genome.fa.s68.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167893.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_16, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22157061

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   

This is table  52  of  113  ( 13473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13416805--13416836	15	2.0	17	88	11	50	25	25	0	50	1.50
13425980--13426015	18	1.9	18	88	5	54	55	2	11	30	1.49
13425996--13426040	20	2.2	21	80	8	56	42	6	6	44	1.57
13426004--13426043	20	2.0	20	100	0	80	35	5	10	50	1.58
13426186--13426782	127	4.9	124	75	12	553	32	8	12	46	1.71
13426997--13427082	42	2.0	42	97	0	163	33	19	13	32	1.91
13431253--13431317	31	2.1	31	86	11	89	66	6	16	10	1.42
13431492--13431538	23	2.0	23	83	0	58	25	17	19	38	1.92
13431556--13431628	32	2.3	32	88	2	103	31	12	19	36	1.88
13432312--13432495	101	1.8	102	84	7	257	35	11	14	37	1.83
13438007--13438033	2	13.5	2	100	0	54	51	0	0	48	1.00
13440577--13440617	6	7.2	6	91	5	59	46	0	0	53	1.00
13442757--13442781	12	2.1	12	100	0	50	48	0	0	52	1.00
13443144--13443172	2	14.5	2	100	0	58	51	0	0	48	1.00
13448258--13448309	24	2.2	24	100	0	104	36	25	15	23	1.93
13449162--13449207	23	2.0	22	83	4	56	45	0	2	52	1.13
13452552--13452596	12	3.5	13	81	9	56	24	2	0	73	0.95
13452560--13452599	20	2.1	19	86	13	55	22	2	0	75	0.93
13452552--13452611	25	2.4	25	82	2	66	30	1	0	68	0.99
13452667--13452711	22	2.0	23	86	4	65	55	0	2	42	1.12
13452672--13452718	22	2.1	22	84	0	58	59	0	2	38	1.09
13453126--13453253	61	2.1	61	97	0	238	28	20	25	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13454678--13454703	3	8.7	3	100	0	52	30	0	0	69	0.89
13454761--13454802	18	2.2	20	87	8	61	23	7	4	64	1.38
13455757--13455804	19	2.6	19	80	6	55	14	6	2	77	1.06
13455831--13456186	60	6.0	60	89	6	487	45	7	12	35	1.68
13456144--13456278	43	2.8	52	72	22	137	42	8	13	35	1.75
13460137--13460202	9	7.6	9	77	13	50	81	0	9	9	0.87
13460158--13460202	10	4.6	10	83	2	56	88	0	6	4	0.61
13460158--13460202	20	2.3	20	88	3	65	88	0	6	4	0.61
13461450--13461830	41	9.3	41	91	3	615	22	16	23	37	1.94
13461450--13461830	165	2.3	164	93	2	640	22	16	23	37	1.94
13461837--13461873	16	2.4	16	95	4	67	86	10	0	2	0.67
13461968--13462008	20	2.0	21	90	4	66	26	29	24	19	1.98
13462713--13462757	22	2.0	22	82	0	54	22	20	20	37	1.94
13462743--13462792	20	2.5	20	80	3	57	34	10	14	42	1.78
13463021--13463051	5	6.2	5	92	0	53	22	41	35	0	1.54
13463155--13463202	19	2.6	19	80	6	55	14	6	2	77	1.06
13463229--13463549	60	5.4	56	78	13	299	43	6	13	36	1.70
13463229--13463549	118	2.7	117	85	8	397	43	6	13	36	1.70
13463532--13463564	15	2.2	15	94	0	57	45	9	0	45	1.35
13463485--13463621	74	1.9	72	88	8	206	44	8	10	36	1.69
13464223--13464257	3	11.7	3	93	0	61	68	28	0	2	1.04
13464256--13464284	3	9.7	3	100	0	58	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13465905--13465939	3	11.7	3	100	0	70	34	0	0	65	0.93
13466403--13466444	11	3.8	11	90	0	66	19	0	30	50	1.48
13466402--13466444	22	2.0	22	95	0	77	20	0	30	48	1.50
13466501--13466625	52	2.4	52	84	0	151	36	8	26	28	1.86
13467507--13467548	11	3.8	11	83	0	57	26	0	21	52	1.47
13467605--13467729	52	2.4	52	89	0	178	36	7	27	29	1.83
13476489--13476545	28	2.0	28	82	0	69	35	7	10	47	1.65
13477475--13477515	17	2.6	16	88	7	57	51	2	2	43	1.28
13477528--13477563	17	2.1	17	89	0	54	50	0	2	47	1.15
13478767--13478798	4	8.2	4	93	6	57	78	0	21	0	0.76
13478952--13478980	6	4.8	6	100	0	58	17	0	48	34	1.47
13479919--13479954	18	1.9	19	88	5	56	44	0	0	55	0.99
13481283--13481325	18	2.4	18	88	0	59	55	2	4	37	1.33
13481961--13482173	4	54.2	4	71	15	53	29	1	2	66	1.17
