genome.fa.s68.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  28  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9465680--9465730	25	2.1	25	86	13	72	74	0	19	5	1.02
9466831--9466885	23	2.5	22	77	11	58	40	7	16	36	1.76
9467439--9467718	41	6.7	41	86	4	364	25	16	22	36	1.94
9467419--9467718	83	3.6	83	90	4	442	24	16	22	36	1.94
9467439--9467718	124	2.2	127	89	1	422	25	16	22	36	1.94
9467726--9467791	12	5.5	11	73	25	53	84	9	3	3	0.82
9467725--9467791	10	6.5	10	73	20	50	85	8	2	2	0.81
9468002--9468119	12	9.9	12	73	21	81	30	0	3	65	1.15
9467995--9468119	26	4.7	26	75	17	89	29	0	4	65	1.16
9467991--9468104	42	2.7	43	83	8	135	29	0	3	65	1.15
9467991--9468119	46	2.8	46	82	13	126	29	0	3	65	1.15
9467991--9468103	16	7.3	15	73	17	90	29	0	3	66	1.14
9469033--9469091	14	4.0	15	75	16	52	20	0	1	77	0.85
9469046--9469089	4	11.8	4	77	22	51	20	0	0	79	0.73
9469046--9469089	23	1.9	23	90	9	72	20	0	0	79	0.73
9469111--9469150	17	2.3	18	86	4	55	12	5	2	80	0.98
9469174--9469403	124	1.9	123	88	4	347	45	5	12	36	1.64
9469175--9469401	61	3.7	59	83	5	274	46	4	12	36	1.63
9471377--9471482	15	6.8	15	70	14	63	18	5	27	48	1.71
9471455--9471524	8	8.6	8	69	3	50	18	1	27	52	1.54
9471455--9471524	16	4.3	16	76	7	61	18	1	27	52	1.54
9471930--9472016	42	2.1	42	91	0	138	40	13	9	36	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9474503--9474588	35	2.5	35	82	0	100	48	11	19	19	1.79
9474657--9475005	70	5.0	69	68	6	168	51	11	16	20	1.75
9476404--9476450	23	2.0	23	100	0	94	29	12	23	34	1.92
9476406--9476540	23	5.9	23	75	11	89	29	15	21	33	1.94
9476436--9476604	23	7.1	23	70	15	76	28	15	23	33	1.95
9476570--9476618	23	2.1	23	84	0	62	30	12	24	32	1.92
9478833--9478886	12	4.1	12	74	21	54	22	0	11	66	1.22
9479003--9479241	118	2.0	118	99	0	469	48	12	13	25	1.78
9480087--9480111	2	12.5	2	100	0	50	48	0	0	52	1.00
9480163--9480214	18	2.6	22	80	20	69	34	5	11	48	1.63
9480292--9480322	14	2.2	14	94	0	53	48	0	3	48	1.17
9482913--9482945	16	2.0	17	88	5	50	45	3	18	33	1.65
9484129--9484220	45	2.0	45	81	8	107	25	17	10	46	1.80
9490904--9490952	2	24.5	2	91	0	80	46	2	2	48	1.25
9500442--9500619	88	2.0	89	91	3	288	42	8	18	30	1.80
9502407--9502448	11	3.8	11	83	0	57	26	0	21	52	1.47
9502405--9502449	22	2.0	22	95	0	81	31	0	20	48	1.49
9502472--9502627	52	3.0	51	86	2	213	40	8	25	25	1.84
9502741--9502777	18	2.1	18	94	0	65	13	0	35	51	1.41
9503130--9503214	31	2.7	31	85	0	107	30	20	23	25	1.98
9503500--9503539	11	3.6	11	82	0	53	27	0	22	50	1.50
9503566--9503721	52	3.0	51	85	2	204	41	8	23	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9503835--9503871	18	2.1	18	94	0	65	13	0	35	51	1.41
9504224--9504308	31	2.7	31	83	0	107	30	21	23	24	1.99
9504595--9504637	11	3.9	11	84	0	59	25	0	23	51	1.49
9504596--9504638	22	2.0	22	95	0	77	27	0	20	51	1.48
9504661--9504816	52	3.0	51	85	2	204	41	8	23	25	1.83
9506315--9506380	32	2.0	33	88	2	98	42	13	6	37	1.69
9507173--9507198	2	13.0	2	100	0	52	50	0	0	50	1.00
9507098--9507258	83	2.0	82	92	1	268	37	12	12	37	1.81
9509365--9509413	21	2.2	23	89	7	75	42	14	18	24	1.87
9510951--9511008	24	2.3	26	88	5	84	39	6	6	46	1.57
9511533--9511576	19	2.5	17	82	13	54	36	27	6	29	1.83
9515916--9515944	3	9.7	3	100	0	58	0	34	0	65	0.93
9517070--9517115	21	2.2	21	84	7	58	6	4	8	80	1.01
9517070--9517115	19	2.5	18	86	6	65	6	4	8	80	1.01
9520694--9520750	30	1.9	30	88	0	87	40	7	3	49	1.47
