genome.fa.s68.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  4  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
895956--896597	230	2.8	230	88	1	957	43	16	12	27	1.83
900583--900621	5	7.2	5	86	11	51	58	2	2	35	1.25
900583--900626	23	1.9	23	81	9	54	61	2	2	34	1.21
918644--918683	21	1.9	21	89	0	62	12	5	30	52	1.60
923959--924033	31	2.5	31	86	2	98	33	2	21	42	1.67
923967--924047	30	2.7	30	84	3	92	37	2	19	40	1.65
923978--924060	30	2.8	29	77	17	80	38	3	19	38	1.69
928738--928777	14	2.9	14	84	0	53	47	0	2	50	1.14
928699--928788	47	2.0	45	82	8	110	45	1	3	50	1.25
929399--929437	14	2.8	13	81	11	51	51	0	0	48	1.00
931497--931567	17	3.8	17	75	15	61	57	2	1	38	1.22
934925--934955	2	15.5	2	100	0	62	51	0	0	48	1.00
939037--939095	29	2.1	28	80	3	64	42	3	1	52	1.28
941678--941714	2	18.5	2	100	0	74	51	0	0	48	1.00
944850--944905	29	1.9	29	96	0	103	60	3	0	35	1.14
948217--948243	4	6.8	4	100	0	54	51	0	0	48	1.00
966397--966435	3	12.7	3	89	5	60	66	0	0	33	0.92
969452--969482	16	1.9	16	93	0	53	74	6	12	6	1.21
975180--975405	110	2.0	111	94	3	411	46	19	13	20	1.84
986583--986620	15	2.5	15	84	12	51	0	26	2	71	1.00
988552--988585	3	11.3	3	100	0	68	67	0	0	32	0.91
990207--990249	19	2.3	19	87	0	59	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
990360--990392	8	4.1	8	96	0	57	42	0	0	57	0.98
991437--991492	26	2.1	28	83	6	71	37	3	1	57	1.27
998346--998381	2	18.0	2	100	0	72	50	0	50	0	1.00
1003158--1003227	26	2.8	24	82	8	79	65	1	1	31	1.10
1003181--1003225	22	2.0	23	91	8	74	64	0	2	33	1.06
1005366--1005613	109	2.3	107	78	4	248	29	8	27	34	1.87
1005425--1005589	73	2.3	73	81	3	181	29	7	29	33	1.84
1005382--1005613	36	6.4	36	76	4	191	28	9	28	34	1.87
1012577--1012669	45	2.1	44	87	2	132	46	10	21	21	1.81
1015491--1015554	22	2.8	23	80	4	94	28	9	7	54	1.60
1023476--1023520	23	2.0	23	81	0	54	46	4	6	42	1.50
1023660--1023702	22	2.0	22	85	0	59	65	9	6	18	1.44
1023672--1023702	11	2.8	11	90	0	53	64	9	6	19	1.45
1030521--1030585	33	2.0	33	90	0	103	36	7	16	38	1.78
1030597--1030680	42	2.0	43	92	2	143	35	1	11	51	1.47
1030875--1030912	20	1.9	20	94	0	67	34	15	10	39	1.82
1033254--1033319	33	2.0	33	93	0	114	50	15	18	16	1.79
1033736--1033775	2	20.0	2	100	0	80	0	50	0	50	1.00
1034581--1034614	5	7.0	5	86	6	52	76	0	23	0	0.79
1035165--1035204	19	2.1	19	90	0	62	17	27	27	27	1.98
1038755--1038789	2	17.5	2	93	0	61	51	2	0	45	1.16
1040089--1040714	237	2.7	237	81	7	686	33	9	11	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040516--1040920	209	1.9	208	81	4	485	35	8	9	47	1.66
1044021--1044646	204	3.1	201	80	4	611	34	10	11	43	1.75
1045095--1045134	19	2.1	19	86	9	55	12	15	0	72	1.12
1050255--1050284	8	3.9	8	95	4	53	0	6	0	93	0.35
1050255--1050284	15	1.9	15	93	6	51	0	6	0	93	0.35
1051280--1051311	9	3.6	9	95	0	55	68	0	21	9	1.17
1061650--1061694	14	3.1	16	78	18	53	48	0	0	51	1.00
1061688--1061754	29	2.4	29	82	9	77	55	1	2	40	1.24
1061777--1061837	16	3.4	17	82	13	70	40	0	1	57	1.08
1061787--1061847	22	2.8	22	82	9	63	39	0	1	59	1.08
1061800--1061866	27	2.5	26	79	13	66	41	0	1	56	1.08
1087300--1087379	40	2.0	40	100	0	160	15	17	27	40	1.89
1089280--1089308	9	3.2	9	100	0	58	55	0	44	0	0.99
1092971--1093177	71	2.9	71	79	11	240	46	5	5	42	1.49
1092971--1093177	72	2.9	70	82	7	238	46	5	5	42	1.49
1094779--1094825	21	2.2	21	88	0	67	46	0	0	53	1.00