13482071--13482157	3	27.7	3	77	19	65	32	2	0	65	1.05
13482066--13482173	11	9.8	12	70	16	74	30	1	0	67	1.01
13482077--13482144	20	3.3	22	73	25	67	32	1	0	66	1.01
13481967--13482173	76	2.8	73	78	13	185	29	1	2	66	1.15
13482047--13482170	34	3.5	34	80	14	112	30	1	0	66	1.06
13482047--13482248	39	5.4	38	75	17	133	29	3	2	64	1.22
13482718--13482761	19	2.2	20	84	4	54	38	31	15	13	1.87
13483090--13483125	13	2.9	12	88	8	54	19	0	2	77	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13483091--13483122	17	1.9	16	93	6	55	15	0	3	81	0.82
13483161--13483217	23	2.4	23	77	11	62	14	7	1	77	1.06
13483148--13483217	23	3.0	22	76	12	61	14	8	1	75	1.10
13483232--13483641	117	3.5	114	82	10	447	45	7	12	34	1.70
13483239--13483641	59	6.9	58	80	9	435	44	7	12	35	1.70
13483248--13483637	177	2.2	175	87	4	563	45	6	12	34	1.69
13490956--13491018	21	2.9	21	76	17	56	66	0	4	28	1.12
13490957--13491065	20	5.7	19	71	19	68	69	0	3	25	1.10
13491013--13491065	4	13.0	4	76	11	54	73	1	1	22	1.03
13492450--13492597	67	2.2	67	81	3	165	50	12	18	18	1.77
13494551--13494593	19	2.2	20	91	4	70	4	11	2	81	0.93
13494551--13494593	20	2.2	19	87	4	59	4	11	2	81	0.93
13494557--13494598	19	2.2	19	87	8	59	4	16	0	78	0.91
13498481--13498535	3	18.3	3	100	0	110	67	0	0	32	0.91
13498483--13498606	6	21.0	6	84	11	78	74	1	3	20	1.05
13498546--13498600	28	2.0	28	89	7	85	78	3	3	14	1.03
13498566--13498614	18	2.5	20	80	12	66	79	2	2	16	0.92
13498565--13498621	18	3.2	19	75	20	61	78	1	3	15	0.96
13500965--13500996	3	10.7	3	100	0	64	34	0	0	65	0.93
13503956--13504030	22	3.4	21	80	9	62	36	10	16	37	1.83
13503998--13504408	104	4.0	104	80	0	457	34	15	14	35	1.89
13504421--13504484	32	2.0	32	84	6	85	17	14	28	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13504560--13504610	23	2.2	23	79	6	59	39	11	11	37	1.79
13504643--13504689	23	2.0	23	84	8	60	31	14	19	34	1.92
13504579--13504764	77	2.4	78	81	7	211	30	15	22	32	1.94
13504638--13504782	77	1.9	77	80	11	172	29	15	21	33	1.95
13504727--13504780	23	2.3	23	90	0	81	35	18	16	29	1.93
13505206--13505400	95	2.1	92	85	6	259	28	14	13	43	1.83
13505355--13505527	90	1.9	91	84	1	231	24	11	13	50	1.75
13508210--13508420	103	2.0	103	97	0	395	33	18	8	38	1.82
13511840--13511874	17	1.9	19	88	11	56	28	22	0	48	1.51
13517095--13517173	41	1.9	41	94	5	142	30	17	17	34	1.94
13517136--13517368	84	2.8	84	80	3	247	35	16	14	33	1.89
13520777--13520884	52	2.1	52	85	1	146	39	8	10	41	1.69
13527749--13528680	332	2.8	332	85	1	1165	38	12	12	35	1.82
13533595--13533646	22	2.5	20	75	6	50	61	1	3	32	1.25
13533719--13533777	30	1.9	31	83	10	77	47	5	0	47	1.24
13533813--13533850	20	1.9	20	84	10	51	42	0	0	57	0.98
13535105--13535154	12	4.1	12	75	19	50	46	0	0	54	1.00
13535223--13535263	16	2.4	17	88	8	57	73	0	2	24	0.96
13542835--13542879	22	2.0	22	86	4	63	40	2	0	57	1.11
13542873--13542903	11	2.8	11	95	0	53	83	0	3	12	0.75
13542658--13543186	294	1.8	293	93	1	925	51	0	5	41	1.32
13545946--13545982	18	2.1	18	100	0	74	27	16	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13547383--13547426	23	1.9	23	86	9	63	15	22	4	56	1.57
13554004--13554043	17	2.4	17	87	4	55	55	7	10	27	1.60
13564337--13564401	30	2.2	30	91	0	103	26	13	7	52	1.67
13567021--13567055	18	1.9	18	88	0	52	25	5	11	57	1.56
13568955--13569000	22	2.1	22	91	0	74	56	10	8	23	1.61
13569303--13569381	31	2.5	31	85	0	104	37	11	10	40	1.75
13569396--13569440	18	2.4	18	85	3	63	37	0	4	57	1.19
13569469--13569555	32	2.8	32	84	8	99	40	14	1	43	1.53
13570319--13570408	14	6.2	14	73	17	69	50	0	3	46	1.18
13570328--13570417	46	2.0	46	84	8	121	53	0	3	43	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113