4.5	84	75	8	342	35	18	16	29	1.92
20242654--20243032	167	2.3	166	77	7	399	35	18	16	29	1.92
20244532--20244575	15	2.9	16	81	18	58	4	15	0	79	0.89
20244531--20244575	16	2.9	16	83	9	58	4	15	0	80	0.87
20244522--20244560	13	3.1	13	82	17	55	2	20	0	76	0.90
20249485--20249543	17	3.4	17	77	17	50	72	5	6	15	1.23
20250476--20250515	21	1.9	21	85	10	55	2	7	7	82	0.92
20251665--20251703	20	1.9	21	89	5	62	33	10	10	46	1.72
20251859--20251904	18	2.6	18	89	6	67	78	0	6	15	0.95
20251853--20251904	24	2.2	23	80	19	63	78	0	5	15	0.92
20251859--20251905	19	2.5	19	82	6	60	78	0	6	14	0.93
20252832--20253043	60	3.5	60	91	5	308	34	16	7	41	1.77
20255602--20255659	9	6.9	8	83	14	64	10	1	3	84	0.81
20255619--20255659	9	4.7	9	93	6	75	9	0	0	90	0.46
20255603--20255659	17	3.3	17	87	4	78	8	1	3	85	0.77
20255739--20255787	7	5.9	9	79	20	54	0	10	8	81	0.87
20255748--20255790	17	2.4	18	80	3	61	0	9	6	83	0.80
20255741--20255786	9	5.8	8	82	14	51	0	8	8	82	0.84
20255509--20255869	132	2.7	136	84	4	462	31	14	11	42	1.81
20255802--20255925	41	2.9	42	84	4	142	37	24	19	19	1.94
20255855--20255939	41	2.0	42	97	2	163	32	24	18	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20257167--20257196	16	1.9	16	93	6	53	10	20	0	70	1.16
20257199--20257255	13	4.2	13	82	15	62	3	17	0	78	0.88
20257220--20257266	17	3.1	15	83	16	62	6	14	0	78	0.93
20261134--20261304	60	2.8	60	82	7	220	35	14	6	43	1.70
20266141--20266177	2	19.0	2	94	5	67	48	0	0	51	1.00
20270918--20271074	52	3.0	52	87	1	208	25	26	9	38	1.87
20271091--20271137	22	2.1	22	88	0	67	51	21	4	23	1.65
20271099--20271140	11	3.8	11	90	0	66	50	26	2	21	1.61
20271099--20271141	22	2.0	22	95	0	77	48	25	2	23	1.62
20272013--20272169	52	3.0	51	82	3	179	26	24	9	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113