1096142--1096175	18	1.9	17	88	5	50	50	5	0	44	1.26
1098441--1098503	30	2.2	27	81	10	72	49	1	0	49	1.10
1108182--1108208	13	2.1	13	100	0	54	48	14	29	7	1.71
1111193--1111229	14	2.9	12	85	14	56	51	0	0	48	1.00
1111379--1111426	13	3.6	13	77	5	51	54	0	0	45	0.99
1119229--1119254	3	8.7	3	100	0	52	69	0	30	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1119956--1120020	28	2.3	29	84	10	89	40	4	1	53	1.31
1130141--1130195	16	3.6	16	80	11	62	47	0	0	52	1.00
1130340--1130380	14	3.0	14	82	13	50	48	0	2	48	1.14
1130340--1130407	13	5.4	13	80	18	56	54	0	1	44	1.09
1130385--1130443	23	2.5	24	81	15	70	57	0	3	38	1.15
1130511--1130558	13	3.8	12	78	10	51	45	6	0	47	1.27
1130511--1130548	13	3.0	13	82	17	53	42	5	0	52	1.24
1130605--1130634	12	2.5	12	88	0	51	23	0	0	76	0.78
1132902--1132951	21	2.2	22	79	13	57	70	6	16	8	1.32
1133133--1133299	61	2.8	60	76	11	153	31	17	8	41	1.80
1133156--1133271	61	1.9	61	84	7	155	30	18	7	43	1.79
1139613--1139647	16	2.2	16	90	10	54	60	5	0	34	1.21
1151488--1151528	2	20.5	2	94	0	73	48	2	0	48	1.14
1161488--1161547	6	10.0	6	94	0	66	21	5	56	16	1.59
1161488--1161547	12	5.0	12	89	0	75	21	5	56	16	1.59
1171599--1171657	14	4.5	13	79	12	59	42	0	0	57	0.98
1171597--1171647	20	2.6	18	82	17	66	39	0	0	60	0.97
1178162--1178236	11	5.9	13	73	23	54	48	0	0	52	1.00
1178149--1178231	24	3.5	23	71	14	71	48	1	0	50	1.08
1178141--1178233	47	2.0	47	83	8	118	46	1	0	52	1.07
1178522--1178553	13	2.4	14	94	5	57	62	0	3	34	1.11
1179241--1179275	2	17.5	2	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1184506--1184550	21	2.1	21	84	8	56	44	2	4	48	1.35
1203827--1203893	3	22.3	3	77	17	68	32	31	4	31	1.78
1203826--1203893	18	3.8	18	79	11	77	32	30	4	32	1.78
1204944--1204986	16	2.7	16	78	10	52	30	0	2	67	1.03
1219646--1219813	64	2.6	64	89	0	264	56	6	7	29	1.51
1225223--1225265	16	2.7	16	85	0	50	46	4	4	44	1.45
1225286--1225625	18	18.6	18	67	22	117	56	2	1	39	1.23
1225298--1225410	48	2.4	47	79	13	126	55	3	1	38	1.27
1225323--1225417	35	2.9	34	79	14	92	56	3	2	37	1.27
1225373--1225606	96	2.2	107	76	17	197	55	2	1	40	1.22
1225323--1225536	83	2.6	76	78	16	184	56	2	1	40	1.21
1225285--1225604	15	22.2	14	68	21	141	56	2	1	39	1.22
1225506--1225626	41	3.0	41	84	4	138	55	1	3	39	1.26
1225652--1225699	19	2.5	19	86	6	62	45	2	2	50	1.25
1225655--1225745	19	5.2	16	71	19	51	46	1	1	51	1.15
1225712--1225752	16	2.7	15	85	7	55	48	2	0	48	1.14
1225722--1225771	26	2.0	25	92	4	82	50	4	0	46	1.20
1226818--1226982	83	2.0	84	93	1	287	24	11	12	50	1.73
1227578--1227602	2	12.5	2	100	0	50	0	48	0	52	1.00
1231423--1231460	2	19.0	2	94	0	67	47	0	52	0	1.00
1232471--1232515	15	3.0	15	86	0	54	17	28	13	40	1.88
1232721--1232748	3	9.3	3	100	0	56	0	35	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1233269--1233325	28	2.2	28	82	14	70	56	8	3	31	1.47
1233421--1233480	32	1.9	32	86	10	88	51	3	0	45	1.17
1238484--1238526	3	14.0	3	85	4	59	62	2	2	32	1.20
1238816--1238859	3	14.7	3	90	0	70	0	29	4	65	1.12
1240640--1241329	347	2.0	338	87	3	988	30	15	15	38	1.89
1243052--1243091	2	20.0	2	100	0	80	0	0	50	50	1.00
1243091--1243117	2	13.5	2	100	0	54	48	0	51	0	1.00
1244845--1244870	9	2.9	9	100	0	52	69	0	0	30	0.89
1245118--1245159	22	2.0	20	90	9	66	40	0	2	57	1.12
1245207--1245244	19	2.1	18	90	5	58	42	0	0	57	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113