genome.fa.s68.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  9  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2581350--2581483	51	2.6	51	81	1	133	40	10	14	35	1.80
2582001--2582027	14	1.9	14	100	0	54	18	0	7	74	1.05
2593662--2593691	5	6.0	5	100	0	60	20	0	0	80	0.72
2594504--2594643	52	2.7	51	78	7	133	50	6	12	30	1.65
2594809--2594862	22	2.4	22	93	3	90	24	3	38	33	1.73
2597630--2597673	12	3.4	13	87	9	63	59	0	0	40	0.98
2597630--2597677	13	3.6	13	83	5	60	56	0	0	43	0.99
2597620--2597679	12	4.8	12	78	11	59	56	0	1	41	1.09
2599228--2599261	17	2.0	17	100	0	68	23	0	17	58	1.38
2610856--2610921	33	2.0	33	96	0	123	34	12	10	42	1.77
2611578--2611939	99	3.7	99	73	5	223	33	8	9	48	1.66
2616091--2616128	19	2.0	19	85	10	51	50	5	5	39	1.48
2630325--2630350	12	2.2	12	100	0	52	34	23	23	19	1.96
2636339--2636391	26	2.1	25	82	3	61	56	3	1	37	1.28
2636562--2636616	22	2.5	22	81	0	65	60	12	7	20	1.56
2638452--2638481	16	1.9	15	93	6	51	93	3	3	0	0.42
2648054--2648255	105	1.9	105	91	2	334	23	18	29	29	1.98
2650022--2650058	18	2.0	19	89	5	58	45	0	0	54	1.00
2655827--2655866	16	2.7	14	88	7	53	55	0	0	45	0.99
2655832--2655868	8	4.6	8	86	0	56	56	0	0	43	0.99
2655829--2655876	14	3.3	14	80	11	51	60	0	0	39	0.97
2661732--2661790	30	2.0	30	93	6	102	10	6	25	57	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2666305--2666361	23	2.4	24	85	5	71	59	5	7	28	1.45
2673777--2673909	33	4.1	33	76	7	130	55	12	30	0	1.43
2673773--2673903	15	8.3	15	68	9	73	56	12	29	0	1.42
2673825--2673880	18	3.3	18	73	14	64	53	10	33	1	1.46
2673788--2673906	15	7.5	15	70	10	76	57	12	28	0	1.41
2676523--2676562	2	20.0	2	94	0	71	50	2	0	47	1.14
2677164--2677197	2	17.5	2	93	6	61	52	0	0	47	1.00
2679861--2679899	20	2.0	20	84	0	51	66	12	2	17	1.35
2686398--2686451	27	2.0	27	82	7	65	42	5	3	48	1.44
2686182--2686648	171	2.7	171	85	4	579	38	10	6	44	1.65
2688005--2688144	44	3.2	44	74	9	126	46	17	9	27	1.78
2688027--2688226	88	2.3	88	82	7	246	45	15	12	27	1.81
2688026--2688218	44	4.4	45	77	10	159	47	14	11	26	1.78
2688075--2688220	44	3.3	43	79	7	168	47	13	13	25	1.79
2688497--2688559	33	1.9	33	86	0	90	42	19	11	26	1.84
2689600--2689683	16	5.3	15	74	24	50	14	11	0	73	1.09
2689610--2689683	16	4.6	16	79	15	82	12	12	0	75	1.04
2689624--2689654	8	3.8	8	95	4	53	12	3	0	83	0.75
2689603--2689683	32	2.5	33	86	6	103	13	11	0	75	1.05
2689587--2689683	7	12.1	8	72	19	69	12	13	0	74	1.08
2689622--2689684	25	2.5	26	82	10	78	11	14	0	74	1.07
2693818--2693844	10	2.7	10	100	0	54	11	0	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2693918--2694369	170	2.7	170	82	4	529	38	11	7	41	1.71
2695668--2695718	25	2.0	27	84	7	70	56	0	0	43	0.99
2695668--2695718	26	2.0	27	84	7	70	56	0	0	43	0.99
2695794--2695862	35	2.0	35	88	0	102	39	2	1	56	1.23
2695841--2695927	21	4.0	21	72	14	70	42	0	1	56	1.07
2695809--2695957	80	1.9	78	86	5	210	41	0	1	56	1.12
2695851--2695958	16	6.8	16	72	16	80	42	0	0	56	1.05
2695946--2695984	10	3.7	10	83	12	51	43	2	2	51	1.29
2695805--2696018	22	9.5	22	69	19	95	42	0	1	55	1.15
2696581--2696639	25	2.4	24	81	13	66	50	3	0	45	1.18
2696726--2696957	23	10.0	23	68	25	134	43	1	0	54	1.16
2696725--2696994	18	15.7	17	68	22	156	42	1	0	54	1.16
2696757--2696956	45	4.8	42	72	23	104	43	1	1	54	1.16
2696831--2696918	30	2.9	31	74	14	85	44	1	0	54	1.07
2696757--2696972	41	5.4	39	71	21	148	43	1	0	54	1.15
2704604--2704799	101	2.0	101	94	3	353	16	21	21	39	1.92