9523002--9523081	40	2.0	40	100	0	160	40	15	7	37	1.75
9526981--9527096	3	42.3	3	65	20	58	31	3	2	62	1.26
9526984--9527089	5	21.2	5	74	18	69	33	3	2	60	1.29
9526983--9527081	18	5.3	18	71	17	76	33	4	3	59	1.31
9527075--9527116	15	2.9	14	83	13	50	9	7	0	83	0.81
9527885--9527959	10	7.5	10	70	16	57	12	1	4	82	0.86
9530180--9530274	7	15.2	6	74	20	54	16	3	6	73	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9530187--9530256	20	3.5	20	74	21	67	17	1	8	72	1.16
9530194--9530239	11	3.8	12	91	8	67	15	0	13	71	1.14
9530219--9530274	24	2.3	25	78	9	62	19	5	3	71	1.21
9532869--9532900	2	16.0	2	100	0	64	0	50	0	50	1.00
9532900--9532925	2	13.0	2	100	0	52	50	0	0	50	1.00
9539099--9539126	11	2.5	11	100	0	56	32	7	7	53	1.55
9544363--9544430	22	3.0	22	76	18	68	55	1	0	42	1.08
9544395--9544439	22	2.0	22	83	8	56	53	2	0	44	1.13
9550708--9550736	3	9.7	3	100	0	58	31	0	0	68	0.89
9551499--9551548	18	2.7	18	81	6	55	24	2	2	72	1.06
9551795--9551821	2	13.5	2	100	0	54	48	0	0	51	1.00
9552082--9552118	2	18.5	2	100	0	74	48	0	0	51	1.00
9557194--9557231	19	2.1	18	85	14	51	39	0	2	57	1.12
9562708--9562744	13	3.0	13	80	15	51	35	10	0	54	1.36
9562940--9563048	44	2.5	44	83	1	146	45	21	10	22	1.81
9562966--9563440	44	11.2	43	77	8	318	44	16	12	26	1.83
9562983--9563479	40	11.9	40	76	9	241	44	16	13	26	1.84
9563089--9563484	212	1.9	206	85	7	548	42	16	14	26	1.86
9564537--9564587	10	5.6	9	80	19	61	3	11	0	84	0.75
9564537--9564588	19	2.8	18	86	13	79	5	11	0	82	0.82
9564555--9564586	8	3.9	8	95	4	55	0	12	0	87	0.54
9564524--9564586	16	3.8	16	75	19	56	6	12	0	80	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9575312--9575638	182	1.8	182	82	6	421	37	8	7	47	1.61
9576485--9576529	16	2.8	15	80	12	54	15	4	0	80	0.87
9578941--9578984	18	2.4	18	92	0	70	29	25	4	40	1.75
9582428--9582467	16	2.4	16	87	4	53	22	0	7	70	1.12
9582457--9582506	24	2.1	24	96	0	91	22	0	10	68	1.19
9582604--9582767	11	15.4	11	70	17	62	34	4	8	52	1.52
9582661--9582769	46	2.4	46	79	14	134	35	1	8	54	1.41
9583874--9583912	19	2.1	19	90	0	60	61	7	2	28	1.37
9584588--9584636	25	1.9	25	87	4	71	44	0	8	46	1.33
9589180--9589233	28	1.9	28	85	7	74	37	0	1	61	1.07
9598278--9598332	28	1.9	28	82	10	67	32	7	5	54	1.51
9600873--9600917	22	2.0	22	86	0	63	55	11	20	13	1.68
9602506--9602545	21	2.0	20	85	5	53	40	5	0	55	1.22
9602935--9602982	19	2.5	19	81	18	64	33	0	2	64	1.05
9603792--9603843	17	3.0	17	85	2	68	48	0	0	51	1.00
9603770--9603843	21	3.5	21	75	8	62	44	0	0	55	0.99
9603873--9603947	31	2.3	32	78	14	84	62	2	4	30	1.27
9603873--9603947	33	2.3	33	77	8	84	62	2	4	30	1.27
9604885--9604924	20	2.0	20	85	9	55	37	2	0	60	1.11
9604921--9604957	18	2.2	17	90	9	58	45	5	0	48	1.25
9606085--9606127	2	21.5	2	100	0	86	48	0	0	51	1.00
9606577--9606624	15	3.2	15	76	5	53	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9607160--9607202	21	2.0	21	86	8	61	53	0	13	32	1.41
9607363--9607392	2	15.0	2	92	0	51	50	3	0	46	1.18
9611096--9611124	9	3.2	9	100	0	58	0	10	24	65	1.23
9612933--9612961	13	2.1	14	93	6	51	72	0	10	17	1.11
9628828--9628897	33	2.1	34	86	2	97	45	0	8	45	1.34
9628927--9628964	16	2.4	16	83	12	51	26	0	0	73	0.83
9628929--9628964	17	2.2	17	90	5	56	25	0	0	75	0.81
9632056--9632091	2	18.0	2	94	0	63	47	0	0	52	1.00
9634078--9634133	23	2.6	23	81	18	75	44	1	1	51	1.22
9635211--9635276	6	10.7	6	76	12	62	9	13	0	77	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113