2707525--2707594	24	3.0	24	74	15	67	41	0	1	57	1.08
2707580--2707636	13	4.5	13	77	4	53	29	7	1	61	1.32
2709205--2709258	20	2.7	21	80	8	67	24	0	11	64	1.25
2709241--2709287	15	3.2	14	90	6	67	27	0	8	63	1.23
2710871--2710912	20	2.0	21	82	13	52	54	0	4	40	1.21
2711388--2711448	32	1.9	32	87	9	90	50	21	0	27	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2727643--2727669	2	13.5	2	100	0	54	48	0	0	51	1.00
2734285--2734329	22	2.0	22	86	0	63	40	2	0	57	1.11
2750250--2750480	119	1.9	120	92	0	392	43	12	15	28	1.83
2763169--2763239	14	4.9	14	70	13	54	64	2	1	30	1.16
2765965--2766003	4	9.8	4	94	0	69	51	20	0	28	1.48
2766645--2766670	13	2.0	13	100	0	52	46	7	0	46	1.31
2766858--2766927	32	2.2	32	80	14	83	52	4	4	38	1.41
2766955--2766992	15	2.4	16	87	12	53	52	0	0	47	1.00
2780838--2780992	78	2.0	78	83	2	195	27	21	20	31	1.98
2785632--2785701	30	2.3	32	80	7	83	55	1	0	42	1.08
2785795--2785823	11	2.7	11	94	5	51	20	62	17	0	1.33
2789115--2789156	21	2.0	22	90	4	68	52	0	0	47	1.00
2789585--2789614	11	2.7	11	94	0	51	36	10	0	53	1.35
2790729--2790763	17	2.1	17	88	0	52	17	0	8	74	1.06
2791246--2791275	12	2.5	12	100	0	60	36	0	13	50	1.42
2791274--2791317	19	2.2	20	84	12	54	31	2	2	63	1.19
2791423--2791528	31	3.4	31	75	8	88	43	6	4	45	1.51
2791577--2791617	17	2.5	17	80	15	50	31	2	0	65	1.05
2791937--2791978	15	2.7	16	74	3	50	66	7	0	26	1.17
2792056--2792136	40	2.0	41	87	2	119	33	12	11	43	1.78
2802570--2802945	186	2.0	186	99	0	743	23	16	26	34	1.95
2802993--2803024	10	3.2	10	95	0	55	15	9	21	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2807175--2807215	18	2.2	19	86	8	57	24	26	7	41	1.81
2820022--2820062	15	2.9	15	85	7	50	85	12	2	0	0.70
2821778--2821802	7	3.6	7	100	0	50	12	44	0	44	1.41
2827283--2827309	14	1.9	14	100	0	54	66	0	33	0	0.92
2828030--2828060	2	15.5	2	100	0	62	51	0	48	0	1.00
2840779--2840818	20	2.0	21	90	5	64	32	0	20	47	1.50
2849184--2849211	2	14.0	2	100	0	56	50	0	0	50	1.00
2854071--2854224	52	3.0	51	77	11	163	46	6	18	29	1.74
2854708--2854790	31	2.7	31	90	1	114	26	20	25	27	1.99
2854855--2854909	25	2.2	25	87	6	76	36	3	38	21	1.71
2855201--2855347	52	2.8	51	85	4	195	40	7	23	27	1.81
2860946--2860996	21	2.4	21	93	0	84	15	13	15	54	1.71
2863785--2863816	2	16.0	2	93	0	55	46	0	3	50	1.17
2864395--2864424	10	3.1	10	95	4	53	63	0	0	36	0.95
2864391--2864437	19	2.5	19	77	19	53	61	4	0	34	1.15
2875586--2875615	4	7.5	4	100	0	60	50	26	0	23	1.50
2918788--2918814	2	13.5	2	100	0	54	0	48	0	51	1.00
2924622--2924658	17	2.1	18	90	5	58	51	0	2	45	1.15
2925240--2925301	20	3.0	20	77	13	72	35	11	17	35	1.86
2934725--2934782	29	2.0	30	86	3	82	43	12	1	43	1.52
2941144--2941183	2	20.0	2	100	0	80	50	0	0	50	1.00
2966620--2966688	30	2.3	29	80	9	77	42	0	1	56	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2977206--2977255	25	2.0	25	84	0	64	34	0	4	62	1.14
2978132--2978156	4	6.2	4	100	0	50	0	24	0	76	0.80
2978617--2978660	22	1.9	24	86	9	65	52	0	2	45	1.13
2979562--2979605	14	3.2	14	81	12	56	43	6	9	40	1.63
2981875--2981942	34	2.0	34	100	0	136	26	17	20	35	1.95
2988250--2988279	12	2.4	13	94	5	53	0	13	0	86	0.57
2992028--2992096	29	2.3	29	85	5	93	52	1	1	44	1.19
2992881--2992941	31	2.0	31	83	6	79	52	0	3	44	1.17
2992977--2993013	18	2.1	18	89	0	56	35	0	2	62	1.10
2993359--2993417	27	2.2	26	87	3	82	67	1	10	20	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113